BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01320.1
Length=1994
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486945 jgi|Araly1|486945|fgenesh2_kg.6__79__AT5G01320.1 2885 0.0
Ahg349471 jgi|Araly1|349471|fgenesh1_pg.C_scaffold_6000064 2399 0.0
Ahg491381 jgi|Araly1|491381|fgenesh2_kg.7__814__AT4G33070.1 2012 0.0
> Ahg486945 jgi|Araly1|486945|fgenesh2_kg.6__79__AT5G01320.1
Length=1952
Score = 2885 bits (1562), Expect = 0.0
Identities = 1810/1932 (94%), Gaps = 8/1932 (0%)
Strand=Plus/Plus
Query 1 ATGGACACCAAAATTGGAGCCATCGACACGTGTAAGCCAACAACTGGTGACATCGGAAGT 60
|||||||||||||| ||| |||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1 ATGGACACCAAAATAGGATCCATCGACACGTGTAAGCCAACAACTGGCGACGTCGGAAGT 60
Query 61 CCACCAAGCAACGCCGTCGCAACAATCCAAGACTCCGCTCCCATCACCACAACCTCCGAA 120
|| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 61 CCCCCAAGCAACGCCGTCGCAACAATCCAAGACTCCGCTCCCACCACCGCAACCTCCGAA 120
Query 121 TCGACTCTAGGACGTCACTTATCCCGCCGTCTTGTCCAAGCCGGAGTCACCGATGTTTTC 180
||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 121 GCGACTCTCGGACGTCACTTAGCCCGCCGTCTTGTCCAAGCCGGAGTCACCGACATTTTC 180
Query 181 TCTGTTCCCGGTGATTTCAACCTAACTCTTCTCGACCACCTCATCGCCGAGCCAGAGCTC 240
||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 181 TCTGTTCCCGGTGATTTTAACCTAACTCTTCTTGACCACCTCATCGCCGAACCAGAGCTC 240
Query 241 AACAACATCGGATGCTGTAACGAGCTTAACGCCGGTTACGCCGCCGATGGATACGCTCGA 300
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 AACAACATCGGATGCTGCAACGAGCTTAACGCCGGTTACGCCGCCGATGGTTACGCTCGA 300
Query 301 TCTCGTGGAGTCGGTGCTTGCGTCGTGACTTTCACCGTTGGTGGACTCAGCGTTTTGAAC 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 TCTCGTGGAGTCGGTGCTTGCGTCGTGACCTTCACCGTTGGTGGACTCAGCGTTTTGAAC 360
Query 361 GCTATCGCTGGTGCGTACAGTGAGAACCTACCAGTTATATGTATCGTTGGAGGTCCTAAC 420
|| ||||| ||||| ||||||||||| || ||||| || |||||||| ||||||||||||
Sbjct 361 GCGATCGCAGGTGCATACAGTGAGAATCTGCCAGTGATCTGTATCGTCGGAGGTCCTAAC 420
Query 421 TCCAACGATTTTGGCACTAACCGGATTCTTCATCACACCATCGGTTTACCTGACTTTAGC 480
||||| || |||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 421 TCCAATGACTTTGGCACAAACCGGATTCTTCATCACACCATTGGTTTACCTGATTTTAGC 480
Query 481 CAAGAGCTTAGGTGTTTCCAAACTGTTACTTGCTACCAGGCTGTGGTGAACAATTTGGAG 540
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 481 CAAGAGCTTAGGTGTTTCCAGACTGTTACTTGCTATCAGGCTGTGGTGAACAATTTGGAG 540
Query 541 GATGCTCATGAACAGATCGACAAGGCGATAGCAACAGCTTTGAAAGAGAGCAAGCCTGTG 600
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 541 GATGCTCATGAACAGATCGACAAGGCGATATCAACAGCTTTGAAAGAGAGCAAGCCTGTG 600
