BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01290.1
Length=2364
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939541 jgi|Araly1|939541|scaffold_600085.1 3155 0.0
Ahg478222 jgi|Araly1|478222|fgenesh2_kg.3__923__AT3G09100.2 1378 0.0
Ahg942438 jgi|Araly1|942438|scaffold_602982.1 769 0.0
> Ahg939541 jgi|Araly1|939541|scaffold_600085.1
Length=2046
Score = 3155 bits (1708), Expect = 0.0
Identities = 1923/2022 (95%), Gaps = 33/2022 (2%)
Strand=Plus/Plus
Query 209 CTGCGATGGACCTAAATGCTTCACCACAACCCGAAGAAGACGATGAACCCTTTAAGAGAC 268
|||| |||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||
Sbjct 21 CTGCAATGGACCTAAATGCTTCACCCCAACCCGAAGAAGACGAGGAATCCTTTAAGAGAC 80
Query 269 GTCATGAAGATCGAATGGAATCTGCTGTTGAGATCGCTAGACGGGAGCGTGAAGAACGAA 328
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 GTCATGAAGATCGAGTTGAATCTGCTGTTGAGATCGCTAGACGGGAGCGTGAAGAACGAA 140
Query 329 AGAAACGAATGAGATTTGATAGGCCAA-CACG-AGTCTCTCAGCCGGCTTTTCGTGATCA 386
||||||||||||||| ||| ||||||| || | || ||||||||||| ||||||||| ||
Sbjct 141 AGAAACGAATGAGATATGACAGGCCAACCA-GAAG-CTCTCAGCCGGTTTTTCGTGACCA 198
Query 387 G---TAT------AGAGATACTAGAGTTTATGATCAAAGCAAGCTTCCTCAGGGTTGGCT 437
| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 GTCTTATCAGAAGAGAGATACTAGAGTTTATGATCAAAGCAAGCTTCCTCAGGGTTGGCT 258
Query 438 AGATTGTCCTGGTTTTGGTCTGGAGATAGGATGTATTATTCCTTCTAAGGTTCCACTTAG 497
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 259 AGATTGTCCTGGTTTTGGTCTGGAGATAGGTTGTATTATTCCTTCTAAGGTTCCTCTTAG 318
Query 498 TGAATCTTACAACGAACATGTTCCTCCTGGTAAAAGATACTCTTTCAAACAGGTGGTTCG 557
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 319 TGAATCTTACAACGAACATGTTCCTCCTGGTAAAAGATACTCTTTTAAACAGGTGGTCCG 378
Query 558 TAACCAGAGAATTAATGGAAGAAAACTTGGTCTAGTCATTGATCTTACTAATACAACTCG 617
||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 379 TAACCAGAGAATTAATGGAAGAAAACTTGGTCTTGTGATTGATCTAACTAATACAACTCG 438
Query 618 TTACTACCCTACA-TTAGACTTAAAGAAGGATGGCATCAAGCATGTTAAGATTGCATGCA 676
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 TTACTACCCTACACTT-GACTTAAAGAAGGATGGCATCAAGCATGTTAAGATTGCATGCA 497
Query 677 GGGGTCGTGATGCTGTGCCTGATAATGTCTCTGTAAACACCTTTGTCAACGAGGTTCTGC 736
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 498 GGGGTCGTGATGCCGTGCCTGATAATGTGTCTGTAAACACCTTTGTCAACGAGGTTCTGC 557
Query 737 AGTTCGTCCTTAATCAAAAACACGCAAAGAAGTATGTCCTCGTCCACTGTACACATGGGC 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 AGTTCGTCCTTAATCAAAAACACGCAAAGAAGTATGTCCTCGTCCACTGTACACATGGGC 617
Query 797 ATAATCGGACAGGGTTCATGATAGTTCATTATCTCATGCGCTCTATGCCAACGATGAACG 856
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 618 ATAATCGGACAGGTTTCATGATAGTTCATTATCTTATGCGCTCTATGCCAACGATGAACG 677
