BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01360.1
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939532 jgi|Araly1|939532|scaffold_600076.1 2012 0.0
> Ahg939532 jgi|Araly1|939532|scaffold_600076.1
Length=1345
Score = 2012 bits (1089), Expect = 0.0
Identities = 1261/1345 (94%), Gaps = 8/1345 (1%)
Strand=Plus/Plus
Query 32 AAATTACCAG-ATTTGCCACTATGAGCTTCTTGATTCCTAATAGAGGAGTAGGAGGAACC 90
|||||||| | ||||||||||||||||||||| |||||||| ||||||| ||||||||||
Sbjct 1 AAATTACC-GCATTTGCCACTATGAGCTTCTTAATTCCTAACAGAGGAGCAGGAGGAACC 59
Query 91 AAGATTCCTCTCTCCATCATCGTTCTCGTTCTTTGTGGTTTCATGTTCTTCATTCTCTTA 150
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 60 AAGATTCCTCTTTCCATCATTGTTCTCGTTCTTTGTGGTTTCATGTTCTTCATTCTCTTT 119
Query 151 TACACTGAAAGAATCAGCTTGTTGtcttcttcttcctcttcgtcttcatctttcttcAAG 210
||||| ||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||
Sbjct 120 TACACCGAAAGAATCAGCTTGATGTCTTCTTCTTCCTCTTCGTCTTCATATTTTTTCAAG 179
Query 211 CTAAAGTCTTGTCCGAGGAAAGATGTTAGCTCGAAACCTAAGGAGAAAATTCGAAAGGAA 270
|| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 180 CTTAAGTCTTGTCCGAGGAAAGACAACAGCTCGAAACCTAAGGAGAAAATTCAAAAGGAG 239
Query 271 AGATCAGAGATATTGGAAGTGCTTGACGACAGGTTCGAATTCGATCCCGAAGAGTGTAAC 330
|||||||| || || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 AGATCAGAAATTTTAGAAGTGCTTGACGACAGGTTCGAATTCGATCCAGAAGAGTGTAAT 299
Query 331 GTTGCAGCAGGGAAATGGGTTTACAATAGCTCAATTGAACCACTCTACACCGATAGATCA 390
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 300 GTTGCAGCTGGGAAATGGGTTTATAATAGCTCAATCGAACCACTCTACACCGATAGATCA 359
Query 391 TGTCCATACATCGATCGTCAATTCTCTTGTATGAAAAACGGACAGCCAGAAACTGATTAT 450
||||| ||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 TGTCCGTACATTGACCGTCAATTCTCTTGTATGAAAAACGGGCAGCCAGAAACTGATTAC 419
Query 451 CTTCGGTGGGAATGGCAGCCTGATGACTGTACAATTCCACGATTTAGTCCGAAGTTAGCA 510
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTTCGATGGGAGTGGCAGCCTGATGACTGTACAATTCCACGATTTAGTCCGAAGTTAGCT 479
Query 511 ATGAACAAACTCAGAGGAAAAAGACTACTTTTTGTGGGAGATTCGTTGCAACGAAGCCAA 570
|||||||| ||||||||||||||||| || ||||| |||||||| |||||||||||||||
Sbjct 480 ATGAACAAGCTCAGAGGAAAAAGACTGCTATTTGTCGGAGATTCTTTGCAACGAAGCCAA 539
Query 571 TGGGAATCGTTCGTGTGTTTGGTGGAATCAATAATACCCGAAG-GAGAAAAATCAATGAA 629
|||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 540 TGGGAATCATTCGTGTGTTTGGTGGAATCAATAATACCCGAAGCG-GAAAAATCAATGAA 598
Query 630 GCGTAGCCAAAAATACTTTGTATTTAAAGCAAAGGAATACAATGCGACTATAGAGTTCTA 689
|||||||| |||| ||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 599 GCGTAGCCGAAAACACTTTGTCTTTAAAGCAAAGGAATACAATGCGACTATAGAATTCTA 658