Query 601 TACATTAGCATCAGTTGCAACTTAGCTGCAACTCCTCATCCTACGTTTGCTCGTGATCCT 660
|||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 601 TACATTAGCATCAGCTGTAACTTAGCTGCGACTCCTCATCCTACATTTGCTCGTGATCCT 660
Query 661 GTCCCTTTTGACCTAACTCCTAGGATGAGCAACACGATGGGTTTAGAAGCTGCGGTGGAA 720
|||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 661 GTCCCTTTTGCCCTAACTCCAAGGATGAGCAACAAGATGGGTTTAGAAGCTGCGGTGGAA 720
Query 721 GCAACATTGGAGTTTCTGAACAAGGCAGTGAAGCCAGTTATGGTTGGTGGCCCAAAGTTG 780
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 721 GCAACATTGGAGTTTCTGAACAAGGCAGTGAAGCCAGTTATGGTTGGTGGTCCAAAGTTG 780
Query 781 CGTGTGGCTAAAGCAAGTGAGGCCTTTTTGGAGCTAGCTGATGCTTCAGGCTACCCTCTC 840
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 781 CGTGTGGCTAAAGCAAGTGATGCCTTTGTGGAGCTAGCTGATGCTTCAGGCTACCCTCTC 840
Query 841 GCAGTGATGCCTTCTACAAAAGGCCTTGTACCAGAGAACCATCCTCATTTCATTGGCACT 900
|| ||||||||||| |||||||| |||||||||||||||||||||| |||||||| |||
Sbjct 841 GCGGTGATGCCTTCGGCAAAAGGCTTTGTACCAGAGAACCATCCTCACTTCATTGGTACT 900
Query 901 TACTGGGGAGCAGTAAGCACACCTTTCTGCTCTGAGATTGTCGAATCTGCGGATGCTTAC 960
|||||||||||||| ||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 901 TACTGGGGAGCAGTGAGCACTCCGTTCTGCTCTGAGATTGTCGAATCTGCAGATGCTTAC 960
Query 961 ATCTTCGCAGGTCCAATCTTCAACGACTACAGCTCCGTAGGTTACTCTCTTCTCCTCAAG 1020
|| |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 961 ATTTTCGCAGGTCCAATATTCAACGACTACAGCTCCGTGGGTTACTCACTTCTCCTCAAG 1020
Query 1021 AAAGAAAAAGCAATAATTGTGCATCCTGATCGAGTCGTTGTGGCTAATGGTCCAACGTTT 1080
||||||||||| || |||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 1021 AAAGAAAAAGCCATCATTGTGCATCCTGACCGCGTCGTTGTGGCTAATGGTCCTACGTTT 1080
Query 1081 GGTTGCGTTCTGATGAGCGATTTCTTCAGGGAGTTGGCTAAGAGGGTTAAGCGTAACGAG 1140
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 1081 GGTTGCGTTCTGATGAGCGATTTCTTTAGGGAATTGGCTAAGAGGGTGAAGCGTAACGAG 1140
Query 1141 ACAGCTTATGAGAACTATGAGAGGATCTTTGTACCTGAAGGTAAGCCATTGAAATGCAAA 1200
|| |||||||||||||| | ||||||||||| |||||||||||||||||||||||||||
Sbjct 1141 ACCGCTTATGAGAACTACCATAGGATCTTTGTCCCTGAAGGTAAGCCATTGAAATGCAAA 1200
Query 1201 CC-AGGAGAGCCATTGAGGGTCAACGCAATGTTCCAACACATTCAGAAGATGCTCTCTAG 1259
|| ||| || || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CCTAGG-GAACCTTTGAGAGTCAACGCAATGTTCCAACACATTCAGAAGATGCTCTCTAG 1259
Query 1260 TGAAACCGCTGTGATTGCTGAAACTGGTGATTCTTGGTTCAATTGTCAGAAGCTAAAGCT 1319
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1260 TGAAACCGCTGTGATTGCTGAAACTGGTGATTCTTGGTTCAATTGCCAGAAGCTAAAGCT 1319
Query 1320 GCCTAAAGGATGTGGGTACGAGTTTCAGATGCAGTATGGATCCATTGGTTGGTCTGTTGG 1379
