BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01400.1
Length=4657
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486936 jgi|Araly1|486936|fgenesh2_kg.6__70__AT5G01400.1 3134 0.0
Ahg949003 jgi|Araly1|949003|scaffold_800890.1 183 7e-45
Ahg947120 jgi|Araly1|947120|scaffold_703349.1 183 7e-45
> Ahg486936 jgi|Araly1|486936|fgenesh2_kg.6__70__AT5G01400.1
Length=4627
Score = 3134 bits (1697), Expect = 0.0
Identities = 1843/1913 (96%), Gaps = 11/1913 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCGTATTCAAGAGCAAGGCTTAAAGATCTCGCGAATTCCGCCAAATCAGCGACG 60
||||||||||||||||||| ||||||| ||| ||| |||| |||||||||||||| ||
Sbjct 1 ATGGCTTCGTATTCAAGAGAAAGGCTTGAAGGTCTAGCGAGCTCCGCCAAATCAGCCACA 60
Query 61 GAATTGCCTCCCAAGCTGCAACGCTTGCGCTATATGCGCCGGGATTTGCAAAAAGACGAT 120
||||||||||| || || ||||||||||||||| ||||||||||||||||||| || ||
Sbjct 61 GAATTGCCTCCGAAACTACAACGCTTGCGCTATTTGCGCCGGGATTTGCAAAAGGATGAA 120
Query 121 TCCGTTTTTCCCACGGAGTTGCTTCCTCACCTTTTCGATCTTCTCTCCGATCAATTCGGT 180
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCGTTTTTCCCACCGAGCTGCTTCCTCACCTTTTCGATCTTCTCTCCGATCAATTCGGT 180
Query 181 GCTGTCCGCAAGTTTGTCGCCGAGATACTTGGTGAAATTGGCCTGAAATATGTGGAATTA 240
|||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||
Sbjct 181 GCTGTCCGCAAGTTTGTCGCCGAGATCCTTGGTGAAGTTGGATTGAAATATGTGGAATTA 240
Query 241 ATACCTGAAATAGTGCCCCTTTTAATTAAGTCTCTTGAAGATGAGACACCAGCTGTGGCC 300
||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 TTACCTGAAATAGTACCGCTTTTAATTAAGTCTCTCGAAGATGAGACACCAGCTGTGGCG 300
Query 301 AGGCAGGTCATTGCTTGTGGAGCTGATTTATTCCGTTCCACCCTCGAAAGAGTGGCAGTT 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 AGGCAGGTCATTGCTTGTGGAGTTGATTTATTCCGTTCCACCCTCGAAAGAGTGGCAGTT 360
Query 361 CAGGGTTTGCATTCTAGTGAGTTGAATGATCTTCTTGAATCTTCATGGACATGGTTGATT 420
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 361 CAGGGTTTGCATTCTAGTGAGTTGAATGATCTTCTTGAATCTTCGTGGACATGGGTGATT 420
Query 421 AAGTTCAAGGATGAAATATGCTCAGTGGCTTTCAAGCAAGGAAATAGTGGTGTAAAATTA 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 421 AAGTTCAAGGATGAAATATGCTCATTGGCTTTCAAGCAAGGAAATAGTGGTGTAAAATTA 480
Query 481 TGCGCTATGAAATTTGTGGAAGCGCTTATTCTCTTGTATACTCCTCATGAAGGAATTGAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGCGCTATGAAATTTGTGGAAGCGCTTATTCTCTTGTATACTCCTCATGAAGGAATTGAA 540
Query 541 GCAGATTTTAATATATCTATTCTCCGTGGGGGTCATCCTGTTTTGAAAATTGGAGATTTG 600
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 541 GCAGATTTTAATATATCTATTCTCCGTGGTGGTCATCCTGTTTTGAAAATTGGAGACTTG 600
Query 601 TCAATTGAGGCCAGCCAGAAATTGGGTTTACTGCTTGATCAGCTTAGGCACCCTGCAGCA 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCGATTGAGGCCAGCCAGAAATTGGGTTTACTGCTTGATCAGCTTAGGCACCCTGCAGCA 660
Query 661 AAATCTCTAAATAGCTCGACGATTATTGTTCTTATCAATAGTCTTTCATCAGTTGCAAAG 720
