BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01410.1
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939527 jgi|Araly1|939527|scaffold_600071.1 1683 0.0
> Ahg939527 jgi|Araly1|939527|scaffold_600071.1
Length=988
Score = 1683 bits (911), Expect = 0.0
Identities = 962/987 (97%), Gaps = 2/987 (0%)
Strand=Plus/Plus
Query 92 TCTCTTCAATCTCCGATAATGGAAGGAACCGGCGTTGTGGCGGTGTACGGTAACGGTGCG 151
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3 TCTCTTCAATCTCCGATAATGGAAGGAACCGGCGTTGTGGCGGTCTACGGTAACGGTGCG 62
Query 152 ATAACGGAGGCGAAGAAATCTCCCTTCTCCGTGAAGGTCGGTTTGGCTCAGATGCTCCGT 211
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 63 ATAACGGAGGCTAAGAAATCTCCCTTCTCCGTTAAGGTCGGTTTGGCTCAGATGCTCCGT 122
Query 212 GGTGGTGTTATCATGGATGTCGTCAACGCCGAGCAAGCTCGTATCGCCGAGGAGGCTGGT 271
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 123 GGTGGTGTTATCATGGATGTCGTCAACGCCGAGCAAGCTCGTATCGCCGAGGAAGCTGGT 182
Query 272 GCTTGCGCCGTCATGGCTTTGGAGCGTGTTCCTGCTGATATCCGCGCTCAAGGAGGCGTC 331
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 183 GCTTGCGCCGTCATGGCTTTGGAGCGTGTTCCTGCTGATATTCGTGCTCAAGGAGGCGTT 242
Query 332 GCTCGTATGAGCGATCCACAAATGATTAAAGAAATCAAACAAGCCGTTACGATTCCGGTG 391
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 243 GCTCGTATGAGCGATCCACAAATGATTAAAGAAATCAAACAGGCCGTTACGATTCCGGTG 302
Query 392 ATGGCTAAGGCTAGGATTGGTCATTTCGTTGAAGCTCAGATCCTTGAAGCAATTGGAATC 451
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 303 ATGGCTAAGGCTAGGATTGGTCATTTCGTTGAAGCTCAAATCCTTGAAGCAATTGGAATC 362
Query 452 GATTACATCGATGAGAGCGAGGTTTTGACTCTTGCTGATGAAGATCATCACATCAACAAG 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GATTACATCGATGAGAGCGAGGTTTTGACTCTTGCTGATGAAGATCATCACATCAACAAG 422
Query 512 CATAATTTCCGGATCCCGTTCGTTTGCGGTTGCCGGAATCTCGGCGAGGCTCTGAGGAGG 571
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 423 CATAATTTCCGGATCCCTTTCGTTTGCGGTTGCCGGAATCTCGGCGAGGCTTTGAGGAGG 482
Query 572 ATCCGTGAAGGTGCGGCGATGATTAGGACCAAAGGTGAAGCTGGAACCGGTAACATTATT 631
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 483 ATCCGTGAAGGTGCGGCGATGATAAGGACCAAAGGTGAAGCTGGAACTGGTAACATTATT 542
Query 632 GAAGCTGTGAGGCATGTGAGGTCTGTTAATGGTGACATTAGGGTTTTGCGAAACATGGAT 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 GAAGCTGTGAGGCATGTGAGGTCTGTTAATGGTGACATTAGGGTTTTGCGAAACATGGAT 602
Query 692 GATGATGAGGTTTTCACTTTCGCTAAGAAATTAGCCGCTCCGTACGATCTCGTGATGCAG 751
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 603 GATGATGAGGTTTTCACTTTCGCTAAGAAATTAGCCGCCCCGTACGATCTCGTGATGCAG 662
Query 752 ACTAAGCAGCTTGGTCGTCTTCCTGTAGTCCAATTCGCCGCCGGTGGAGTGGCTACTCCG 811
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 663 ACTAAGCAGCTTGGTCGTCTTCCTGTAGTCCAATTCGCCGCAGGTGGAGTGGCTACTCCG 722
Query 812 GCTGATGCAGCTCTCATGATGCAGCTTGGATGTGATGGTGTCTTTGTTGGTTCTGGTATC 871
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 723 GCTGATGCAGCTCTCATGATGCAGCTCGGATGTGATGGTGTCTTTGTAGGTTCTGGTATC 782
Query 872 TTCAAGAGCGGTGACCCAGCTCGTCGTGCACGTGCCATTGTTCAGGCTGTGACTCATTAC 931
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 783 TTCAAGAGCGGTGACCCAGCGCGTCGTGCACGTGCCATTGTTCAGGCTGTGACTCATTAC 842
Query 932 AGTGACCCTGAGATGCTTGTGGAGGTGAGCTGTGGGCTTGGAGAAGCCATGGTTGGGATC 991
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 843 AGTGACCCTGAGATGCTTGTGGAGGTGAGCTGTGGACTTGGAGAAGCCATGGTTGGGATC 902
Query 992 AATCTCAACGATGAGAAGGTTGAGAGGTTCGCTAATCGCTCCGAGTGATCAAAGAA-ATA 1050
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 903 AATCTCAATGATGAGAAGGTTGAGAGGTTCGCTAATCGCTCCGAGTGATCAAAGAACA-A 961
Query 1051 AAAGGTAAAATATCTCAGACGAAATGG 1077
||||||||||| | |||||| ||||||
Sbjct 962 AAAGGTAAAATTTGTCAGACTAAATGG 988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48492350424
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5