|||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1320 GCCTAAAGGATGTGGGTATGAGTTTCAGATGCAGTATGGATCAATTGGCTGGTCTGTTGG 1379
Query 1380 TGCGACTCTAGGATACGCCCAAGCAACCCCGGAGAAGAGAGTGTTGTCTTTCATTGGAGA 1439
||||||| ||||||| || || ||| | || ||||||||||||||||||||||| |||||
Sbjct 1380 TGCGACTTTAGGATATGCACAGGCATCACCAGAGAAGAGAGTGTTGTCTTTCATCGGAGA 1439
Query 1440 TGGGAGTTTCCAAGTGACTGCTCAGGACATATCCACGATGATTCGTAACGGACAGAAGGC 1499
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1440 CGGGAGTTTCCAAGTGACTGCTCAGGACATATCTACGATGATTCGTAACGGACAGAAGAC 1499
Query 1500 GATCATCTTCTTGATCAACAACGGTGGCTACACCATTGAAGTTGAGATTCATGATGGTCC 1559
||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1500 GATCATCTTCTTGATTAACAACGGTGGCTACACCATAGAAGTGGAGATTCATGATGGTCC 1559
Query 1560 TTACAATGTTATCAAGAACTGGAACTACACTGGTCTTGTCGATGCTATTCATAACGGTGA 1619
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TTACAATGTGATCAAGAACTGGAACTACACTGGTCTTGTCGATGCTATTCATAACGGTGA 1619
Query 1620 AGGAAAATGCTGGACCACAAAGGTGAGATACGAGGAGGAGTTAGTGGAAGCGATTAAGAC 1679
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 AGGCAAATGCTGGACCACAAAGGTGAGATACGAGGAGGAGTTAGTGGAAGCGATTAAGAC 1679
Query 1680 TGCGACAACGGAGAAGAAAGATAGTCTTTGTTTCATTGAAGTGATTGTTCACAAAGATGA 1739
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 CGCGACATTGGAGAAGAAAGATAGTCTTTGTTTCATTGAAGTGATTGTTCACAAAGATGA 1739
Query 1740 TACAAGCAAAGAGTTGCTTGAGTGGGGATCTCGCGTCTCAGCTGCTAATGGTCGTCCTCC 1799
||| ||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||
Sbjct 1740 TACGAGCAAAGAGTTGCTTGAGTGGGGCTCTCGCGTCGCTGCTGCTAATGGTCGTCCTCC 1799
Query 1800 CAATCCTCAGTAGAAGCAAGAGAAAAGAATCTTGAGTGTGACTCAAGCATCTCTCGTTTC 1859
|||||| ||||||||||||||||| |||||||||||||| ||||| ||||| |||||||
Sbjct 1800 CAATCCCCAGTAGAAGCAAGAGAACCGAATCTTGAGTGTGGCTCAACCATCTGTCGTTTC 1859
Query 1860 TTTGCAATTGAATTAGATTGTTTTCTGTTCGAATT---TTCGAATTTTCGACCGTTGGTT 1916
||| |||||||||| || |||| | ||| | | ||||||||||||||||||||||
Sbjct 1860 TTTCCAATTGAATTT--TT-TTTTATTTTCCTACTGGCTTCGAATTTTCGACCGTTGGTT 1916
Query 1917 TTAATTGCTTTT 1928
||||||||||||
Sbjct 1917 TTAATTGCTTTT 1928
> Ahg349471 jgi|Araly1|349471|fgenesh1_pg.C_scaffold_6000064
Length=1779
Score = 2399 bits (1299), Expect = 0.0
Identities = 1623/1778 (91%), Gaps = 28/1778 (2%)
Strand=Plus/Plus
Query 55 GGAAGTCCACCAAGCAACGCCGTCGCAACAATCCAAGACTCCGCTCCCATCA-C-CA--C 110
||||||| |||||| ||| ||||||| |||||||||||||||||||||| || | || |
Sbjct 10 GGAAGTCTACCAAGTAACTCCGTCGCGACAATCCAAGACTCCGCTCCCACCACCGCAGCC 69
Query 111 A-A--C--CT-C-C-GAATCGACTCTAGGACGTCACTTATCCCGCCGTCTTGTCCAAGCC 162
| | | || | | || ||||||| |||||||||||| ||||||||||||||||||||