Query 857 TTACACAGGCATTGAAGTTGTTTTCTGATGCCCGCCCACCTGGGATTTATAAACCAGATT 916
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 678 TTACACAGGCATTGAAGTTGTTTTCTGATGCCCGCCCACCTGGGATTTATAAAGCGGATT 737
Query 917 ATATTGATGCTTTATACACTTTTTATCACGAAATAAAGCCTGAAAGTGTTACTTGCCCAC 976
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 738 ATATTGATGCTTTATACACTTTTTATCACGAAATAAAGCCTGAGAGTGTTACTTGCCCAC 797
Query 977 CAACTCCTGAATGGAAGAGGTCTGCCGAGCTTGATCTTAATGGTGAAGCTGTTC-A-A-g 1033
|||||||| |||||||||||||| |||||||||||||||||||||||||||||| | | |
Sbjct 798 CAACTCCTCAATGGAAGAGGTCTACCGAGCTTGATCTTAATGGTGAAGCTGTTCAAGATG 857
Query 1034 atgatgatgatgatgatTCTCCGCCTGACCCTGTTCAAGAAATCAATCAGGAGAATGTGA 1093
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 858 ATGATGATGATGATGATTCTCCGCCTGACCCTGTTCAAGAAATTAATCAGGAGACTGTGA 917
Query 1094 AGATGTCAAATGATGACACTTTGGGTGATGAAATACCCCATTATCAGGAGGAAGCTTACC 1153
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 918 AGATGTCAAATGATGACATTTTGGGTGATGAAATACCCCATTATCAGGAGGAAGCTTACC 977
Query 1154 GGCAATTCTGTTATAAAATGC-TTAT--------------GATGAATGTTGGGGGAAGAG 1198
|||||||||||||||| |||| |||| ||||||| |||||||| |||
Sbjct 978 GGCAATTCTGTTATAAGATGCTTTATCCAGAAAACAAGAAGATGAATATTGGGGGAGGAG 1037
Query 1199 GATTTATGCAATTCCCAGGTTCGCACCCTGTATCATTAGACAGGGAGAGTTTGCAACTTT 1258
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 GATGTAAGCCATTCCCAGGTTCGCACCCTGTATCATTAGACAGGGAGAGTTTGCAACTTT 1097
Query 1259 TGAGGCAGCGATACTATTATGCGACATGGAAGGCAGATGGAACACGTTATATGATGCTCT 1318
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 TGAGACAGCGGTACTATTATGCGACATGGAAGGCAGATGGAACACGTTATATGATGCTCT 1157
Query 1319 TAACTATAGATGGGTGCTATTTGATAGATAGGAGCTTTAAGTTTCGGAGGGTACAGATGC 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 TAACTATAGATGGGTGCTATTTGATAGATAGGAGCTTTAAGTTTCGGAGGGTACAGATGC 1217
Query 1379 GTTTTCCCTGTAAGCACTCACGTGAGGGAATTTCTGATAAAGTGCATCACTACACTTTGC 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 GTTTTCCCTGTAAGCACTCACGTGAGGGAATTTCTGATAAAGTGCATCACTACACTTTGC 1277
Query 1439 TTGATGGAGAGATGGTCATAGATACCCCGACAGGTGAGCAAGGGGAGGCAAGGAGGAGGT 1498
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1278 TTGATGGAGAGATGGTCATAGATACCCCGACAGGTGAACAAGGGGAGGCGAGGAGGAGGT 1337
Query 1499 ATCTCGTATATGATATGGTAGCAATCAATGGTGAATCAGTTGTAGAGCGGACTTTCTGTG 1558
| |||||||||||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 1338 ACCTCGTATATGATATGGTAGCAATCAACGGCGAATCAGTCGTAGAGCGGACTTTCTGTG 1397
Query 1559 AAAGATGGAACATGTTCGTGCGTGAGGTGATCGGACCTCGAGCAGCTGAGAAGCTCAGAA 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 AAAGATGGAACATGTTCGTGCGTGAGGTGATCGGACCTCGAGCAGCTGAGAAGCTCAGAA 1457
Query 1619 GTCATTGCTACAGATATGACCTTGAGCCTTTTGCGGTACGGATGAAGGGTTTCTGGTTAC 1678
