BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G01350.1

Length=547
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg892077 jgi|Araly1|892077|Al_scaffold_0006_73                      361    4e-99
  Ahg939534 jgi|Araly1|939534|scaffold_600078.1                        195    4e-49


> Ahg892077 jgi|Araly1|892077|Al_scaffold_0006_73
Length=219

 Score =  361 bits (195),  Expect = 4e-99
 Identities = 211/219 (96%), Gaps = 0/219 (0%)
 Strand=Plus/Plus

Query  100  ATGGCGGGAGGAGGAAACTTTATTGCGAGAGTGATCTCATACGTTGCGAACGAGTTCATA  159
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    ATGGCGGGAGGAGGAAACTTTATTGCGAGAGTGATCTCATACGTTGCAAACGAGTTCATA  60

Query  160  GTTAATGGTTTGGCAAACAGCCATGCTTTCCAGAGATTTGCTGTGAGGACTTCAAAGAGA  219
            ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  61   GTTAACGGTTTGGCAAACAGTCATGCTTTCCAGAGATTTGCTGTGAGGACTTCTAAGAGA  120

Query  220  ATAGAAAACCTCTCTAAAATGGCTGCAGAGAACAGGGAGAAAGTCGCTCAGCAAATGGAA  279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  121  ATAGAAAACCTCTCTAAAATGGCTGCAGAGAACAGGGAGAAAGTCGCTCAGCATATGGAA  180

Query  280  GAATTTGCCAAGAACATTGACTCCACGAAGAAACCCTGA  318
            |||||| |||||||||||||||| | |||||||||||||
Sbjct  181  GAATTTTCCAAGAACATTGACTCGATGAAGAAACCCTGA  219


> Ahg939534 jgi|Araly1|939534|scaffold_600078.1
Length=205

 Score =  195 bits (105),  Expect = 4e-49
 Identities = 119/125 (95%), Gaps = 3/125 (2%)
 Strand=Plus/Minus

Query  385  TTATCTTTGTATAAAGAATGTTAAAAAGTAATAAGCTTGTGGATTAAACAACCAGTGATC  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  205  TTATCTTTGTATAAAGAATGTTAAAAAGTAATAAGCTTGTGGATTAAACAACCAGTGATC  146

Query  445  TTTTGGTGCTGTTTCTCTTCTCTTAAACCCAACTCTTCCGGAGTGACTAACCACT--GTA  502
            ||||||||||||||||||||| ||||||| |||||| ||||||||||||||| ||  |||
Sbjct  145  TTTTGGTGCTGTTTCTCTTCTTTTAAACCAAACTCTACCGGAGTGACTAACC-CTTTGTA  87

Query  503  TGAAG  507
            |||||
Sbjct  86   TGAAG  82



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19955373047


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5