Sbjct 70 ATACTCGGCTCCTCTCAAGCGACTCTCGGACGTCACTTAGCCCGCCGTCTTGTCCAAGCC 129
Query 163 GGAGTCACCGATGTTTTCTCTGTTCCCGGTGATTTCAACCTAACTCTTCTCGACCACCTC 222
||||||| |||| |||||||||||||||| |||||||||||| |||| || ||||| |||
Sbjct 130 GGAGTCAGCGATATTTTCTCTGTTCCCGGGGATTTCAACCTATCTCTGCTTGACCAGCTC 189
Query 223 ATCGCCGAGCCAGAGCTCAACAACATCGGATGCTGTAACGAGCTTAACGCCGGTTACGCC 282
|||||||| || ||||||||||||||||| ||||| |||||||||||||| || |||||
Sbjct 190 ATCGCCGACCCGGAGCTCAACAACATCGGCTGCTGCAACGAGCTTAACGCTGGATACGCT 249
Query 283 GCCGATGGATACGCTCGATCTCGTGGAGTCGGTGCTTGCGTCGTGACTTTCACCGTTGGT 342
||||| || |||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 250 GCCGACGGTTACGCTCGATCTCGTGGAGTTGGTGCTTGTGTCGTGACTTTCACCGTTGGT 309
Query 343 GGACTCAGCGTTTTGAACGCTATCGCTGGTGCGTACAGTGAGAACCTACCAGTTATATGT 402
|||||||||||||||||||| ||||||||||| ||||||||||| || ||||| || |||
Sbjct 310 GGACTCAGCGTTTTGAACGCGATCGCTGGTGCATACAGTGAGAATCTGCCAGTGATCTGT 369
Query 403 ATCGTTGGAGGTCCTAACTCCAACGATTTTGGCACTAACCGGATTCTTCATCACACCATC 462
||||| ||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 370 ATCGTCGGAGGTCCTAACTCCAATGACTTTGGCACAAACCGGATTCTTCATCACACCATT 429
Query 463 GGTTTACCTGACTTTAGCCAAGAGCTTAGGTGTTTCCAAACTGTTACTTGCTACCAGGCT 522
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 430 GGTTTACCTGATTTTAGCCAAGAGCTTAGGTGTTTCCAAACTGTTACTTGCTATCAGGCT 489
Query 523 GTGGTGAA-CAATTTGGAGGATGCTCATGAACAGATCGACAAGGCGATAGCAACAGCTTT 581
|||||||| | |||||||||||||||||||||| ||||||| ||||||| |||||||| |
Sbjct 490 GTGGTGAATC-ATTTGGAGGATGCTCATGAACAAATCGACATGGCGATATCAACAGCTCT 548
Query 582 GAAAGAGAGCAAGCCTGTGTACATTAGCATCAGTTGCAACTTAGCTGCAACTCCTCATCC 641
|||||| ||||||||||||||||||||| |||| || |||||||||||||||||||||||
Sbjct 549 GAAAGAAAGCAAGCCTGTGTACATTAGCGTCAGCTGTAACTTAGCTGCAACTCCTCATCC 608
Query 642 TACGTTTGCTCGTGATCCTGTCCCTTTTGACCTAACTCCTAGGATGAGCAACACG-ATGG 700
||| ||||||||| ||||||||||||||||||||||||| ||| ||||||||| | ||
Sbjct 609 TACATTTGCTCGTTATCCTGTCCCTTTTGACCTAACTCCAAGGTTGAGCAACAAGAAT-T 667
Query 701 GTTTAGAAGCTGCGGTGGAAGCAACATTGGAGTTTCTGAACAAGGCAGTGAAGCCAGTTA 760
||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |
Sbjct 668 GTTTAGAAGCTGCGGTGGAAGCAACATTGGAGTTTCTAAACAAGGCGGTGAAGCCCGTCA 727
Query 761 TGGTTGGTGG-CCCAAAGTTGCGTGTGGCTAAAGCAAGTGAGGCCTTTTTGGAGCTAGCT 819
|||| ||||| ||| |||||||||||||||||||| || || |||||| |||||||||||
Sbjct 728 TGGTCGGTGGTCCC-AAGTTGCGTGTGGCTAAAGCTAGGGATGCCTTTGTGGAGCTAGCT 786
Query 820 GATGCTTCAGGCTA-CCCTCTCGCAGTGATGCCTTCTACAAAAGGCCTTGTACCAGAGAA 878
|||||||||||||| ||| || ||||||||||| ||| |||||||| ||||||||||| |