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1458 GTCATTGCTATAGATATGACCTTGAGCCTTTTGCGGTACGGATGAAGGGTTTTTGGTTAC 1517
Query 1679 TTTCTACTGTTGAGAAGCTGTTGAAGAATACCATTCCATCGCTTTCGCATGAAGCAGATG 1738
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 TTTCGACTGTTGAGAAGCTTTTGAAGAATACCATTCCATCGCTTTCGCATGAAGCAGATG 1577
Query 1739 GCTTAATATTTCAGGGTTGGGATGATCCGTATGTTCCACGAACCCATAAAGGTCTACTGA 1798
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1578 GCTTAATATTTCAGGGTTGGGATGATCCTTATGTTCCACGAACCCATAAAGGTCTGTTGA 1637
Query 1799 AGTGGAAGTATGCAGAAATGAACTCAGTAGACTTTCTGTATGAGATGGGTGAGGAAGAGG 1858
||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| ||||
Sbjct 1638 AGTGGAAGTATGCAGAAATGAACTCGGTAGACTTTCTGTTTGAGACGGGTGAGGAGGAGG 1697
Query 1859 GGCGTGGTTTCCTCTTCTTGCATGAAAGAGGGAAGAAAAAGCTTATGGAAGGATATTCAG 1918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698 GGCGTGGTTTCCTCTTCTTGCATGAAAGAGGGAAGAAAAAGCTTATGGAAGGATATTCAG 1757
Query 1919 TTGAGTTTAGAGATGATTCGGACCCGTCAAGTTACAATGGGAAGATTGTAGAATGTGCTT 1978
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1758 TTGAGTTTAGAGATGATTCGGACCCGTCAAGTTACAATGGGAAGATTGTAGAGTGTGCAT 1817
Query 1979 GGGATAAGGATAAGAAAGTTTGGTTTAGCATGAGGATCAGAGTTGACAAAACTACACCAA 2038
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1818 GGGATAAGGATAAGAAAGTTTGGTTTAGCATGCGGATCAGAGTTGACAAAACTACACCAA 1877
Query 2039 ATGATATCAACACTGCTCGTAAGGTGATAAAGAGCATAAATGATAACATCACTGAGGAGG 2098
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1878 ATGATATCAACACCGCTCGTAAGGTGATAAAGAGCATAAATGATAACATCACTGAGGAGG 1937
Query 2099 TTTTGCTTCAGGAAATAAGAGAGATCATTCGTCTCCCAATGTACGCTGACCGCATTCGAA 2158
| ||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1938 TGCTGCTTCAGGAAATAAAAGAGATCATACGTCTCCCGATGTACGCTGACCGCATTCGAA 1997
Query 2159 ATGATAGTCAAGCTGCCCGCCGCCGGTAGAGATTACATTTTT 2200
|||||||||||||||| |||||| |||||||||||||||||
Sbjct 1998 ATGATAGTCAAGCTGCACGCCGCAAGTAGAGATTACATTTTT 2039
> Ahg478222 jgi|Araly1|478222|fgenesh2_kg.3__923__AT3G09100.2
Length=2615
Score = 1378 bits (746), Expect = 0.0
Identities = 1667/2090 (80%), Gaps = 150/2090 (7%)
Strand=Plus/Plus
Query 183 CTGTTGC-TTTGCCATTGAATTATTTGCTGCGATGGACCTAAATGCTTCACCACAACCCG 241
||||| | |||||| ||||| | | ||| |||||||| ||||||||||||| |||||||
Sbjct 166 CTGTT-CATTTGCCCTTGAA-TGGTCGCTACGATGGACTTAAATGCTTCACCCCAACCCG 223
Query 242 AAGAAGACGATGAACCCT-T-T-----A---AG-AGA-CGTCA---T---GAAGATCGAA 283
||||||| || ||||||| | | | || ||| | | | || || || |
Sbjct 224 AAGAAGATGACGAACCCTATGTGAGACATTTAGAAGATTATAATTCTCGGGATGACCGGA 283
Query 284 TGGAATCTGCTGTTGAGATCGCTAGACGGG-AGCGTGAAGA-ACGAAAGAAACGAATGAG 341
| || ||||||||||| ||||| ||| ||| | || ||||| | ||||||||||||||||
Sbjct 284 TAGAGTCTGCTGTTGAAATCGCAAGATGGGTA-CGAGAAGAGA-GAAAGAAACGAATGAG 341
