BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01300.1
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892083 jgi|Araly1|892083|Al_scaffold_0006_79 765 0.0
> Ahg892083 jgi|Araly1|892083|Al_scaffold_0006_79
Length=489
Score = 765 bits (414), Expect = 0.0
Identities = 466/491 (95%), Gaps = 4/491 (1%)
Strand=Plus/Plus
Query 78 ATGTCGAGTGAGGAGTTGAGGCTGGTTTCGCCGACGATAGACAACGATGGGAAGTTGCCG 137
||||| ||||||||||| ||||||||||||||||||||||||||||| || || ||||||
Sbjct 1 ATGTCAAGTGAGGAGTTCAGGCTGGTTTCGCCGACGATAGACAACGACGGTAATTTGCCG 60
Query 138 AGAAAGTATA-CGATGGCAGGTCAAGGTGTTAAGAAAGA-CATCTCTCCTCCTCTTGAAT 195
|||||||||| | | || ||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 61 AGAAAGTATACCCA-GGGAGGTCAAGGTGCTAAGAAAGATC-TCTCTCCTCCTCTTGAAT 118
Query 196 GGTACAACGTTCCAGAAGGTACAAAAACGCTAGCTTTGGTGGTGGAAGACATCGATGCGC 255
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 119 GGTACAACGTTCCAGAAGGTACAAAATCGCTAGCATTGGTGGTGGAAGACATCGATGCGC 178
Query 256 CTGATCCTAGTGGCCCGCTGGTGCCATGGACGGTGTGGGTTGTCGTCGACATACCACCAG 315
| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CAGATCCTAGTGGACCGCTCGTGCCATGGACGGTGTGGGTTGTCGTCGACATACCACCAG 238
Query 316 AGATGAAAGGCCTACCGGAAGGATATTCCGGCAATGAGGATCAGACTACCGGTATTCGGG 375
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 239 AGATGAAAGGCCTACCGGAAGGATATTCCGGCACTGAGGAGCAGACTACCGGTATTCGGG 298
Query 376 AAGGGAACAACGATCACAAGATTCCGGGATGGCGTGGACCTCTCTTACCTAGTCACGGTC 435
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 299 AAGGGAACAACGATCACAAGATTCCGGGATGGCGTGGGCCTCTCTTGCCTAGTCACGGTC 358
Query 436 ACCGTTTTCAGTTCAAGCTTTTTGCTCTCGATGATAAACCCAAGATTGGTCACACGGTGA 495
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 359 ACCGTTTTCAGTTCAAGCTTTTCGCTCTCGATGATACACCCAAGATTGGTCACACGGTGA 418
Query 496 CGAAAGAGAGATTGCTGATCGCAATTGAAGGGCACGTGCTAGGAGAAGCCATCTTGACGT 555
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CAAAAGAGAGATTGCTGATCGCAATTGAAGGGCACGTGCTAGGAGAAGCCATCTTGACGT 478
Query 556 GTTTGGCCTAA 566
|| ||||||||
Sbjct 479 GTGTGGCCTAA 489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26724164817
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5