Sbjct 787 GATGCTTCAGGCTATCCC-CTGGCAGTGATGCCATCTGCAAAAGGCTTTGTACCAGAGGA 845
Query 879 CCATCCTCATTTCATTGGCACTTACTGGGGAGCAGTAAGCACACC-TTTCTGCTCTGAGA 937
||||||||| |||||||| ||||||||||||||||| ||||| || ||||||| |||||
Sbjct 846 CCATCCTCACTTCATTGGTACTTACTGGGGAGCAGTGAGCAC-CCTTTTCTGCAATGAGA 904
Query 938 TTGTCGAATCTGCGGATGCTTACATCTTCGCAGGTCCAATCTTCAACGACTACAGCTCCG 997
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 905 TTGTCGAATCTGCGGATGCTTACATTTTCGCAGGTCCAATATTCAACGACTACAGCTCCG 964
Query 998 TAGGTTACTCTCTTCTCCTCAAGAAAGAAAAAGCAATAATTGTGCATCCTGATCGAGTCG 1057
| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||||
Sbjct 965 TGGGTTACTCACTTCTCCTCAAGAAAGAAAAAGCCATCATTGTGCATCCTGACCGCGTCG 1024
Query 1058 TTGTGGCTAATGGTCCAACGTTTGGTTGCGTTCTGATGAGCGATTTCTTCAGGGAGTTGG 1117
|||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1025 TTGTGGCTAATGGTCCTACGTTTGGTTGCGTTCGGATGAGCGAATTCTTCAGGGAGTTGG 1084
Query 1118 CTAAGAGGGTTAAGCGTAACGAGACAGCTTATGAGAACTATGAGAGGATCTTTGTACCTG 1177
|||||||||| || ||||||| ||| |||||||||||||| | ||||||||||| ||||
Sbjct 1085 CTAAGAGGGTGAAACGTAACGTGACGGCTTATGAGAACTACCATAGGATCTTTGTCCCTG 1144
Query 1178 AAGGTAAGCCATTGAAATGCAAA-CCAGGAGAGCCAT-TGAGGGTCAACGCAATGTTCCA 1235
||||||||||||||||||||||| | | ||||| | | |||| ||||||||||||||||
Sbjct 1145 AAGGTAAGCCATTGAAATGCAAATCTA-GAGAGGC-TCTGAGAATCAACGCAATGTTCCA 1202
Query 1236 ACACATTCAGAAGATGCTCTCTAGTGAAACCGCTGTGATTGCTGAAACTGGTGATTCTTG 1295
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1203 ACACATTCAGAAGATGCTCTCTAGTGAAACTGCTGTGATTGCTGAAACTGGTGATTCTTG 1262
Query 1296 GTTCAATTGTCAGAAGCTAAAGCTGCCTAAAGGATGTGGGTACGAGTTTCAGATGCAGTA 1355
||||||||| ||||| || | |||||||||||||||||||||||||||||| ||||||||
Sbjct 1263 GTTCAATTGCCAGAAACTTAGGCTGCCTAAAGGATGTGGGTACGAGTTTCAAATGCAGTA 1322
Query 1356 TGGATCCATTGGTTGGTCTGTTGGTGCGACTCTAGGATACGCCCAAGCAACCCCGGAGAA 1415
|||||| ||||||||||||||||||||||||||||||||||| |||||| | || | ||
Sbjct 1323 TGGATCAATTGGTTGGTCTGTTGGTGCGACTCTAGGATACGCACAAGCATCACCAAATAA 1382
Query 1416 GA-GAGTGTTGTCTTTCATTGGAGATGGGAGTTTCCAAGTGACTGCTCAGGACATATCCA 1474
| |||||||||||||||| ||||| ||||||||||||||||| ||||||||| ||||||
Sbjct 1383 -ACGAGTGTTGTCTTTCATCGGAGACGGGAGTTTCCAAGTGACGGCTCAGGACGTATCCA 1441
Query 1475 CGATGATTCGTAACGGACAGAAGGCGATCATCTTCTTGATCAACAACGGTGGCTACACCA 1534
||||||||||||||||||||||| | ||||||||| |||| |||||||||||||||||||
Sbjct 1442 CGATGATTCGTAACGGACAGAAGACTATCATCTTCCTGATTAACAACGGTGGCTACACCA 1501
Query 1535 TTGAAGTTGAGATTCATGATGGTCCTTACAATGTTATCAAGAACTGGAACTACACTGGTC 1594
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1502 TTGAAGTTGAGATTCATGATGGTCCTTACAATGTGATCAAGAACTGGAACTACACTGGTC 1561