Query 342 ATTTGATAGGCCAACACGAGT--CTCTCAGCCGGCTTTT-CGTGATC---AGTAT-AG-A 393
|| ||| | |||||||| | | ||| ||||| | |||| ||||||| | ||| || |
Sbjct 342 ATATGACAAGCCAACAC-A-TAACTCGCAGCCAG-TTTTCCGTGATCAATATTATCAGAA 398
Query 394 --G--ATACTAGAGTTTATGATCA-A-AGCAAGCTTCCTCAGGGTTGGCTAGATTGTCCT 447
| |||||| || ||||||| | | | |||| | ||||| ||||||||||| || |||
Sbjct 399 TCGAAATACTAAAGCTTATGAT-AGATA-CAAGATCCCTCAAGGTTGGCTAGACTGCCCT 456
Query 448 GGTTTTGGTC-TGGAGATAGGATGT-ATTATTCCTTCTAAGGTTCCACTTAGTGAATCTT 505
|| ||| | | |||||||||| | || ||||||| || ||||| || | ||||||||
Sbjct 457 CCTTCTGGGCAT-GAGATAGGAT-TCCTTGTTCCTTCCAAAGTTCCCCTGAATGAATCTT 514
Query 506 ACAACGAA-CATGTTCCTCCTGGTAA-AAGATACTCTTTCAAACAGGTGGTTCGTAACCA 563
|||| || ||||| |||||||| || ||||||||||| ||||||||| | | ||||||
Sbjct 515 ACAA-TAATCATGTACCTCCTGG-AAGTAGATACTCTTTTAAACAGGTGATCCATAACCA 572
Query 564 GAGAATTA-ATGGAAGAAAACTTGGTCTAGTCATTGATCTT-ACTAATACAACTCGTTAC 621
||| | || ||| ||||| |||||||| || || ||| || || || ||||||||||||
Sbjct 573 GAGGA-TAGCTGGGAGAAAGCTTGGTCTGGTGATCGAT-TTGACAAACACAACTCGTTAC 630
Query 622 TACCCTAC-ATTAGACTTAAAGAAGGATGGCATCAAGCATGTTAAGATTGCATGCAGGGG 680
|| |||| | |||||| ||||| || ||||| |||||||| ||||||||||||| |||
Sbjct 631 TATTCTACGA-CAGACTTGAAGAAAGAAGGCATTAAGCATGTGAAGATTGCATGCAAGGG 689
Query 681 TCGTGATGCTGTGCCTGATAATGTCTCTGTAAACACCTTTGTCAACGAGGTT-CTGCAGT 739
||||||| | ||||| |||||||| ||||| || | |||||||| |||||| | ||||
Sbjct 690 TCGTGATTCAGTGCCAGATAATGTGTCTGTCAATGCGTTTGTCAATGAGGTTAAT-CAGT 748
Query 740 TCGTCCTTAATCAAAAACACGC-AAAGAAGTATGTCCTCGTCCACTGTACACATGGGCAT 798
||||||| |||| ||||||| | ||| |||||| | ||||||||||||||||||||||||
Sbjct 749 TCGTCCTAAATCTAAAACACTCGAAA-AAGTATATTCTCGTCCACTGTACACATGGGCAT 807
Query 799 AATCGGACAGGGTTCATGATAGTTCATTATCTCATGCGCTCTATGCCAACGATGAACGTT 858
|||||||||||||| ||||||||||||||||| ||||| ||| |||||| |||| |||
Sbjct 808 AATCGGACAGGGTTTATGATAGTTCATTATCTTATGCGATCTTTGCCAA---TGAATGTT 864
Query 859 ACACAGGCATTGAAGTTGTTTTCTGATGCCCGCCCACCTGGGATTTATAAACCAGATTAT 918
|||||||||||||| | |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 865 ACACAGGCATTGAAAATCTTTTCTGATGCCCGACCACCTGGGATCTATAAACCTGATTAT 924
Query 919 ATTGATGCTTTATACACTTTTTATCACGAAATAAAGCCTGAAAGTGTTACTTGCCCACCA 978
||||||||||||||| | ||||||||||||||||| |||||||| || | ||||||| ||
Sbjct 925 ATTGATGCTTTATACTCGTTTTATCACGAAATAAAACCTGAAAGCGTCATTTGCCCATCA 984
Query 979 ACTCCTGAATGGAAGAGGTCTGCC-GAGCTTGATCTTAA-TGGTGAAGCTGTT-CAAgat 1035
|||||||||||||||||||| | | || |||||| |||| |||||||||| || | ||||
Sbjct 985 ACTCCTGAATGGAAGAGGTC-GACTGAACTTGAT-TTAAATGGTGAAGCT-TTGCCAGAT 1041
Query 1036 gatgatgatgatgatT-C--TCC-GCCTGACCCTGT----T-----CA--AG-AAA-TCA 1078
||||||||||||||| | ||| || || |||||| | || || ||| |||