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 661 AAATCTCTAAATAGCTCGACGATTATTGTTCTCATTAATAGTCTTTCATCAGTTGCAAAG 720
Query 721 AAACGTCCTGCATACTGTGGACGAATTCTACCTGTTCTACTGAGCTTGGATCCCCTAAGC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAACGTCCTGCATACTGTGGACGAATTCTACCTGTTCTACTGAGCTTGGATCCCCTAAGC 780
Query 781 TTTCTCAAAGGAGTGTATGCTGCAGCAACAAATCTTGCCTTGAAGACTGTATTTCTCTCC 840
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 781 TTTCTCAAAGGAGTGCATGCTGCAGCAGCAAATCTTGCCTTGAAGACTGTATTTCTCTCC 840
Query 841 TGCTTGAAATGTACACATCCCGCTGCTGCACCGGACCGGTTGACCAGTGCTCTTAAAGAG 900
||||||||||||| |||||||||||| ||||||||| |||||| ||||||||||||||||
Sbjct 841 TGCTTGAAATGTAAACATCCCGCTGCCGCACCGGACTGGTTGATCAGTGCTCTTAAAGAG 900
Query 901 ATAGAAGGTGGAGGTCAGGCAGCCAAAGCGAAAGATCTCTTTTACAAGACTAACGGAAGC 960
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATAGAAGGTGGAGGTCGGGCAGCCAAAGCGAAAGATCTCTTTTACAAGACTAACGGAAGC 960
Query 961 ATTCAGGACAAAGACAGTGTAGAAGATACCAAGGTATCAGTGGAAGAGAATCCTCTCTGT 1020
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 961 ATTCAGGACAAAGACAGTGTAGAGGATACCAAGGTATCAGTGGAAGAGAATCCTCTCTGT 1020
Query 1021 GCAAGTTCTGATGTAGCAGAAAGTAACTTAAGTAGGAAAAGATCTGGATCAGAATACAAT 1080
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1021 GCAAGTTCTGATGTTGCAGAAAGTAACTTAAGTAGGAAAAGATCTGGATCAGAATACAGT 1080
Query 1081 ATTGATCTAAATGGAGATGCTTCCGATGGAAAACGTGCAAGAATAACACCTTCTGTGTCA 1140
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1081 ATTGATCTAAATGGAGATGCTTCGGATGGAAAACGTGCAAGAATAACACCTTCTGTGTCA 1140
Query 1141 GAAGAATCCACTGACGGATTAAATGGTAATGATGG-GGTCTCTCTACCTCGGGTTGCTTC 1199
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1141 GAAGAATCCACTGACGGATTAAATGGTAATGATGGTGG-CTCTCTACCTCGGGTTGCTTC 1199
Query 1200 TACCTCGACCGGACCAAGTGATAGCAGAGGAGTGAGTGATAGTGGACCTGCTCAGCAGCT 1259
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1200 TACCTCGACCGGACCAAGTGATAGCAGAGGAGTGAGTGATACTGGACCTGCTCAGCAGCT 1259
Query 1260 AGTTGGTTTGTTTGGAACCTTGGTTTCTCAGGGTGAAAAAGCAATTGGATCTTTGGAGAT 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AGTTGGTTTGTTTGGAACCTTGGTTTCTCAGGGTGAAAAAGCAATTGGATCTTTGGAGAT 1319
Query 1320 TCTTATTTCAAGTATTTCGGCGGATTTACTTACTGATGTTGTGATGGCTAATATGCATAA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TCTTATTTCAAGTATTTCGGCGGATTTACTTACTGATGTTGTGATGGCTAATATGCATAA 1379
Query 1380 TATTCCACCAAATTGTTCTTCTTATGCTGATGGCACCGATGAGTTGGTGATGAACATGTG 1439
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TATTCCACCAAATGGTTATTCTTATGCTGATGGCACCGATGAGTTGGTGATGAACATGTG 1439
Query 1440 TATAGTTGGCAGTGATGCACAAATTAAATATCCACCATCATTTGTAGCGGGTGTCCTTTC 1499
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1440 TATAGTTGGCAGTGATGCACAAATTAAATATCCACCATCATTTATAGCGGGTGTCCTTTC 1499
Query 1500 ATTGTCAACCGCATTCCCACCAATTGCTGCCCTGATAAATCCTCACAATGAAGATGAGGA 1559