Query 1595 TTGTCGATGCTATTCATAACGGTGAAGGAAAATGCTGGACCACAAAGGTGAGATACGAGG 1654
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1562 TTGTCGATGCCATTCATAACGGTGAAGGCAAATGCTGGACCACAAAGGTGAGATACGAGG 1621
Query 1655 AGGAGTTAGTGGAAGCGATTAAGACTGCGACAACGGAGAAGAAAGATAGTCTTTGTTTCA 1714
|||||||||||||||||||||| || || ||| |||||||||||||||||||||||||||
Sbjct 1622 AGGAGTTAGTGGAAGCGATTAACACAGCTACATCGGAGAAGAAAGATAGTCTTTGTTTCA 1681
Query 1715 TTGAAGTGATTGTTCACAAAGATGATACAAGCAAAGAGTTGCTTGAGTGGGGATCTCGCG 1774
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1682 TTGAAGTGATTGTTCACAAAGATGATACGAGCAAAGAGTTGCTTGAGTGGGGCTCTCGCA 1741
Query 1775 TCTCAGCTGCTAATGGTCGTCCTCCCAATCCTCAGTAG 1812
||||||||||||||||||||||||||||||||||||||
Sbjct 1742 TCTCAGCTGCTAATGGTCGTCCTCCCAATCCTCAGTAG 1779
> Ahg491381 jgi|Araly1|491381|fgenesh2_kg.7__814__AT4G33070.1
Length=2059
Score = 2012 bits (1089), Expect = 0.0
Identities = 1600/1845 (87%), Gaps = 41/1845 (2%)
Strand=Plus/Plus
Query 1 ATGGACACCAAAATTGGAGCCATCGA-CACGTGTAAGCCAAC-AACTGGTGACATCGGAA 58
|||||||||||||| ||| | ||||| | || ||||| || || ||| ||| |||| |
Sbjct 44 ATGGACACCAAAATCGGATCGATCGATTA-TTGCAAGCCGACGAA-TGGCGACGTCGGTA 101
Query 59 GTCCACCAAGCAACGCCGTCGCAACAAT-C-CAAGAC---TCC--GCTCC-C-ATCACC- 108
||||||||| | ||||||| ||||||| | ||| | ||| |||| | ||||||
Sbjct 102 GTCCACCAAACGGCGCCGTCTCAACAATCCACAACTCTGTTCCTTCCTCCGCTATCACCG 161
Query 109 ACAAC-C-TCCGAATCGACTCTAGGACGTCACTTATCCCGCCGTCTTGTCCAAGCCGGAG 166
|||| | | ||| |||||| | || ||| || || | |||||||| ||||||||||| |
Sbjct 162 TCAACTCATGCGATTCGACTATCGGTCGTTACATAGCTCGCCGTCTCGTCCAAGCCGGCG 221
Query 167 TCACCGATGTTTTCTCTGTTCCCGGTGATTTCAACCTAACTCTT-CTCGACCACCTCATC 225
| |||||| | |||||||||||||| ||||||||||| ||| || || || ||||||||
Sbjct 222 TGACCGATATCTTCTCTGTTCCCGGCGATTTCAACCTCACT-TTGCTTGATCACCTCATG 280
Query 226 GCCGAGCCAGAGCTCAA-CAACATCGGATGCTGTAACGAGCTTAACGCCGGTTACGCCGC 284
|| ||||| ||||| || | ||||| || |||||||||||||||||||||||||| ||
Sbjct 281 GCTGAGCCGGAGCTGAATC-TGATCGGCTGTTGTAACGAGCTTAACGCCGGTTACGCTGC 339
Query 285 CGATGGATACGCTCGATCTCGTGGAGTCGGTGCTTGCGTCGTGACTTTCACCGTTGGTGG 344
||| || |||||| |||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 340 CGACGGTTACGCTAGATCTCGTGGAGTCGGCGCTTGCGTTGTGACCTTCACCGTTGGTGG 399
Query 345 ACTCAGCGTTTTGAACGCTATCGCTGGTGCGTACAGTGAGAACCTACCAG-TTATATGTA 403
|||||||||||||||||| ||||||||||| ||||| ||||| || || | |||| ||||
Sbjct 400 ACTCAGCGTTTTGAACGCGATCGCTGGTGCTTACAGCGAGAATCTTCC-GCTTATCTGTA 458
Query 404 TCGTTGGAGGTCCTAACTCCAACGATTTTGGCACTAACCGGATTCTTCATCACACCATCG 463