Sbjct 1042 GATGATGATGATGATGGCGGTCCAGC-TGGCCCTGTGCAATGTTTTCAGGAGGAAAGTCA 1100
Query 1079 ATC-AG-GAGAATGTGAAGATGTCAAATGATGACACTT-TGGGTGATGAAATACCCCATT 1135
|| || | || ||| |||||||||||||||||| || | ||||||||||| |||| |
Sbjct 1101 -TCCAGTG-GA-TGTCAAGATGTCAAATGATGACG-TTCTAGGTGATGAAATTCCCCCTG 1156
Query 1136 ATCAGGAGGAAGCTTACCGGCAATTCTGTTATAAAATGCTTATGA-TGAATGTTGGGGGA 1194
| |||||||||| ||| ||||| |||| |||||| ||||| || | ||||| ||||||||
Sbjct 1157 ACCAGGAGGAAGGTTATCGGCAGTTCTTTTATAAGATGCT-ATCACTGAATATTGGGGGA 1215
Query 1195 AGAGGAT-TT-ATGCAATT-CCCAGGTTCGCACCCTGTATCATTAGACAGGGAGAGTTTG 1251
||||||| || | ||||| ||| ||||| |||||||| || ||| ||||||| | ||||
Sbjct 1216 AGAGGATGTTCA--CAATTTCCC-GGTTCACACCCTGTCTCCTTAAACAGGGAAAATTTG 1272
Query 1252 CAACTTTTGAGGCAGCGATACTATTATGCGACATGGAAGGCAGATGGAACACGTTATATG 1311
||||| ||||||||||| ||||||||||| |||||||| || |||||||| || ||||||
Sbjct 1273 CAACTCTTGAGGCAGCGGTACTATTATGCAACATGGAAAGCTGATGGAACGCGATATATG 1332
Query 1312 ATGCT-CTTAACTATAGATGGGTGCTATTT-GATAGATAGGAGCTTTAAGTTTC-GGAGG 1368
||||| || ||| |||||||| |||||| | | ||||||||||||||| | ||| |||||
Sbjct 1333 ATGCTGCT-AACCATAGATGGATGCTATCTAG-TAGATAGGAGCTTTA-GATTCCGGAGG 1389
Query 1369 GTACAGATGCGTTTTCCCTGTAAG-CACTCA-CGTGAGGGAATTTCTGATAAAGTGCATC 1426
||||||||||| || |||| | || ||| || | ||| || || |||||||||||||| |
Sbjct 1390 GTACAGATGCGGTTCCCCT-TCAGGCACCCAAC-TGAAGGCATATCTGATAAAGTGCACC 1447
Query 1427 ACTACACTTTGCTTGATGGAGAGATGGTCATAGATACCCCGACAGGTGAGCAAGGGGAGG 1486
| ||||| |||||||||||||| ||| | || |||||| | ||| | | ||| | |||
Sbjct 1448 ATTACACATTGCTTGATGGAGAAATGATAATCGATACCTTGCCAGATAAACAAAAGCAGG 1507
Query 1487 CAAGGAGGAGGTATCTCGTATATGATATGGTAGCAATCAATGGTGAATCAGTTGTAGAGC 1546
| | ||||| || || | ||||| |||||||||||||| || ||||||||||||||
Sbjct 1508 -A-G-AGGAGATACCTAATCTATGACATGGTAGCAATCAACGGCCAATCAGTTGTAGAGA 1564
Query 1547 GGACTTTCTGTGAAAGATGGAACATGTTCGTGC-GTGAGGTGATCGGACCTC-G-AG-CA 1602
|| |||||| |||||||||||| ||| ||| | | |||||||| | ||| | | | ||
Sbjct 1565 GGCCTTTCTATGAAAGATGGAAGATGCTCGAGAAG-GAGGTGATAG-ACCCCCGTAATCA 1622
Query 1603 GCTGAGAAG-CTCAGAAGTCAT-TGCTACAGATATGACCTTGAGCCTTTT-GCGGTACGG 1659
||||||| | |||||||||| | |||||||||||| |||||||||||| | ||| |||
Sbjct 1623 --TGAGAAGGC-CAGAAGTCATAT-CTACAGATATGATCTTGAGCCTTTTAG-GGTGCGG 1677
Query 1660 ATGAAGGG-TTTCTGGTTACTTTCTACTGTTGAGAAGCTGTTGAAGAATACCATTCCATC 1718
| ||| || ||| ||||| |||||| | ||||||||| | |||||| | ||| || ||
Sbjct 1678 A-GAAAGGATTTTTGGTTGCTTTCTGCGGTTGAGAAGGTTTTGAAGGGTTTCATACCGTC 1736
Query 1719 GCTTTCGCATGAAGCAGATGGCTTAATATTTCAGGGTTGGGATGATCCGTATGTTCCACG 1778
||||| |||||||| || ||| |||| |||||||| ||||||||||| |||||||| ||
Sbjct 1737 ACTTTCACATGAAGCCGACGGCCTAATCTTTCAGGGCTGGGATGATCCTTATGTTCCCCG 1796
