BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01370.1
Length=1501
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939531 jgi|Araly1|939531|scaffold_600075.1 2193 0.0
> Ahg939531 jgi|Araly1|939531|scaffold_600075.1
Length=1325
Score = 2193 bits (1187), Expect = 0.0
Identities = 1285/1331 (97%), Gaps = 12/1331 (1%)
Strand=Plus/Plus
Query 25 TCATCATTATCAGCCATCACCATGACCCAACGAGCCAACCCTAAGACCGGCTGCCTCACG 84
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCATCATCATCAGCCATCACCATGACCCAACGAGCCAACCCTAAGACCGGCTGCCTCACG 60
Query 85 GCGGTAGTCCGCCGTCTTCTATGCTCTGGTAGCCAACAGACTCACCCTTCCGACAACATC 144
|||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 61 GCGGTAGTTCGCCGTCTTCTATGCTCCGGTAGCCAACAAACTCACCCTTCCGACAACATT 120
Query 145 CTCGACTCTGACGAAACACTCCAACTACTAATCTCTTACGAAGAAAACGAAGAGCCAAAG 204
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 121 CTCGACTCTGACGAAACACTCCAACTACTAATCCCTTACGAAGAAATCGAAGAGCCAAAG 180
Query 205 AAAGAGATCAAAACCGAAACCGAAACCCAAAACGATGACGTCTCTCTTCACCCT---CCA 261
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 181 AAAGAGATCAAAACCGAAACCGAAACCCAAAACGACGACGTCTCTCTTCACCCTCCACCA 240
Query 262 CCACCTCCTCCTCCTCCCAACGTTGTAGCCAAACTCATGGGGCTAGATCATCCCGCACCC 321
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 CCACCTCCTCCTCCTCCCAACGTTGTAGCCAAACTCATGGGGCTAGATCATCCTGCACCG 300
Query 322 GGATCAAAACGGTTCCGGTACTTTGATGATTCCGGTTCGGCTGTCACAAGGAGCAAATCG 381
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 GGATCAAAACGGTTCCGGTACTTTGACGATTCCGGTTCGGCTGTCACAAGGAGCAAATCG 360
Query 382 GTTAACTTCATGGACTACATCCTAAAAGGTCACGAGGAAGAAGAAGAAAACGAAGACGAG 441
||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||
Sbjct 361 GTTAACTTCATGGACTACATCCTAAGAGGTCACGAGGAAGAAGAAGAAGATGAAGACGAG 420
Query 442 AAAGACGGTCAACGTCAGTGCCGGAGAGTCAAAGCTTCCGTTTCTTTCCGTGAGATAGTC 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAAGACGGTCAACGTCAGTGCCGGAGAGTCAAAGCTTCCGTTTCTTTCCGTGAGATAGTC 480
Query 502 CCAACCTCGGCGAGATGGAGCTCTAATAACCAACAAAAGAAACATGATTTCCTGCTGTTG 561
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 481 CCAACCTCGGCGAGATGGAGCTCTAATAACCAACAAAAGAAACATGATTTCTTGCTTTTG 540
Query 562 TATCTTGACAAGCTTGACGAGAAGAGAGAACTTGTCGGATCATCGTCTTTTTCGAGGTCT 621
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 TATCTCGACAAGCTCGACGAGAAGAGGGAACTTGTCGGATCATCGTCTTTTTCGAGGTCT 600
Query 622 AAAAGGTTCGAGAAGGTTGTGGAAGATTCCAAGAAGCCGCCATTGCCACCTTCGGCGCCG 681
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
Sbjct 601 AAAAGGTTCGAGAAGGTTGTGGAAGATTCCAAGAAGCCGCCATTGCCA-CTTC--CGGTG 657
Query 682 AAGAAGAAGGAGAACGAGAAAGTTGCTAAGAAGTTTAAAGATGAGCCGAGGAAAGTTGCG 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AAGAAGAAGGAGAACGAGAAAGTTGCTAAGAAGTTTAAAGATGAGCCGAGGAAAGTTGCG 717
Query 742 AAGAAGAAGAAGAGTGAGAATCGAAATGACGTTAACGGAGCCAAGAAAGTTCGTTGGTTT 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AAGAAGAAGAAGAGTGAGAATCGAAATGACGTTAACGGAGCCAAGAAAGTTCGTTGGTTT 777
Query 802 CTTTCTCCATCTAAGAGTAAGTCGTCGTCGGAGAAGACTGCGCTTCTAGGAGAATCAAAG 861
|||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 778 CTTTCTCCGTCTAAGAGTAA---GTCGTCGGAGAAGACGGCGCTTCTAGGAGAATCAAAG 834
Query 862 AATATTCGGGCTGATGAGTTTATCGGAAAAGAGAGTGAGTCGCCGGAGAATAAGTCTAAC 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AATATTCGGGCTGATGAGTTTATCGGAAAAGAGAGTGAGTCGCCGGAGAATAAGTCTAAC 894
Query 922 GCGAGTCCGGTTTCGGTTCTTGATCGAGATCTTTATGATTATCTAATCCTTGACGATGAT 981
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 895 GCGAGTCCGGTTTCGGTTCTTGATCGAGATCTTTATGATTATCTTATCCTTGACGATGAC 954
Query 982 TACTACTTCTCAGGAGGAGATTCAGAAAGTGCATCGGAGTTGTCAACAAAGCAAGTAGAG 1041
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 955 TACTACTTCTCAGGAGGAGATTCAGAAAGTGCATCGGAGTTGTCAACAAAGCGAGTAGAG 1014
Query 1042 ---ACAGCAACAAAATCTTCATGTTCTTCATCACCAGCAAAAACAAAAACAAGTACCAAG 1098
||| |||||||||| |||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1015 ACAACAACAACAAAATCCTCATGTTCTTCATCACCAGCAAGAACAAGAACAAGTACCAAG 1074
Query 1099 AAAGAAAACAACAATAGCACCAACAATGATTCAGAAGAGACAGAGTTTATCACAAAACTA 1158
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1075 AAAGAAAACAACAATAGCACCAACAATGATTCTGAAGAGACAGAGTTTATCACAAAACTA 1134
Query 1159 ATGAATATGCTCTCAGATCTGTCTGAAGAAGACATGAAGTCTTCCACTTGGGTTTCTACT 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 ATGAATATGCTCTCAGATCTGTCTGAAGAAGACATGAAGTCTTCCACTTGGGTTTCTACT 1194
Query 1219 TCGTCAACTAAACCCGTTGACTTTACTCAGGTCGAAGATTTTTGTGTCGAATTTGGTCAA 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 TCGTCAACTAAACCCGTTGACTTTACTCAGGTCGAAGATTTTTGTGTCGAATTTGGTCAA 1254
Query 1279 GAGATTCTTGACCTTGTTATGGACCAGCTAGTTGATGAACTCTGTATCTAGTTTAAATTC 1338
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1255 GAGATTCTTGACCTTGTTATGGACCAGTTAGTTGATGAACTCTGTATCTAGTTTAAATTC 1314
Query 1339 CCAATTATCAG 1349
|||||||||
Sbjct 1315 TAAATTATCAG 1325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56183111375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5