|||| |||||||||||||| ||||||| |||||| |||||||||||||||||||||||||
Sbjct 459 TCGTCGGAGGTCCTAACTCTAACGATTATGGCACCAACCGGATTCTTCATCACACCATCG 518
Query 464 GTTTACCTGACTTTAGCCAAGAGCTTAGGTGTTTCCAAACTGTTACTTGCTACCAGGCTG 523
| |||||||| |||||||||||||||||||| |||||||| || ||||| || ||||| |
Sbjct 519 GATTACCTGATTTTAGCCAAGAGCTTAGGTGCTTCCAAACGGTGACTTGTTATCAGGCGG 578
Query 524 TGGTGAACAATTTGGAGGATGCTCATGAACAGATCGACA-AGGCGATAGCAACAGCTTTG 582
|||||||||||||||||||||||||||||||||| || | | |||||| |||||||||||
Sbjct 579 TGGTGAACAATTTGGAGGATGCTCATGAACAGATTGATATA-GCGATATCAACAGCTTTG 637
Query 583 AAAGAGAGCAAGCCTGTGTACATTAGCATCAGTTGCAACTTAGCTGCAACTCCTCATCCT 642
|||||||||||||||||||| || ||||| || || |||||||| || | |||||||| |
Sbjct 638 AAAGAGAGCAAGCCTGTGTATATAAGCATAAGCTGTAACTTAGCAGCGATTCCTCATCAT 697
Query 643 ACGTTT-GCTCGTGATCCTGTCCCTTTTGAC-CTAACTCCTAGGA-TGAGCAACACGATG 699
|| ||| || |||| ||| ||||||||| | ||| | |||| || ||||||||| ||||
Sbjct 698 ACATTTAGC-CGTGCTCCAGTCCCTTTT-TCTCTAGCGCCTA-GATTGAGCAACAAGATG 754
Query 700 GGTTTAGAAGCTGCGGTGGAAGCAACATTGGAGTTTCTGAACAAGGCAGTGAAGCCAGTT 759
||| |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 755 GGTCTAGAAGCTGCGGTGGAAGCAACTTTGGAGTTTCTGAATAAGGCTGTGAAGCCAGTT 814
Query 760 ATGGTTGGTGGCCCAAAGTTGCGTGTGGCTAAAGCAAGTGAGGC-CTTT-TTGGAGCTAG 817
||||||||||| || |||||||||||||||||||| |||| | |||| || |||||||
Sbjct 815 ATGGTTGGTGGTCCTAAGTTGCGTGTGGCTAAAGCTTGTGA-TCTCTTTGTT-GAGCTAG 872
Query 818 CTGATGCTTCAGGCTACCCTCTCG-CAGTGATGCCTTCTACAAAAGGCCTTGTACCAGAG 876
|||||||||| ||||| || | | | |||||||||| | ||||||||||||||||||
Sbjct 873 CTGATGCTTCTGGCTATGCT-AAGCCGGCGATGCCTTCTGCGAAAGGCCTTGTACCAGAG 931
Query 877 AACCATCCTCATTTCATTGGCACTTACTGGGGAGCAGTAAGCACACCTTTCTGCTCTGAG 936
||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||
Sbjct 932 CACCATCCTCATTTCATTGGCACTTATTGGGGAGCAGTGAGCACTCCTTTTTGCTCTGAG 991
Query 937 ATTGTCGAATCTGCGGATGCTTACATCTTCGCAGGTCCAATCTTCAACGACTACAGCTCC 996
||||| |||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 992 ATTGTGGAATCTGCGGATGCTTACATTTTTGCAGGTCCAATCTTCAACGACTATAGCTCT 1051
Query 997 GTAGGTTACTCTCTTCTCCTCAAGAAAGAAAAAGCAATAATTGTGCATCCTGATCGAGTC 1056
|| |||||||| ||||||||||||||||||||||| || | |||||||||||||| |||
Sbjct 1052 GTGGGTTACTCGCTTCTCCTCAAGAAAGAAAAAGCCATCGTCGTGCATCCTGATCGTGTC 1111
Query 1057 GTTGTGGCTAATGGTCCAACGTTTGGTTGCGTTCTGATGAGCGATTTCTTCAGGGAGTTG 1116
|||||||||||||||||||||||| || |||| ||||||||||||||||||||| |||
Sbjct 1112 ACTGTGGCTAATGGTCCAACGTTTGGATGGGTTCAGATGAGCGATTTCTTCAGGGAATTG 1171
Query 1117 GCTAAGAGGGTTAAGCGTAACGAGACAGCTTATGAGAACTATGAGAGGATCTTTGTACCT 1176