Query 1779 AACCCATAAAGGTCTACTGAAGTGGAAGTATGCAGAAATGAACTCAGTAGACTTTCTGTA 1838
|||||| ||||||| |||||||||||||| |||| |||||||| || |||||||| ||
Sbjct 1797 CACCCATGAAGGTCTGTTGAAGTGGAAGTATCCAGAGATGAACTCGGTTGACTTTCTATA 1856
Query 1839 TGAG-ATGGGTGAGGAAGAGGGGCGTGGTTTCCTCTTCTTGCATGAAAGAGGGAAGAAAA 1897
||| | || |||| | | || ||||| | |||| |||| |||||||||||||||||
Sbjct 1857 CGAGCA-GGATGAG-A-GTGGC-CGTGGAATGCTCTCCTTGTTTGAAAGAGGGAAGAAAA 1912
Query 1898 AGCTTATGGAAGG-ATATTCAGTTGAGTTTAGAGATGATTCGGACCCGTCA-AGTTACAA 1955
||| |||||| || | |||| |||| |||||||||||||| ||||| || ||| ||
Sbjct 1913 AGCATATGGATGGGA-ATTCTGTTGTTTTTAGAGATGATTCAGACCCTTCCGAGT-ACTC 1970
Query 1956 TGGGAAGATTGTAGAATGTGCTTGGGATAAGGATAAGAAAGTTTGGTTTAGCATGAGGAT 2015
||||||||||||||||||| |||||||| ||||| ||||||| ||| | |||||| || |
Sbjct 1971 TGGGAAGATTGTAGAATGTTCTTGGGATCAGGATGAGAAAGTCTGGGTAAGCATGCGGGT 2030
Query 2016 CAGAGTTGACAAAACTACACCAAATGATATCAACACTG-CTCGTAAGGTGATAAAGA-GC 2073
||| || || ||| | || || ||||||||||||||| | | |||||||| | || ||
Sbjct 2031 CAGGGTCGATAAATCAACGCCTAATGATATCAACACTTACA-GAAAGGTGATGA-GAAGC 2088
Query 2074 ATAAATGATAACATCACTGAGGAGGTTTTGCTTCAGGAAATAAGAGAGATCATTCGTCTC 2133
|| || || |||||||| ||||| || ||||| ||||| ||||| ||||| || ||| |
Sbjct 2089 ATCAAGGACAACATCACAGAGGAAGTGTTGCTGCAGGAGATAAGGGAGATAATCCGTTTG 2148
Query 2134 CCAATGTACGCTGACCGCATTCGAAATG-ATAGTCAA-GCTGCCCGCCGC 2181
|| ||||| || ||||| || | ||||| |||| ||| ||||| || |||
Sbjct 2149 CCTATGTATGCGGACCGTATCC-AAATGGATAG-CAAAGCTGCGCGTCGC 2196
> Ahg942438 jgi|Araly1|942438|scaffold_602982.1
Length=1872
Score = 769 bits (416), Expect = 0.0
Identities = 1364/1794 (76%), Gaps = 175/1794 (10%)
Strand=Plus/Plus
Query 424 CCTCAGGGTTGGCTAGATTGTCCTGGTTTTGGTCTGGAGATAGGATGT-ATTATTCCTTC 482
||||| |||||| ||||||||||| | ||||||| || || |||| | || ||||||||
Sbjct 125 CCTCAAGGTTGGTTAGATTGTCCTCGCTTTGGTCAAGATATTGGAT-TCATCATTCCTTC 183
Query 483 TAAGGTTCCACTTAGTGAATCTTACAACGAACATGTTCCTCCTGGTAAAAGATACTCTTT 542
|| ||||| || |||||||| ||||| || ||||||| |||| ||||||||| |||
Sbjct 184 AAAAGTTCCTCTCAGTGAATCGTACAATGATTGTGTTCCTTCTGGCAAAAGATACAATTT 243
Query 543 CAAACAGGTGGTTCGTAACCAGAGAATTAATGGAAGAAAACTTGGTCTAGTCATTGATCT 602
|||| | ||||||| || || | || ||| | | |||||||| || ||||||||
Sbjct 244 CAAAGA-GTGGTTC---ACTAGTG---GAA-GGACG-AGGCTTGGTCTTGTGATTGATCT 294
Query 603 TACTAATACAACTCGTTACTA-C--CCT-ACATTAGACTTAAAGA-AGGATGGCATCAAG 657
||| ||||||||||||||||| | ||| ||| || || |||| | | || ||||||
Sbjct 295 TACCAATACAACTCGTTACTATCATCCTAACA-CCGAGTT-AAGACATAACGGTATCAAG 352
Query 658 CATGTTAAGATTGC-ATGCAGGGGTCGTGATGCTGTGCCTGATAATGTCTCTGTAAACAC 716
||||||||||| | ||||| ||||||||||||||||| |||||||| || ||||||||
Sbjct 353 TATGTTAAGATT-CGTTGCAGTGGTCGTGATGCTGTGCCGGATAATGTGTCGGTAAACAC 411
