BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01310.1
Length=2739
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486946 jgi|Araly1|486946|fgenesh2_kg.6__80__AT5G01310.1 3199 0.0
> Ahg486946 jgi|Araly1|486946|fgenesh2_kg.6__80__AT5G01310.1
Length=2697
Score = 3199 bits (1732), Expect = 0.0
Identities = 1959/2069 (95%), Gaps = 14/2069 (1%)
Strand=Plus/Plus
Query 670 AAAGCGAAGCAGATAGTGGTGCTTCTGATTGGTCCACCAGGAAGCGGCAAATCGACGTTT 729
|||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||
Sbjct 625 AAAGCGAAGCAGATAGTGGTTCTTCTGATTGGTCCGCCAGGAAGCTGCAAATCGACGTTT 684
Query 730 TGTGACACCGCAATGCGTTCCTCTCACCGCCCTTGGTCTCGTATCTGCCAGGACATTGTT 789
|||||||| | ||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 685 TGTGACACTGTAATGCGTTCCTCTCACCGCCCTTGGTCTCGTATTTGCCAGGACATTATT 744
Query 790 AACAATGGCAAAGCTGGAACAAAGGCTCAGTGTTTAAAGATGGCTACAGATTCTCTTAGG 849
|||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 745 AACAATGGGAAAGCTGGAACAAAGGCTCAGTGTTTAAAGATGGCAACAGAATCCCTTAGG 804
Query 850 GAAGGCAAGAGCGTCTTTATAGACAGATGCAATCTTGACAGGGAGCAACGTTCAGAGTTT 909
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 805 GAAGGAAAGAGCGTCTTTATAGACAGATGCAATCTTGACAGGGAGCAACGCTCGGAGTTT 864
Query 910 ATTAAGCTTGGTGGTCCT-G-AGTTCGAAGTTCATGCAGTGGTTCTGGAGCTTCCTGCTC 967
|||||||| ||||||||| | | || ||||||||||||||||||||||||||| ||||||
Sbjct 865 ATTAAGCTCGGTGGTCCTGGCA-TT-GAAGTTCATGCAGTGGTTCTGGAGCTTTCTGCTC 922
Query 968 AGGTTTGTATATCTAGATCAGTTAAAAGAACTGGTCATGAAGGAAATCTACAAGGTGGAA 1027
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 923 AGGTTTGTATATCTAGATCAGTCAAAAGAACTGGTCATGAAGGAAATCTACAAGGGGGAC 982
Query 1028 GAGCTGCAGCTGTTGTGAATAAGATGCTTCAGAGTAAGGAACTTCCCAAAGTGAATGAAG 1087
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 983 GAGCTGCAGCTGTTGTGAATAAGATGCTTCAGAGTAAGGAACTTCCGATGGTGAATGAAG 1042
Query 1088 GGTTTTCTCGGATTATGTTTTGTTACAGTGACGCTGATGTTGATAATGCTGTTAACATGT 1147
||||||||||||||||||||||||||| ||||| |||||||| ||||||| ||||| |
Sbjct 1043 GGTTTTCTCGGATTATGTTTTGTTACAACGACGCGGATGTTGAAAATGCTGGTAACACAT 1102
Query 1148 ATAACAAGCTTGGTCCAATGGATACCCTTCCTTCTGGCTGTTTTGGCGaaaaaaaaTTAG 1207
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1103 ACAACAAGCTTGGTCCAATGGATACTCTTCCTTCTGGCTGTTTTGGCGAAAAAAAATCAG 1162
Query 1208 ATACTAAAAGCCAACCCGGTATAATGAAGTTCTTTAAGAAAGTCAGTGCTCTGCCTGCTT 1267
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1163 ACACTAAAAGCCAACCCGGTATAATGAAGTTCTTTAAGAAAGTCAATGCTCTGCCTGGTT 1222
Query 1268 CATCTTCTAATGAAGCTACTAACACAACTCGGAAA-GCTGATGAAATGAC-AGCAAATGT 1325
||||||||||||||||| ||||| |||| | ||| | | |||||| ||| || ||||||
Sbjct 1223 CATCTTCTAATGAAGCTGCTAACGCAACAC-AAAACGATAATGAAAAGACTAG-AAATGT 1280
Query 1326 CCGAGTTTCGCCAGTCAAGCTTGGTTCTGCTGATATTGTACCTACACTGGCATTCCCATC 1385
|||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1281 TAGAGTTTCGCCAGCCAAGCTTGGTTCTGCTGATATTGTTCCTACACTGGCTTTCCCATC 1340
Query 1386 AATTTCGACTGCGGATTTTCAGTTTGATCTTGAAAAGGCTTCTGATATCATTGTGGAGAA 1445
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1341 CATTTCGACTGCGGATTTTCAGTTTGATCTTGAAAAGGCATCTGATATCATTGTCGAGAA 1400
Query 1446 AGCAGAGGAGTTCTTGTCTAAACTTGGGACTGCGCGTCTCGTCTTGGTGGACTTGAGCCG 1505