||||||||||| |||||||| ||||| |||||||||||||| | ||||||||||| |||
Sbjct 1172 GCTAAGAGGGTGAAGCGTAATGAGACTGCTTATGAGAACTACCATAGGATCTTTGTTCCT 1231
Query 1177 GAAGGTAAGCCATTGAAATGCAAACCAGGAGAGCCATTGAGGGTCAACGCAATGTTCCAA 1236
||||||||||||||||| ||| || || ||||||||| || || || |||||||||||
Sbjct 1232 GAAGGTAAGCCATTGAAGTGCGAATCAAAAGAGCCATTAAGAGTTAATACAATGTTCCAA 1291
Query 1237 CACATTCAGAAGATGCTCTCTAGTGAAACCGCTGTGATTGCTGAAACTGGTGATTCTTGG 1296
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1292 CACATTCAGAAGATGCTCTCTAGTGAAACCGCTGTGATTGCTGAAACCGGTGATTCTTGG 1351
Query 1297 TTCAATTGTCAGAAGCTAAAGCTGCCTAA-AGGATGTGGGTACGAGTTTCAGATGCAGTA 1355
|||||||| ||||| |||||| |||| || ||| ||||| ||||||||||||||||||||
Sbjct 1352 TTCAATTGCCAGAAACTAAAGTTGCC-AAGAGGCTGTGGATACGAGTTTCAGATGCAGTA 1410
Query 1356 TGGATCCATTGGTTGGTCTGTTGGTGCGACTCTAGGATACGCCCAAGCAACCCCGGAGAA 1415
|||||| ||||| |||||||||||||| |||||||||||||| || ||| | || |||||
Sbjct 1411 TGGATCGATTGGGTGGTCTGTTGGTGCAACTCTAGGATACGCACAGGCATCACCAGAGAA 1470
Query 1416 GAGAGTGTTGTCTTTCATTGGAGATGGGAGTTTCCAAGTGACTGCTCAGGACATATCCAC 1475
| |||||||| | ||||| || || ||||||||||||||||| |||||||||||||| ||
Sbjct 1471 GCGAGTGTTGGCATTCATCGGTGACGGGAGTTTCCAAGTGACGGCTCAGGACATATCAAC 1530
Query 1476 GATGATTCGTAA-CGGACAGAAGGCGATCATCTTCTTGATCAACAACGGTGGCTACACCA 1534
||| | ||||| || ||||||| |||||||||||||||| ||||| |||||||||||||
Sbjct 1531 AATGCTGCGTAATCG-ACAGAAGACGATCATCTTCTTGATTAACAATGGTGGCTACACCA 1589
Query 1535 TTGAAGTTGAGATTCATGATGGTCCTTACAATGTTATCAAGAACTGGAACTACACTGGTC 1594
||||||| |||||||||||||||||||| || || || ||||||||||||||||||||||
Sbjct 1590 TTGAAGTAGAGATTCATGATGGTCCTTATAACGTGATTAAGAACTGGAACTACACTGGTC 1649
Query 1595 TTGTCGATGCTATTCATAACGGTGAAGGAAAATGCTGGACCACAAAGGTGAGATACGAGG 1654
| || || || ||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 1650 TCGTTGACGCCATTCATAACGGTGAAGGCAATTGCTGGACTACAAAGGTGAGATACGAGG 1709
Query 1655 AGGAGTTAGTGGAAGCGATTAAGACTGCGACAACGGAGAAGAAAGATAGTCTTTGTTTCA 1714
||||||||||||| ||||| ||||| || |||| ||||||||||||| |||| |||||||
Sbjct 1710 AGGAGTTAGTGGAGGCGATCAAGACAGCAACAATGGAGAAGAAAGATTGTCTATGTTTCA 1769
Query 1715 TTGAAGTGATTGTTCACAAAGATGATACAAGCAAAGAGTTGCTTGAGTGGGGATCTCGCG 1774
| ||||||||| |||| || |||||||| ||||||||||||||||||||||| || ||||
Sbjct 1770 TAGAAGTGATTCTTCATAAGGATGATACGAGCAAAGAGTTGCTTGAGTGGGGCTCACGCG 1829
Query 1775 TCTCAGCTGCTAATGGTCGTCCTCCCAATCCTCAGTAGAAGCAAG 1819
| || ||||||||| | |||||||||||||||||||||||| |||
Sbjct 1830 TATCTGCTGCTAATAGCCGTCCTCCCAATCCTCAGTAGAAG-AAG 1873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74961602160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5