Query 717 CTTTGTCAACGAGGTT-CTGCAGTTCGTCCTTAATCAAAAAC-ACGCAAAGAAGTATGTC 774
||||| |||||||| | ||||||| | || ||| | || ||||||||||
Sbjct 412 ATTTGTTTACGAGGTTAAT-CAGTTCG------A-GAATAACTTCTCACAGAAGTATGTT 463
Query 775 CTCGTCCACTGTACACATGGGCATAATCGGACAGGGTTCATGATAGTTCATTATCTCATG 834
|| || || ||||| || || |||||||| |||||||| ||||| |||||||| || |||
Sbjct 464 CTTGTGCATTGTACTCACGGACATAATCGTACAGGGTTTATGATTGTTCATTACCTTATG 523
Query 835 CGCTCTATG-CCAACGATGAACGTTACACAGGCATTGAAGTTGTTTTCTGATGCCCGCCC 893
|| |||| | || | ||||| |||||| | || ||||| ||||||| ||||| |||||
Sbjct 524 CGGTCTA-GACCGATGATGAGTGTTACAGAAGCCTTGAAAATGTTTTCCGATGCTCGCCC 582
Query 894 ACCTGGGATTTATAAACCAGATTATATTGATGCTTTATACACTTTTTATCACGAA-ATAA 952
|||||||| |||||||| ||||| ||||||||| |||||| ||||||||| ||| |||
Sbjct 583 GCCTGGGATCTATAAACCCGATTACATTGATGCTCTATACAGTTTTTATCATGAAGTTAA 642
Query 953 AGCCTGAAAGTGTTACT-TGCCCACCAACTCCTGAATGGAAGAGGTCTGCCGAGCTTGAT 1011
| ||||| ||||||| | || |||||||||||||||||||||||||||| || | |
Sbjct 643 A-CCTGAGAGTGTTA-TATGTCCACCAACTCCTGAATGGAAGAGGTCTGAAGAA---G-T 696
Query 1012 CTTAATGGTGAAGCTGTTCAAgatgatgatgatgatgatTCTCCGCCTGACCCTGT--T- 1068
| || | | | | || ||||||||||||| | || | || ||||||| |
Sbjct 697 -T-AA-----A-G-T---C--GACGATGATGATGATGCT-CT--GTCTTACCCTGTAGTG 739
Query 1069 CAAG-AAATCAATCAGGAG-A-A-TGTGAAGA--T-GTCAAATGATGACACTTTGGGTGA 1121
|||| ||| |||||||||| | | |||||||| | ||| |||||||| | |||||| ||
Sbjct 740 CAAGGAAA-CAATCAGGAGGAGAATGTGAAGAAGTTGTCGAATGATGATATTTTGGGGGA 798
Query 1122 TGAAATACCCCATTATCAGGAGGAAGCTTACCGGCAATTCTGTTATAAAATGCTTATGAT 1181
||| |||||| || ||| |||| |||||| |||||| | | | | |||||
Sbjct 799 TGACATACCCTATGGTCAAGAGGTTTCTTACCAGCAATT-----A-A---T--TAATGAT 847
Query 1182 GAATGTTGGGGGAAGAGGATT-TATGCAATTCCCAGGTTCGCACCCTGTATCATTAGACA 1240
| || || || | || |||||| ||||| || |||||||||||||| |||| ||
Sbjct 848 -A-TGCTG----AATAT--TTCTATGCAGTTCCCTGGCTCGCACCCTGTATCGTTAGGCA 899
Query 1241 GGGAGAGT-TTGCAACTTTTGAGGCAGCGATACTATTATGCGACATGGAAGGCAGATGGA 1299
||||| | |||||||| ||||||||| | |||||||| |||||||||||||||||||||
Sbjct 900 GGGAG-GCATTGCAACTCTTGAGGCAGAGGTACTATTACGCGACATGGAAGGCAGATGGA 958
Query 1300 ACACGTTATATGATGCTCTTAACTATAGATGGGTGCTATTTGAT-AGATAG-GAGCTTTA 1357
|| || |||||||||||||| |||| ||||||||| ||| || | | |||| ||| ||||
Sbjct 959 ACGCGGTATATGATGCTCTTGACTAGAGATGGGTGTTATCTGGTTA-ATAGAGAG-TTTA 1016
Query 1358 -AGTTTCGGAGGGTACAGATGCGTTTTCCCT-GTAAGCACTCACGTGAGGGAATTTCTGA 1415
| ||| | |||||||| ||||| || |||| ||||| || || ||| || || |
Sbjct 1017 GA-TTTAGAAGGGTACAAATGCGGTT-CCCTTGTAAGTACG-ACCCGAGTGA-TT----A 1068
Query 1416 TAAAGTGCATCACTACACTTTGCTTGATGGAGAGATGGTCATAGATACCCC-GACAGGTG 1474
|||||||||||| ||||| |||||||||||||||||||| ||||| || || ||||
Sbjct 1069 TAAAGTGCATCATTACACATTGCTTGATGGAGAGATGGTTATAGACACATTTGA--GGTG 1126