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 ACTGTCAACCGCATTCCCACCAATTGCTGCCCTGATAAATCCTCACAATGAAGATGAGGA 1559
Query 1560 AGTCTATTCTGTTCATGTGGACCAGCAAATGTTTCCAGCTGAAGATGCAAGAACTCCACC 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 AGTCTATTCTGTTCATGTGGACCAGCAAATGTTTCCAGCTGAAGATGCAAGAACTCCACC 1619
Query 1620 TGGCTTATTAGCTACCTGTGATACTTCTTTTCCAGAAAATGAAGAAAGCAATACTGTGTC 1679
||||||||||||| ||| ||| || |||||||||||||||||||||||||||||
Sbjct 1620 TGGCTTATTAGCTTCCT------CTT-TT--CCAGAAAATGAAGAAAGCAATACTGTGTC 1670
Query 1680 TCCACAAAATGTGCATTACATAGGGAATAGAGAAAGTGGAATACCTGGACTGGAATCTTC 1739
|| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1671 TCTACAAAATGTGCATTACATAAGGAAAAGAGAAAGTGGAATACCTGGACTGGAATCTTC 1730
Query 1740 TGCTCAACATGATGGGTCAGGAGCCCTTGTTACTAATGTATTGAGTTCTACGAATGTGGA 1799
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1731 TGCTCAACATGATGTATCAGGAGCCCTTGTTACTAATGTATTGAGTTCTACGAATATGGA 1790
Query 1800 GGCTGCAAGCAAAAATCAAAATGCGAGTTTCAGTGGAAAACTTCTTGTCGATGTAATTCC 1859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 GGCTGCAAGCAAAAATCAAAATGCGAGTTTCAGTGGAAAACTTCTTGTCGATGTAATTCC 1850
Query 1860 CTCAATGTCTGTGGATAAGTTGGAGGAATTTAGTCCAAAGGCGGTTGGCACAG 1912
|||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1851 CTCAATGTCTGTGGATAAGTCGGAGGAATTTAGTCCAAAGGCGGTTGGCACAG 1903
Score = 2462 bits (1333), Expect = 0.0
Identities = 1618/1749 (93%), Gaps = 45/1749 (3%)
Strand=Plus/Plus
Query 2655 TGATGATTGTGATAAGATGGATCTTGATCTGAAAAGTCCACCAAACAAACCGCAACACAG 2714
|||||||||| |||||| ||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 2724 TGATGATTGTAATAAGAAGGATCTTGATCTGAAAAGTCCACCAAATAAACCGCAGCAC-G 2782
Query 2715 -TATTAGTGGTATGAGTATGGAGACGCCCTCCGAAGCAACATCATCATCAACTTCAGTTA 2773
||| ||||||| | |||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 2783 TTATCAGTGGTACGGGTATGGAGACGCCCTCCGAAGC-A-A-CATCATCAACTTCAGTTA 2839
Query 2774 CTGAAGCTCAACGCTGCTTGTCACTCTATTTTGCTCTCTGTACCAAGGTCTTGCGAATTT 2833
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 2840 CTGAAGCTCAACGCTGCTTGTCACTCTATTTTGCTCTCTGTACAAAGGTCTTGGGAATTT 2899
Query 2834 TTACCATTCTTCGACTAATGACTAATCTAGTCTTTAACATATACAAGAATGCATCAGATC 2893
||||||||||||||||||||| |||||||| ||| | || ||||||| |||||||||||
Sbjct 2900 TTACCATTCTTCGACTAATGATTAATCTAGCCTTCATTATTTACAAGAGTGCATCAGATC 2959
Query 2894 CCGTTAAGCAGGCTATTCATCTTCAAATCCCTATTCTAGTTCGTACTATGGGCTCATCCT 2953
| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 2960 CAGTTAAGCAGGCTATTCATCTTCAAATCCCAATACTAGTTCGTACTATGGGCTCATCCT 3019
Query 2954 CTGAGCTTCTTAAAATTATAGCAGACCCACCAAGTGGGAGTGACAACCTTCTTATACAGG 3013
||||||||||||||||||||||||||||||||| ||||||||| |||||||| || ||||
Sbjct 3020 CTGAGCTTCTTAAAATTATAGCAGACCCACCAACTGGGAGTGAGAACCTTCTAATGCAGG 3079
