BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01380.1
Length=1267
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486939 jgi|Araly1|486939|fgenesh2_kg.6__73__AT5G01380.1 1668 0.0
> Ahg486939 jgi|Araly1|486939|fgenesh2_kg.6__73__AT5G01380.1
Length=1179
Score = 1668 bits (903), Expect = 0.0
Identities = 1132/1232 (92%), Gaps = 57/1232 (5%)
Strand=Plus/Plus
Query 27 ctctgtcttctcttctttttttcaatgaaacctctcttcATTTATAAGTAACCCAACaaa 86
||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 CTCTGTCTTCTCTTCTTTTTTTCAATGAAACCTCTCTTCATTTATAA-T----------- 48
Query 87 aaaaTAAAATTATCTCCCTCTTATTTCTTCTCTTCACGTCACAAAGACAATTCGATTCCA 146
| || |||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct 49 ----T--AA--ATCTCCCTCTTATTTC-TCT-TT-ACGTCACAAAGACAATTCGATTCC- 96
Query 147 AATAATGGACCGACGTAACCCTTTCCAACATCACCACCACCACCATCAGCTTCATCATCA 206
|| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 97 AACAATGGATCGACGTAATCCTTTCCAACATCACCACCACCACCATCAGCTTCATCATCA 156
Query 207 CTTGATCCAACAGCAACAGCTTCCTCCGCCGCCGCTGAGCACCACGGCGACGATGGATCC 266
|||||||||||||||||||| | ||||||||||| ||||| |||||| ||||||||||
Sbjct 157 CTTGATCCAACAGCAACAGC-T--TCCGCCGCCGCAAAGCACGACGGCGGCGATGGATCC 213
Query 267 CGGCGGAGGAGGAGGAGGTGGGGAGAGAATCCCACAGTGGAGCATAGAGGAGACAAAGGA 326
|||||||||||| || | ||||||||||||||||| |||||||||||||||||||
Sbjct 214 CGGCGGAGGAGG-TGA--T---CAGAGAATCCCACAGTGGGGCATAGAGGAGACAAAGGA 267
Query 327 GCTTTTGGCTATAAGAGAAGAACTTGATCAAACTTTCATGGAGACCAAACGTAATAAGCT 386
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 268 GCTTTTGGCTATAAGAGAAGAACTTGATCAGACTTTCATGGAGACCAAACGTAATAAGCT 327
Query 387 TCTTTGGGAAGTCGTGGCTGCTAAGATGGCCGACAAGGGTTTTGTCCGAAGCGCAGAACA 446
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 328 TCTTTGGGAAGTCGTGGCTGCTAAGATGGCCGACAAGGGTTTTGTCCGGAGCGCAGAACA 387
Query 447 ATGTAAGAGCAAGTGGAAGAACCTCGTCACTAGATACAAGGCGTGTGAGACCACTGAGCC 506
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 388 ATGTAAGAGCAAGTGGAAGAACCTCGTCACCAGATACAAGGCGTGTGAGACCTCTGAGCC 447
Query 507 AGATGCTATTAGGCAGCAGTTCCCATTCTACAATGAGATTCAGTCGATTTTTGAAGCAAG 566
||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 448 AGATGCTATTAGGCAGCAGTTCCCATTCTACAATGAGATTCAGTCGATTTTCGCAGGAAG 507
Query 567 AATGCAAAGAATGCTGTGGTCAGAAGCCACAGAACCAAGCACTTCCTCGAAGAGAAAACA 626
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 508 AATGCAAAGAATGTTGTGGTCAGAAGCCACAGAACCAAGCACTTCCTCCAAGAGAAAGCA 567
Query 627 TCATCAATTTTCATCTGAT---GATGAAGAAGAAGAAGTTGACGAACCAAATCAAGATAT 683
||||||||||||||||||| || |||||||||||||||||||| ||||||||||| ||
Sbjct 568 TCATCAATTTTCATCTGATGAAGAAGAAGAAGAAGAAGTTGACGAGCCAAATCAAGACAT 627
Query 684 CAACGAGGAATTATTGTCTTTAGTAGAGACACAGAAA-AGAGAGACAGAAGTGATTACTA 742
||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 628 CAACGAGGAATTATTGTCTTTAGTAGAGACACA-AAAGAAAGAGACAGAAGTGATTACTA 686
Query 743 CTAGTACTTCGACCAATCCAAGAAAACGTGCaaaaaaaGGAAAAGGCGTTGCGAGTGGTA 802
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 687 CTAGTACTTCGACCAATCCAAGAAAACGTGCGAAAAAAGGAAAAGGCGTTGCAAGTGGTA 746
Query 803 CGAAAGCTGAAACTGCGGGTAATACACTAAAAGATATATTGGAGGAGTTTATGAGGCAAA 862
|||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 747 TGAAAGCTGAAACGGCGGGTAATACATTAAAAGATATATTGGAGGATTTTATGAGGCAAA 806
Query 863 CGGTgaagatggaaaaggaatggagagatgcatgggagatgaaggagatagagagggaga 922
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 CAGTGAAGATGGAGAAGGAATGGAGAGATGCATGGGAGATGAAGGAGATAGAGAGGGAGA 866
Query 923 agagagagaaagagtggcggaggagaatggcggagctagaggaggaaagagccgccacag 982
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct 867 AGAGAGAGAAAGAGTGGCGGAGGAGAATGGCGGAGCTAGAGGAGGAGAGAGCCGCCGCTG 926
Query 983 aaaggaggtggatggagagagaggaagagagacggttgagagaagaagctagggctcaga 1042
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 AGAGGAGGTGGATGGAGAGAGAGGAAGAGAGACGGTTGAGAGAAGAAGCTAGGGCTCAGA 986
Query 1043 agagagaTTCTCTCATCGATGCTTTGCTTAATAGGCTTAATAGAGATCATAATGATGATC 1102
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 AGAGAGATTCTCTCATTGATGCTTTGCTTAATAGGCTTAATAGAGATCATAATGATGATC 1046
Query 1103 ATCATAATCAAGGTTTCTAAGTTCTCATTATTTGTGTTAAGCATAAGTTAATTAGCTAGT 1162
|| | | ||||||||||||| || | ||||||||| ||||||||||||||||| | ||
Sbjct 1047 AT-A-A-TCAAGGTTTCTAATTTTTAATTATTTGTTTTAAGCATAAGTTAATT---T-GT 1099
Query 1163 TAATTTGTTAGGCAAATCAATTTAGATAATATATCTAAATTAATGTTTGTTTTATAATAT 1222
|| | | |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 1100 TA----G---G-CAAATCAATTTAGATAATAT--CTAAATTAATGTTTGTTTTATTA-AT 1148
Query 1223 TTATATGAACTATTGAAATTTCCAAAAAGAAA 1254
| |||||||||||||||||||| |||||||||
Sbjct 1149 T-ATATGAACTATTGAAATTTCGAAAAAGAAA 1179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47348662914
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5