Query 1475 --AGCAAGG-GGAGGCAAG-GAGGAGGTATCTCGTATATGATATGGTAGCAATCAATGGT 1530
|| |||| || | || | ||||||||| ||||| |||||| ||||||| || |||||
Sbjct 1127 GGAGGAAGGCGGTGTCAGGCGAGGAGGTACCTCGTGTATGATTTGGTAGCGATTAATGG- 1185
Query 1531 G-AATCAGTTGTAGAGCGGACTTTCT-GTGAAAGATGGAACATG-TTCGTGCGTGAGGTG 1587
| ||||||| | ||||||| |||| | ||||||||||||| || || | | | ||||||
Sbjct 1186 GCAATCAGTGGCAGAGCGGCCTTT-TAGTGAAAGATGGAATATTCTT-GAGAGAGAGGTG 1243
Query 1588 ATCGGACCTCG-AGCAGCTGAGAAGC---TCA-GAAGTCATTGCTACAGATATGACCTTG 1642
||| |||| || | | | ||||||| | | ||| |||||| || ||||| || | |
Sbjct 1244 ATCAGACCGCGTAAC-GATGAGAAGAAGGTTATGAA-TCATTGGTATAGATACGAGATGG 1301
Query 1643 AGCCTTTTGCGGTACGGATGAAGGGTTTCTGGTTACTTTCTACTGTTGAGAAGCTGTTGA 1702
||||||||| ||||||||| ||| ||| || ||||| ||| |||| | || | |
Sbjct 1302 AGCCTTTTGGGGTACGGATCAAGCCTTTTTGTTTACTCTCTGCTGT-G-GA-G------A 1352
Query 1703 AGAATACCATTCCATCGCTTTCGCATGAAGCAGATGG-CTTAATATTTCA-GGGTTGGGA 1760
||| | | |||||||||||||||||| |||| || || ||||||||| |||| ||||
Sbjct 1353 AGA-T----T-CCATCGCTTTCGCATGAAACAGACGGTCT-AATATTTCAAGGGT-GGGA 1404
Query 1761 TGATCCGTATGTTCCACG-AACCCATAAAGGTCTACTGAAGTGGAAGTATGCAGAAATGA 1819
||||| |||||| || ||| | | |||||| |||| ||||||| || |||| |
Sbjct 1405 CGATCCTTATGTTTT-CGGAACGGACCACGGTCTATTGAAATGGAAGTTTGTGGAAAC-A 1462
Query 1820 ACTCAGTAGACTTTCTGTATGAGATGGGTGAGGAAG-AGGGGCGTGGTTTCCTCTTCTTG 1878
|| | || ||||||| ||| |||| | ||| | |||||| | |||||||||
Sbjct 1463 -CT---T-GATTTTCTGTTTGACATGG---AC-AAGTATGGGCGTCAAATGCTCTTCTTG 1513
Query 1879 CATGAAAGAGGGAAGAAAAAGCTTATGGAAGGATATTCAGTTGAGTTTAGAGATGAT--T 1936
|| ||| | ||||||| |||||||||||||| ||||| ||||| ||||||| |||| |
Sbjct 1514 CAAGAACGTGGGAAGATGAAGCTTATGGAAGGCTATTCCGTTGAATTTAGAGGTGATGGT 1573
Query 1937 CGG-AC-----CC-GTCAAGTTACAATGGGAAGATTGTAGAATGTGCTTGGGATAAGGAT 1989
|| || || | | |||||| ||| ||||||||||| ||| | |||||||||||
Sbjct 1574 TGGGACAATAACCCGGCCAGTTACTGTGGAAAGATTGTAGAGTGTTCATGGGATAAGGAG 1633
Query 1990 AAGAAAGTTTGGTTTAGCATGAGGATCAGAGTTGACAAAACTACACCAAATGATATC--A 2047
|||||||| ||| |||| || ||||||||||||| ||| ||| ||| |||| ||| |
Sbjct 1634 AAGAAAGTATGGGTTAGTTTGCGGATCAGAGTTGATAAATCTAAACCGAATGGTATTGGA 1693
Query 2048 ACACTGCTCGTAAG-GTGATAAAGAGCATAAATGATAACATCACTGA-GGAGGTTTTGCT 2105
|| | | || || | ||||||||| ||||||| ||| ||||||| || ||| ||||||||
Sbjct 1694 AC-CGG-TCATA-GCGTGATAAAGTGCATAAAGGATGACATCAC-GAAGGACGTTTTGCT 1749
Query 2106 TCAGGAAAT-AAGAGAGATCATTCGTCTCCCAATGTACGCTGACCGCATTCGAA 2158
|||| || || | |||| | ||||| |||||||||| ||| ||||||||||
Sbjct 1750 GGAGGAGATCAAAA-AGATTACCCGTCTTCCAATGTACGTTGATCGCATTCGAA 1802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89054992810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5