BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G01360.1 Length=1482 Score E Sequences producing significant alignments: (Bits) Value Ahg939532 jgi|Araly1|939532|scaffold_600076.1 2012 0.0 > Ahg939532 jgi|Araly1|939532|scaffold_600076.1 Length=1345 Score = 2012 bits (1089), Expect = 0.0 Identities = 1261/1345 (94%), Gaps = 8/1345 (1%) Strand=Plus/Plus Query 32 AAATTACCAG-ATTTGCCACTATGAGCTTCTTGATTCCTAATAGAGGAGTAGGAGGAACC 90 |||||||| | ||||||||||||||||||||| |||||||| ||||||| |||||||||| Sbjct 1 AAATTACC-GCATTTGCCACTATGAGCTTCTTAATTCCTAACAGAGGAGCAGGAGGAACC 59 Query 91 AAGATTCCTCTCTCCATCATCGTTCTCGTTCTTTGTGGTTTCATGTTCTTCATTCTCTTA 150 ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 60 AAGATTCCTCTTTCCATCATTGTTCTCGTTCTTTGTGGTTTCATGTTCTTCATTCTCTTT 119 Query 151 TACACTGAAAGAATCAGCTTGTTGtcttcttcttcctcttcgtcttcatctttcttcAAG 210 ||||| ||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| Sbjct 120 TACACCGAAAGAATCAGCTTGATGTCTTCTTCTTCCTCTTCGTCTTCATATTTTTTCAAG 179 Query 211 CTAAAGTCTTGTCCGAGGAAAGATGTTAGCTCGAAACCTAAGGAGAAAATTCGAAAGGAA 270 || |||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 180 CTTAAGTCTTGTCCGAGGAAAGACAACAGCTCGAAACCTAAGGAGAAAATTCAAAAGGAG 239 Query 271 AGATCAGAGATATTGGAAGTGCTTGACGACAGGTTCGAATTCGATCCCGAAGAGTGTAAC 330 |||||||| || || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 240 AGATCAGAAATTTTAGAAGTGCTTGACGACAGGTTCGAATTCGATCCAGAAGAGTGTAAT 299 Query 331 GTTGCAGCAGGGAAATGGGTTTACAATAGCTCAATTGAACCACTCTACACCGATAGATCA 390 |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 300 GTTGCAGCTGGGAAATGGGTTTATAATAGCTCAATCGAACCACTCTACACCGATAGATCA 359 Query 391 TGTCCATACATCGATCGTCAATTCTCTTGTATGAAAAACGGACAGCCAGAAACTGATTAT 450 ||||| ||||| || |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 360 TGTCCGTACATTGACCGTCAATTCTCTTGTATGAAAAACGGGCAGCCAGAAACTGATTAC 419 Query 451 CTTCGGTGGGAATGGCAGCCTGATGACTGTACAATTCCACGATTTAGTCCGAAGTTAGCA 510 ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 CTTCGATGGGAGTGGCAGCCTGATGACTGTACAATTCCACGATTTAGTCCGAAGTTAGCT 479 Query 511 ATGAACAAACTCAGAGGAAAAAGACTACTTTTTGTGGGAGATTCGTTGCAACGAAGCCAA 570 |||||||| ||||||||||||||||| || ||||| |||||||| ||||||||||||||| Sbjct 480 ATGAACAAGCTCAGAGGAAAAAGACTGCTATTTGTCGGAGATTCTTTGCAACGAAGCCAA 539 Query 571 TGGGAATCGTTCGTGTGTTTGGTGGAATCAATAATACCCGAAG-GAGAAAAATCAATGAA 629 |||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 540 TGGGAATCATTCGTGTGTTTGGTGGAATCAATAATACCCGAAGCG-GAAAAATCAATGAA 598 Query 630 GCGTAGCCAAAAATACTTTGTATTTAAAGCAAAGGAATACAATGCGACTATAGAGTTCTA 689 |||||||| |||| ||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 599 