BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01340.1
Length=1274
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349470 jgi|Araly1|349470|fgenesh1_pg.C_scaffold_6000063 1471 0.0
> Ahg349470 jgi|Araly1|349470|fgenesh1_pg.C_scaffold_6000063
Length=936
Score = 1471 bits (796), Expect = 0.0
Identities = 886/930 (95%), Gaps = 4/930 (0%)
Strand=Plus/Plus
Query 162 GGCGACG-AGAACGGAATCGAAGAAGCAGATTCCGCCGTACATGAAAGCAGTCTCAGGCT 220
|||| || || || ||||||| ||| |||||||||||||||||||||||||||||||| |
Sbjct 9 GGCGGCGAAG-ACTGAATCGAGGAACCAGATTCCGCCGTACATGAAAGCAGTCTCAGGTT 67
Query 221 CACTAGGCGGAGTGGTCGAGGCTTGTTGTCTCCAACCAATCGACGTAATCAAAACGCGTC 280
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 CACTAGGCGGAGTCGTCGAGGCTTGTTGTCTCCAACCAATCGACGTAATCAAAACGCGTC 127
Query 281 TCCAGCTAGATCGCGTCGGCGCTTACAAAGGAATCGCTCACTGTGGTTCGAA-GGTGGTT 339
||||||||||||||||||| || |||||||||||||| ||||||||||| || |||||||
Sbjct 128 TCCAGCTAGATCGCGTCGGAGCGTACAAAGGAATCGCGCACTGTGGTTC-AACGGTGGTT 186
Query 340 CGCACCGAAGGAGTTCGTGCTCTCTGGAAAGGCTTAACACCGTTCGCTACTCATCTCACG 399
||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 187 CGCACCGAAGGAGTTCGTGCTCTTTGGAAAGGTTTAACGCCGTTCGCTACTCATCTCACG 246
Query 400 CTTAAGTACACGCTTCGGATGGGATCCAACGCCATGTTTCAAACCGCCTTTAAGGATTCC 459
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 247 CTTAAGTACACGCTTCGGATGGGATCCAACGCCATGTTTCAAACCGCGTTTAAGGATTCA 306
Query 460 GAGACCGGAAAGGTCAGCAATCGTGGCCGTTTTCTTTCCGGATTCGGTGCCGGTGTTCTT 519
||||||||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||||
Sbjct 307 GAGACCGGAAAAGTCAGTAATCGGGGCCGTTTGCTTTCCGGATTCGGCGCCGGCGTTCTT 366
Query 520 GAAGCTCTCGCCATTGTTACACCCTTTGAGGTGGTGAAAATTAGACTTCAGCAGCAGAAA 579
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 367 GAAGCTCTCGCCATTGTTACACCCTTTGAGGTGGTGAAAATTAGACTTCAGCAACAGAAA 426
Query 580 GGATTGAGTCCTGAGCTTTTCAAGTACAAAGGACCAATACATTGTGCTAGAACCATCGTG 639
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GGATTAAGTCCTGAGCTTTTCAAGTACAAAGGACCAATACATTGTGCTAGAACCATCGTG 486
Query 640 AGAGAAGAAAGCATACTTGGTTTATGGTCAGGTGCAGCACCGACGGTTATGCGAAACGGA 699
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 487 AGAGAAGAAAGCATACTTGGGTTATGGTCAGGTGCAGCACCAACGGTTATGCGAAACGGC 546
Query 700 ACCAACCAAGCTGTAATGTTCACAGCGAAAAACGCGTTTGACATACTCTTGTGGAACAAA 759
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 547 ACCAACCAAGCTGTAATGTTCACAGCGAAAAACGCATTTGACATACTTTTGTGGAACAAA 606
Query 760 CACGAAGGTGACGGTAAAATCTTGCAGCCATGGCAGTCAATGATCTCAGGGTTTTTAGCT 819
|| ||||| || |||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 607 CATGAAGGCGATGGTAAAGTCTTGCAGCCATGGCAGTCCATGATCTCAGGGTTTTTAGCT 666
Query 820 GGAACCGCAGGTCCGTTCTGCACAGGACCGTTTGATGTGGTGAAAACGAGGTTGATGGCT 879
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 667 GGAACCGCAGGTCCGTTCTGCACGGGACCATTTGATGTGGTGAAAACGAGGTTGATGGCT 726
Query 880 CAGAGCAGAGACAGTGAAGGTGGGATTAGATATAAAGGGATGGTTCATGCCATTAGAACG 939
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 CAGAGCAGAGACAGTGAAGGTGGGATTAGATATAAAGGGATGGTTCATGCCATTAGAACA 786
Query 940 ATTTATGCAGAGGAAGGATTAGTGGCCTTATGGAGAGGGTTATTGCCGAGGCTAATGAGG 999
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 787 ATTTATGCAGAGGAAGGATTAGTGGCTTTATGGAGAGGGTTATTGCCGAGGCTAATGAGG 846
Query 1000 ATTCCTCCAGGACAAGCCATTATGTGGGCTGTTGCTGATCAAGTCACTGGTCTTTATGAG 1059
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 ATCCCACCAGGACAAGCCATTATGTGGGCTGTTGCTGATCAAGTCACTGGTCTTTATGAA 906
Query 1060 ATGAGATATCTTCGGAATGCTCCTTTATAG 1089
||||||||||||||||||||| ||||||||
Sbjct 907 ATGAGATATCTTCGGAATGCTACTTTATAG 936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47615523333
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5