Query 3014 TTCTTCAAACCCTCACCGAGGGGCCCACTCCTTCTTCAGAATTGATACTTACTATACGGA 3073
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 3080 TTCTTCAAACCCTCACCGAGGGGCCCACGCCTTCTTCAGAATTGATACTTACTATACGAA 3139
Query 3074 AGTTGTTTGATACAAGAATAAAGGATGTAGAGATTCTTTTCCCAATTTTGCCATTCCTGC 3133
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3140 AGTTGTTTGATACAAGAATAAAGGATGTAGAAATTCTTTTCCCAATTTTGCCATTCCTGC 3199
Query 3134 CAAGAGATGATGTTCTCCGCATTTTTCCCCATATGGTGAATCTTCCTATGGAGAAATTCC 3193
| ||||| ||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 3200 CTAGAGACAATGTTCTACGTATTTTTCCCCATATGGTGAATCTTCCTATGGAGAAATTTC 3259
Query 3194 AAGTTGCACTTTCTCGTGTGCTGCAGGGATCATCTCAATCTGGCCCAGTGCTTTCTCCAT 3253
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3260 AAGTTGCACTCTCTCGTGTGCTGCAGGGATCATCTCAGTCTGGCCCAGTGCTTTCTCCAT 3319
Query 3254 CTGAAGCTTTAATTGCTATCCATAGCATTGACCCAGCAAGAGATGGAATACCACTTAAAC 3313
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3320 CTGAAGTTTTAATTGCTATCCATGGCATTGACCCAGCAAGAGATGGAATACCACTTAAAC 3379
Query 3314 AGGTCACAGATGCATGCAATACCTGTTTTGCGCAGAGGCAGACATTCACTCAACAGGTTT 3373
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3380 AGGTCACAGATGCATGCAATACCTGTTTTGCACAGAGGCAGACATTCACTCAACAGGTTT 3439
Query 3374 TAGCCGGTGTTCTGAATCAACTGGTCCAGCAAATTCCACTGCCAATGTTATTCATGCGTA 3433
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3440 TAGCCGGCGTTCTGAATCAACTGGTCCAGCAAATTCCACTGCCAATGTTATTCATGCGTA 3499
Query 3434 CAGTTTTACAAGCTATTGGTGCTTTTCCAGCTCTGTCGGACTTCATCCTGGAGATTCTTT 3493
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 3500 CAGTTTTACAAGCTATCGGTGCTTTTCCAGCTCTGTCGGACTTCATCCTGGAGATCCTTT 3559
Query 3494 CTCGTCTCGTTAGCAAACAGATATGGAAATATCCGAAACTGTGGGTTGGGTTTTTGAAAT 3553
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3560 CTCGTCTCGTTAGCAAACAGATATGGAAAAATCCGAAACTGTGGGTTGGGTTTTTGAAAT 3619
Query 3554 GCACACAGACAACACAGCCTCAATCATATAAGGTCTTACTACAGCTTCCTCCACTTCAAC 3613
| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 3620 GTACACAGACAACACAGCCTCAATCATACAAGGTCTTACTACAGCTTCCTCCACCTCAAC 3679
Query 3614 TGGGAAACGCATTGACTAAAATCCCGGCCTTAAGAGCTCCGCTAACCGCACATGCCAGCC 3673
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3680 TGGGAAATGCATTGACTAAAATCCCGGCCTTAAGAGCTCCGCTAACCGCACATGCCAGCC 3739
Query 3674 AGCCAGAGATTCAATCTTCACTTCCAAGGTCTACATTGGCTGTTCTTGGACTTGTCCCTG 3733
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3740 AGCCAGAGATTCAGTCTTCACTTCCAAGGTCTACATTGGCTGTTCTTGGACTTGTCCCTG 3799
Query 3734 ATTCTCAAGGAACACAAACAAGCCAAGTGCAAGCGAATGAGACACAAACGAGTCAGGAAC 3793
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 3800 ATTCTCAAGGAACACAAACGAGCCAAGTGCAAGCGAATGAGACACAAAGGAGTCAGGAAC 3859
Query 3794 AGCAGCAACAGCAAGCAAGCGAGCCACAGCAAACGAGCCAGTCTCAGCAAGTTTCTGTAC 3853