GCGTAGCCGAAAACACTTTGTCTTTAAAGCAAAGGAATACAATGCGACTATAGAATTCTA 658 Query 690 TTGGGCACCGTATATCGTCGAATCAAACACAGATATACCTGTGATTTCGGATCCAAAGAA 749 ||||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||| Sbjct 659 TTGGGCACCGTATATCGTCGAGTCAAACACAGATATACCTGTGATATCAGATCCGAAGAA 718 Query 750 ACGGATAGTGAAAGTGGACTCAGTGAAAGATCGAGCTAAGTTTTGGGAAGGAGCTGATAT 809 | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 719 AAGGATAGTGAAAGTGGACTCAGTGAAAGATCGAGCTAAGTTTTGGGAAGGAGCGGATAT 778 Query 810 TTTGGTTTTCAACACTTATGTTTGGTGGATGAGTGGTCTCCGCATGAAAGCTCTGTGGGG 869 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 779 TTTGGTTTTCAACACTTATGTTTGGTGGATGAGTGGTCTCCGAATGAAAGCTCTGTGGGG 838 Query 870 TTC-TTTCGGAAATGGAGAGAGTGGTGCAGAGGCACTAGACACACAAGTGGCTTACAGGC 928 ||| ||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||| Sbjct 839 TTCGTTT-GGAAATGGAGAGAGTGGTGCGGAGGCGTTAGACACACCAGTGGCTTACAGGC 897 Query 929 TAGGACTCAAGACATGGGCTAATTGGGTAGACTCCACCGTTGACCCTAATAAGACCAGAG 988 |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| Sbjct 898 TAGGGCTCAAGACATGGGCTAATTGGGTTGACTCTACCGTTGACCCTAATAAGACGAGAG 957 Query 989 TCTTCTTCACCACCATGTCTCCTACTCATACTAGAAGTGCGGATTGGGGAAAGCCAAACG 1048 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 958 TCTTCTTCACCACCATGTCTCCTACTCATACTAGAAGTGCGGATTGGGGAAAGCCAAATG 1017 Query 1049 GCACGAAGTGTTTCAACGAGACGAAACCGATAAAAGATAAGAAGTTTTGGGGAACAGGCT 1108 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 1018 GCACGAAGTGTTTCAACGAGACGAAACCCATAAAAGATAAGAAGTTTTGGGGAACTGGCT 1077 Query 1109 CTAACAAGCAGATGATGAAAGTAGTGTCAAGCGTGAT-AAAGCACATGACTACGCATGTG 1167 |||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||| ||| Sbjct 1078 CTAACAAGCAGATGATGAAAGTCGTGTCAAGCGTCATCAAA-CACATGACCACGCACGTG 1136 Query 1168 ACAGTCATCAACATCACGCAGCTCTCTGAGTATCGCATCGACGCTCACACATCAGTTTAC 1227 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1137 ACTGTCATCAACATCACGCAGCTCTCTGAGTATCGCATAGACGCTCACACATCAGTTTAC 1196 Query 1228 ACCGAGACAGGTGGCAAGATCCTAACCGCTGAGCAGAGGGCTGATCCAATGCATCACGCT 1287 ||||||||||||||||||||| |||| |||||| ||||||||||||| |||||||||||| Sbjct 1197 ACCGAGACAGGTGGCAAGATCTTAACGGCTGAGGAGAGGGCTGATCCTATGCATCACGCT 1256 Query 1288 GATTGTATACATTGGTGTTTACCTGGACTACCCGATACATGGAATCGGATCCTATTGGCT 1347 |||||||||||||||||| |||||||| | |||||||||||||| |||||| |||||||| Sbjct 1257 GATTGTATACATTGGTGTCTACCTGGATTGCCCGATACATGGAACCGGATCTTATTGGCT 1316 Query 1348 CATTTGTAAATCAAGCTAGGAGGAA 1372 ||||||||||||||||||||||||| Sbjct 1317 CATTTGTAAATCAAGCTAGGAGGAA 1341 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55459396720 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5