||||||||| |||||| |||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 1401 AGCAGAGGAATTCTTGCCTAAACTTGGGACTGCACGTCTTGTCTTGGTAGACTTGAGCCA 1460
Query 1506 CGGGTCAAAGATTCTATCTCTGGTCAAGGCTAAGGCTTCTCAGAAGAACATTGATTCAGC 1565
|||||||||||||| ||||||||||| ||||||||| |||||||||||||||| |||||
Sbjct 1461 AGGGTCAAAGATTCTGTCTCTGGTCAAAGCTAAGGCTGCTCAGAAGAACATTGACTCAGC 1520
Query 1566 GAAATTCTTCACATTTGTTGGGGACATAACTAAGCTTCGTTCTGAAGGTGGTCTACACTG 1625
|| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1521 GAGATTCTTCACATTTGTCGGGGACATAACTAAGCTTCGTTCCGAAGGTGGTCTACACTG 1580
Query 1626 TAATGTCATAGCTAATGCTACTAACTGGCGGCTTAAACCTGGAGGTGGAGGTGTGAATGC 1685
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1581 CAATGTTATAGCTAATGCTACTAACTGGCGGCTTAAACCTGGAGGTGGAGGTGTGAATGC 1640
Query 1686 AGCAATATTCAAAGCTGCTGGTCCAGATCTTGAGACTGCGACAAGAGTACGAGCAAACAC 1745
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1641 AGCAATATTCAAAGCTGCTGGTCCAGATCTTGAGGCTGCGACAAGAGTACGAGCAAACAC 1700
Query 1746 TCTTCTTCCTGGAAAAGCCGTGGTAGTTCCTCTTCCTTCTACTTGTCCATTACACAATGC 1805
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1701 TCTTCTTCCTGGAAAAGCCGCGGTAGTTCCTCTTCCTTCTACTTGTCCATTACACAATGC 1760
Query 1806 AGAAGGAATTACACATGTCATACATGTTCTAGGACCAAACATGAACCCAAACCGACCAGA 1865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1761 AGAAGGAATTACACATGTCATACATGTTCTAGGACCAAACATGAACCCAAACCGACCAGA 1820
Query 1866 CAACCTTAACAACGACTACACCAAGGGGTGCAAAACTCTCCGGGAAGCTTACACATCTCT 1925
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1821 CAACCTTAACAACGACTACACCAAGGGGTGCAAAACTCTCCGGGAGGCTTACACATCTCT 1880
Query 1926 ATTTGAAGGTTTTCTATCAGTAGTACAGGATCAATCGAAGTTGCCCAAACGAAGCAGTCA 1985
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||
Sbjct 1881 ATTTGAAGGTTTTCTATCAGTAGTACAGGATCAATCAAAGTTGCCTAAACGAAGCAATCA 1940
Query 1986 AACAGCTGT-GTCAGATTCTGGTGAGGATATTAAGGAAGACTCTGAGAGAAACAAAAAGT 2044
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1941 AACAGC-GTTGTCAGATTCTGGTGAGGATATTAAGGAAGACTCTGAGAGAAACAAAAAGT 1999
Query 2045 ACAAAGGATCACAAGATAAGGCCGTAACTAATAATTTGGAATCAGAGTCTCTGGAGGACA 2104
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 2000 ACAAAGGATCACAAGATAAGGCCGTAACTAATAATTTGGAATCAGGGTCTCTGGAGGATA 2059
Query 2105 CAAGAGGCAGTGGAAAGAAGATGAGTAAAGGATGGAACACATGGGCATTGGCTCTCCACA 2164
|||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 2060 CAAGAGACAGTGGAAAGAAGATGAGTAAAGGGTGGAGCACATGGGCATTGGCTCTCCACA 2119
Query 2165 GCATCGCGATGCACCCAGAGAGACACGAGAATGTCGTGCTTGAATATTT-AGACAACATC 2223
|||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct 2120 GCATCGCGATGCACCCAGAGAGACACGAGAATGTCGTGCTAGAAT-TTTCAGACAACATC 2178
Query 2224 GTTGTCATAAACGACCAGTACCCAAAGGCGCGGAAACACGTGCTAGTACTGGCGAGACAG 2283
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2179 GTTGTGATAAACGACCAGTACCCAAAGGCGCGGAAACACGTGCTAGTACTGGCGAGACAG 2238
Query 2284 GAGAGTCTAGATGGGCTAGAAGATGTTCGCAAAGAGAATCTTCAACTTCTGCAGGAAATG 2343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2239 GAGAGTCTAGATGGGCTAGAAGATGTTCGCAAAGAGAATCTTCAACTTCTGCAGGAAATG 2298
Query 2344 CACAATGTTGGTCTGAAATGGGTTGATAGATTCCAGAACGAGGATGCATCTCTTATCTTC 2403
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2299 CACAATGTTGGTCTGAAATGGGTAGATAGATTCCAGAACGAGGATGCATCTCTTATCTTC 2358
Query 2404 CGCCTTGGATATCACTCGGTTCCCTCGATGCGACAACTACACTTACACGTTATAAGCCAA 2463