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 3860 AGCAGCAAGAGCAAGCAAGCGAGTCACAGCAAACGAGCCAGTCTCAGCAAGTTTCTGTGC 3919
Query 3854 CATTGAGCCACTCCCAAGTAGATCACCAGGAACCCAGTCAGGTAGTTGCCAGTCAGTCTC 3913
||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3920 CATTGAGTGACTCTCAAGTAGGTCACCAGGAACCCAGTCAGGTAGTTGCCAGTCAGTCTC 3979
Query 3914 AAAGCAGTCCCATAGGGACCGT-CCAGTCAGCAATGAGTCAGTCTCAGAACAGTCCCATA 3972
|||||| ||||||||| ||| || ||| | |||||||||||||||||||||||||||
Sbjct 3980 AAAGCAATCCCATAGGT-CCGGGCCTGTCTGAAATGAGTCAGTCTCAGAACAGTCCCATG 4038
Query 3973 GATACGGGCCGGTCTGAAATGAGTCAGTCTCAGAACAGTCCCATAGATACGGGCCGGTC- 4031
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 4039 GATACGGGCCGGTCTGAAATGAGTCAGCCTCAGAACAGTCCCATAGATACGGGCCG-TCC 4097
Query 4032 TGAAATGAGTCAGTCTCAGAACAGTCCCATAGATACGGGCCGGTCTGAAATGAGTCAGTC 4091
||||||||||||| ||||||||||||||||||||||||| || |||||||||||| ||||
Sbjct 4098 TGAAATGAGTCAGCCTCAGAACAGTCCCATAGATACGGGACGATCTGAAATGAGTGAGTC 4157
Query 4092 TCAGAACAGTCCCATAGATACGGGAAGATCTGAAATGAGTGAATCTCAGAGCAGTCCTAT 4151
||||| ||||||||||| | |||| | ||||| || || | | || |
Sbjct 4158 TCAGAGCAGTCCCATAGGTGCGGGCCGGTCTGA---GA-TG-------G-G---TC--A- 4199
Query 4152 TGGTCAGTCACAAAGCAGTCCTATTGGTACTGGCCAGTCTGATATGAGTCAAACCCCTCA 4211
| || | || || ||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 4200 -G-TC-G-CA-AA-GCAGTCCTATTGGTACTGGCCAGTCTGATTTGAGTCAGACCCCTCA 4253
Query 4212 AGTGTCGGACTCGAGTGCTCCAGAACCAACAAGCCATACTCGGACATCAGATCCTCAAGC 4271
|||||| |||||||||||||||| |||||| |||||||||| ||||||||||||||||||
Sbjct 4254 AGTGTCAGACTCGAGTGCTCCAGTACCAACGAGCCATACTCAGACATCAGATCCTCAAGC 4313
Query 4272 GTCAAGCCAGACAC----T-ACG---A-GATGATGATGA-GA-A-GATAGACGACACAGC 4319
|||||| ||||||| | | | | ||||||||||| || | |||||||||||||||
Sbjct 4314 GTCAAGGCAGACACAGCGTGATGGTGATGATGATGATGATGAGAAGATAGACGACACAGC 4373
Query 4320 AACCTCAGAAAACGAGGTGACAGAAATCGAGAAATCAAAAGAATCTTCCgaagaagaaga 4379
|||||| | |||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 4374 AACCTCGGGAAACGAGGTGACAGAAATTGAGAAATCAAAAGAATCTTCTGAAGAAGATGA 4433
Query 4380 agaagaaga 4388
|||||||||
Sbjct 4434 AGAAGAAGA 4442
Score = 1236 bits (669), Expect = 0.0
Identities = 723/749 (97%), Gaps = 3/749 (0%)
Strand=Plus/Plus
Query 1910 CAGTTGCTTCGGCGAGTCAGTTTGTCTTACCTAAGATATCAGCACCTGTTGTCGACCTTT 1969
|||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1937 CAGTTGCTTCTGCGCCTCAGTTTGTCTTGCCTAAGATATCAGCACCTGTTGTCGACCTTT 1996
Query 1970 CTGATGAAGAGAAAGACAGTTTACAAAAGCTGGtttttttGCGCATTGTTGAAGCATATA 2029
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1997 CTGATGAAGAGAAAGACAGTTTACAAAAGCTGGTGTTTTTGCGCATTGTTGAAGCATATA 2056
Query 2030 AGCAAATATCAATGTCTGGTGGCTCACAACTCCGCTTTTCTCTTCTTGCTCATTTAGGAG 2089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2057 AGCAAATATCAATGTCTGGTGGCTCACAACTCCGCTTTTCTCTTCTTGCTCATTTAGGAG 2116