Query 690 TTGGGCACCGTATATCGTCGAATCAAACACAGATATACCTGTGATTTCGGATCCAAAGAA 749
||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||
Sbjct 659 TTGGGCACCGTATATCGTCGAGTCAAACACAGATATACCTGTGATATCAGATCCGAAGAA 718
Query 750 ACGGATAGTGAAAGTGGACTCAGTGAAAGATCGAGCTAAGTTTTGGGAAGGAGCTGATAT 809
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 719 AAGGATAGTGAAAGTGGACTCAGTGAAAGATCGAGCTAAGTTTTGGGAAGGAGCGGATAT 778
Query 810 TTTGGTTTTCAACACTTATGTTTGGTGGATGAGTGGTCTCCGCATGAAAGCTCTGTGGGG 869
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 779 TTTGGTTTTCAACACTTATGTTTGGTGGATGAGTGGTCTCCGAATGAAAGCTCTGTGGGG 838
Query 870 TTC-TTTCGGAAATGGAGAGAGTGGTGCAGAGGCACTAGACACACAAGTGGCTTACAGGC 928
||| ||| |||||||||||||||||||| ||||| ||||||||| ||||||||||||||
Sbjct 839 TTCGTTT-GGAAATGGAGAGAGTGGTGCGGAGGCGTTAGACACACCAGTGGCTTACAGGC 897
Query 929 TAGGACTCAAGACATGGGCTAATTGGGTAGACTCCACCGTTGACCCTAATAAGACCAGAG 988
|||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 898 TAGGGCTCAAGACATGGGCTAATTGGGTTGACTCTACCGTTGACCCTAATAAGACGAGAG 957
Query 989 TCTTCTTCACCACCATGTCTCCTACTCATACTAGAAGTGCGGATTGGGGAAAGCCAAACG 1048
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 958 TCTTCTTCACCACCATGTCTCCTACTCATACTAGAAGTGCGGATTGGGGAAAGCCAAATG 1017
Query 1049 GCACGAAGTGTTTCAACGAGACGAAACCGATAAAAGATAAGAAGTTTTGGGGAACAGGCT 1108
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1018 GCACGAAGTGTTTCAACGAGACGAAACCCATAAAAGATAAGAAGTTTTGGGGAACTGGCT 1077
Query 1109 CTAACAAGCAGATGATGAAAGTAGTGTCAAGCGTGAT-AAAGCACATGACTACGCATGTG 1167
|||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||| |||
Sbjct 1078 CTAACAAGCAGATGATGAAAGTCGTGTCAAGCGTCATCAAA-CACATGACCACGCACGTG 1136
Query 1168 ACAGTCATCAACATCACGCAGCTCTCTGAGTATCGCATCGACGCTCACACATCAGTTTAC 1227
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1137 ACTGTCATCAACATCACGCAGCTCTCTGAGTATCGCATAGACGCTCACACATCAGTTTAC 1196
Query 1228 ACCGAGACAGGTGGCAAGATCCTAACCGCTGAGCAGAGGGCTGATCCAATGCATCACGCT 1287
||||||||||||||||||||| |||| |||||| ||||||||||||| ||||||||||||
Sbjct 1197 ACCGAGACAGGTGGCAAGATCTTAACGGCTGAGGAGAGGGCTGATCCTATGCATCACGCT 1256
Query 1288 GATTGTATACATTGGTGTTTACCTGGACTACCCGATACATGGAATCGGATCCTATTGGCT 1347
|||||||||||||||||| |||||||| | |||||||||||||| |||||| ||||||||
Sbjct 1257 GATTGTATACATTGGTGTCTACCTGGATTGCCCGATACATGGAACCGGATCTTATTGGCT 1316
Query 1348 CATTTGTAAATCAAGCTAGGAGGAA 1372
|||||||||||||||||||||||||
Sbjct 1317 CATTTGTAAATCAAGCTAGGAGGAA 1341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55459396720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5