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2359 CGCCTTGGATATCACTCGGTTCCGTCGATGCGACAACTACACTTACACGTTATAAGCCAA 2418
Query 2464 GACTTTAATTCAGATAGTTTGAAGAACAAGAAACACTGGAACTCTTTCACGA-CCTCGTT 2522
|||||| |||||||||||||||||||||| |||||||||||||||||||| | |||||||
Sbjct 2419 GACTTTGATTCAGATAGTTTGAAGAACAAAAAACACTGGAACTCTTTCAC-ATCCTCGTT 2477
Query 2523 CTTCCGTGACTCAGTTGATGTACTTGAAGAGGTCAACAGCCAAGGCAAGGCCAATGTGGC 2582
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2478 CTTTCGTGACTCAGTTGATGTACTTGAAGAGGTCAAGAGCCAAGGCAAGGCCAATGTGGC 2537
Query 2583 GAGCGAAGATCTGTTGAAAGGTGAGCTGCGTTGCAATCGGTGTAGAAGCGCACACCCAAA 2642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2538 GAGCGAAGATCTGTTGAAAGGTGAGCTGCGTTGCAATCGGTGTAGAAGCGCACACCCAAA 2597
Query 2643 TATTCCAAAACTTAAATCACATGTCAGAAGCTGCCATTCTCAATTTCCAGACCATTTACT 2702
|||||| ||||| ||||||||||| |||| ||| | |||||| ||||| |||||| ||||
Sbjct 2598 TATTCCCAAACTCAAATCACATGTTAGAAACTGTCGTTCTCAGTTTCCTGACCATCTACT 2657
Query 2703 CCAAAACAATCGCCTTGTGGCTAGAGCAG 2731
|||||||||||||||||||||| || |||
Sbjct 2658 CCAAAACAATCGCCTTGTGGCTCGACCAG 2686
Score = 737 bits (399), Expect = 0.0
Identities = 495/541 (91%), Gaps = 7/541 (1%)
Strand=Plus/Plus
Query 1 ATGGATGATTTCAATCTTCGTAGCGAAAACCCTAATTCATCATCCACCACTTCCTCATCC 60
||||||||||| ||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGATGATTTTAATCTTCGTGGCCAAAACCCTAATTCATCATCCGCCACTTCCTCATCC 60
Query 61 TCTTCCTCTTTCCACCGTCACAAGAGCGAAACCGGAAACACAAAACGGTCAAGGTCAACG 120
||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TCTTCTTCTTTGCACGGTCACAAGAGCGAAACCGGAAACACAAAACGGTCAAGATCAACG 120
Query 121 TCCACGTTATCGACGGACCCTCAGAGCGTGGCGGCTCGCGACAGACGGCACCGAATTAGC 180
||||||||||| |||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 121 TCCACGTTATCAACGGACCCTCAGAGCGTGGCGGCTCGTGAGAGACGGCACCGAATCAGC 180
Query 181 GACCGTTTCAAGATTTTACAAAGCATGGTCCCTGGTGGTGCGAAGATGGACACTGTATCT 240
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GAGCGTTTCAAGATTCTACAAAGCATGGTCCCTGGTGGTGCGAAGATGGACACTGTCTCT 240
Query 241 ATGCTTGACGAAGCCATTAGCTACGTCAAGTTCTTGAAGGCTCAGATCTGGTATCACCAA 300
|||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 241 ATGCTTGAAGAAGCCATTAGGTACGTCAAGTTCTTGAAGGCTCAGATCTGGTTTCACCAA 300
Query 301 AACATGCTTCTCTTCATAAACGACCACGAAACTACATCATCTTGTACTTACTCTCCCGGC 360
||||||||||||||| ||||| ||||||||||||| ||||||||| | |||||||||||
Sbjct 301 AACATGCTTCTCTTCCTAAACAACCACGAAACTACGTCATCTTGT--T-ACTCTCCCGGC 357
Query 361 GCTGGAGAATTTGGACCGAAACTCTTTGGTTATGATGACGATTATGCCCCTATAATGGAC 420
|| |||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||
Sbjct 358 GCCGGAGAATTTGGACCAAAACTATTTGGTTATGATGACGATTATGCCCCTATAGTGGAG 417
Query 421 ACATATTCACAAGGCGTGCCACTTACGGTTGCGGACTCGAAGTATACGCCGTGGTTTGGT 480
||| ||||||||||| |||||||||||||| ||||||| || |||||||||||||||||
Sbjct 418 ACAAATTCACAAGGCATGCCACTTACGGTTATGGACTCGGAGAATACGCCGTGGTTTGGT 477
Query 481 TCGGTTGATGATGAGCAAGAAC-A---CGTCACGTATTTCAAATACAGGCGTGCCACACG 536
|||| | ||||||||||||||| | || |||||||| |||| ||| ||||| ||||||
Sbjct 478 TCGGCTCATGATGAGCAAGAACGAATACGCCACGTATTCCAAACACACGCGTGTCACACG 537
Query 537 A 537
|
Sbjct 538 A 538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103338834685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5