Query 2090 TTGAGTTTCCTTCAGAGTTAGACCCTTGGAAAATATTACAGGAGCACGTTCTCTCGGATT 2149
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2117 TTGAGTTTCCTTCAGAGTTAGACCCTTGGAAAATATTACAGGAGCACGTTCTCTCAGATT 2176
Query 2150 ATTTGAATCATGAGGGACATGAGTTGACTGTGCGGGTTCTTTACAGGCTATACGGGGAGG 2209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2177 ATTTGAATCATGAGGGACATGAGTTGACTGTGCGGGTTCTTTACAGGCTATACGGGGAGG 2236
Query 2210 CAGAAGCAGAACAAGATTTCTTCTCTTCAACTACTGCTGCGTCTGCATATGAAAGTTTCT 2269
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2237 CAGAAGCAGAACAAGATTTCTTCTCTTCAACTACTGCTGCATCGGCATATGAAAGTTTCT 2296
Query 2270 TGCTAACTGTGGCTGAAGCACTAAGAGATTCTTTTCCACCGTCTGACAAATCTTTAAGTA 2329
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2297 TGCTGACTGTGGCTGAAGCACTAAGAGATTCTTTTCCACCATCTGACAAATCTTTAAGTA 2356
Query 2330 AATTGCTTGGAGATTCTCCACATCTGCCGAAATCAGTTCTGATGTTGTTGGAATCGTTTT 2389
||||||| |||||||||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 2357 AATTGCTCGGAGATTCTCCACATCTGCCAAAATCAGTTCTGAAGCTGTTGGAATCGTTTT 2416
Query 2390 GCTGTCCTGGAAGTGGTGAAG---TTGAAAAGGATTTACAACATGGAGACCGTGTTACTC 2446
| |||||||||||| |||||| |||| |||||||||| | ||||||||||||||||||
Sbjct 2417 GTTGTCCTGGAAGTAGTGAAGAAGTTGAGAAGGATTTACCATATGGAGACCGTGTTACTC 2476
Query 2447 AAGGTCTCAGTGCTGTTTGGAGCCTGATTTTAATGAGACCTGGAATCCGGAATGACTGCC 2506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2477 AAGGTCTCAGTGCTGTTTGGAGCCTGATTTTAATGAGACCTGGAATCCGGAATGACTGCC 2536
Query 2507 TGAATATCGCTTTGCAGAGTGCTGTTCATCACTTGGAAGAGATTCGCATGAAAGCAATCC 2566
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2537 TGAATATAGCTTTGCAGAGTGCTGTTCATCACTTGGAAGAGATTCGCATGAAAGCAATCC 2596
Query 2567 GCCTGGTGGCAAACAAACTCTATTCTTTATCATTCATTACAGAACAGATTGAGGAATTTG 2626
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2597 GCCTGGTGGCAAACAAGCTCTATTCTTTATCATTCATTACACAACAGATTGAGGAATTTG 2656
Query 2627 CAAAGGATAGGCTATTTTCTGTCGTAAGT 2655
||||||||||||||||||| |||||||||
Sbjct 2657 CAAAGGATAGGCTATTTTCCGTCGTAAGT 2685
Score = 233 bits (126), Expect = 7e-60
Identities = 199/233 (85%), Gaps = 10/233 (4%)
Strand=Plus/Plus
Query 3904 AGTCAGTCTCA-AAGCAGTCCCATAGG-GACCGTCCAGTCAGCAATGAGTCAGTCTCAGA 3961
||||||||||| || ||||||||| || || | || ||| | |||||||||| ||||||
Sbjct 4015 AGTCAGTCTCAGAA-CAGTCCCAT-GGATACGGGCCGGTCTGAAATGAGTCAGCCTCAGA 4072
Query 3962 ACAGTCCCATAGATACGGGCCGGTC-TGAAATGAGTCAGTCTCAGAACAGTCCCATAGAT 4020
|||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||
Sbjct 4073 ACAGTCCCATAGATACGGGCCG-TCCTGAAATGAGTCAGCCTCAGAACAGTCCCATAGAT 4131
Query 4021 ACGGGCCGGTCTGAAATGAGTCAGTCTCAGAACAGTCCCATAGATACGGGCCGGTCTGAA 4080
||||| || |||||||||||| ||||||||| ||||||||||| | |||||||||||||
Sbjct 4132 ACGGGACGATCTGAAATGAGTGAGTCTCAGAGCAGTCCCATAGGTGCGGGCCGGTCTGAG 4191
Query 4081 ATGAGTCAGTCTCAGAA-CAGTCCCATAGATACGGGA-AGATCTGAAATGAGT 4131
||| ||||||| || || |||||| || | ||| || || ||||| |||||
Sbjct 4192 ATGGGTCAGTCGCA-AAGCAGTCCTATTGGTACTGGCCAG-TCTGATTTGAGT 4242
Score = 198 bits (107), Expect = 3e-49
Identities = 141/157 (90%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 3994 AGTCAGTCTCAGAA-CAGTCCCATAGATACGGGCCGGTCTGAAATGAGTCAGTCTCAGAA 4052
||||||||||| || || |||||||| | |||||| ||||||||||||||||||||||||
Sbjct 3970 AGTCAGTCTCA-AAGCAATCCCATAGGTCCGGGCCTGTCTGAAATGAGTCAGTCTCAGAA 4028
Query 4053 CAGTCCCATAGATACGGGCCGGTCTGAAATGAGTCAGTCTCAGAACAGTCCCATAGATAC 4112
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 4029 CAGTCCCATGGATACGGGCCGGTCTGAAATGAGTCAGCCTCAGAACAGTCCCATAGATAC 4088
Query 4113 GGGAAGATC-TGAAATGAGTGAATCTCAGAGCAGTCC 4148
||| | || |||||||||| | |||||| ||||||
Sbjct 4089 GGGCCG-TCCTGAAATGAGTCAGCCTCAGAACAGTCC 4124
Score = 126 bits (68), Expect = 1e-27
Identities = 97/111 (87%), Gaps = 2/111 (2%)
Strand=Plus/Plus
Query 4039 AGTCAGTCTCAGAA-CAGTCCCATAGATACGGGCCGGTCTGAAATGAGTCAGTCTCAGAA 4097
||||||||||| || || |||||||| | |||||| ||||||||||||||||||||||||
Sbjct 3970 AGTCAGTCTCA-AAGCAATCCCATAGGTCCGGGCCTGTCTGAAATGAGTCAGTCTCAGAA 4028
Query 4098 CAGTCCCATAGATACGGGAAGATCTGAAATGAGTGAATCTCAGAGCAGTCC 4148
||||||||| |||||||| | |||||||||||| | |||||| ||||||
Sbjct 4029 CAGTCCCATGGATACGGGCCGGTCTGAAATGAGTCAGCCTCAGAACAGTCC 4079
> Ahg949003 jgi|Araly1|949003|scaffold_800890.1
Length=436
Score = 183 bits (99), Expect = 7e-45
Identities = 115/123 (93%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 873 GGACCGGTTGACCAGTGCTCTTAAAGAGATAGAAGGTGGAGGTCAGGCAGCCAAAGCGAA 932
||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| ||
Sbjct 257 GGACCGGTTGATCAGTGCTCCTAAAGAGATAGAAGGTGGAGGTCGGGCAGCCAAAGCAAA 316
Query 933 AGATCTCTTTTACAAGACTAACGGAAGCATTCAGGACAAAGACAGTGTAGAAGATACCAA 992
||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||||||
Sbjct 317 AGATCTCTTTTACAAGACTAACGGAAGCACTCAAGATAAAGACAGTGTAGAGGATACCAA 376
Query 993 GGT 995
|||
Sbjct 377 GGT 379
> Ahg947120 jgi|Araly1|947120|scaffold_703349.1
Length=436
Score = 183 bits (99), Expect = 7e-45
Identities = 115/123 (93%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 873 GGACCGGTTGACCAGTGCTCTTAAAGAGATAGAAGGTGGAGGTCAGGCAGCCAAAGCGAA 932
||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| ||
Sbjct 257 GGACCGGTTGATCAGTGCTCCTAAAGAGATAGAAGGTGGAGGTCGGGCAGCCAAAGCAAA 316
Query 933 AGATCTCTTTTACAAGACTAACGGAAGCATTCAGGACAAAGACAGTGTAGAAGATACCAA 992
||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||||||
Sbjct 317 AGATCTCTTTTACAAGACTAACGGAAGCACTCAAGATAAAGACAGTGTAGAGGATACCAA 376
Query 993 GGT 995
|||
Sbjct 377 GGT 379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 176206562990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5