BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01420.1
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486934 jgi|Araly1|486934|fgenesh2_kg.6__68__AT5G01420.1 1877 0.0
> Ahg486934 jgi|Araly1|486934|fgenesh2_kg.6__68__AT5G01420.1
Length=1393
Score = 1877 bits (1016), Expect = 0.0
Identities = 1282/1405 (91%), Gaps = 39/1405 (3%)
Strand=Plus/Plus
Query 29 CTTTTACCCTAATTTATCTTCTTATCCCCAGCGAAGTTTTCTCGATTTTGATCTGATTGG 88
|||||||||||||||||| ||||||||||| |||| |||||||||||| ||| |||||||
Sbjct 1 CTTTTACCCTAATTTATCATCTTATCCCCAACGAACTTTTCTCGATTTCGATTTGATTGG 60
Query 89 TA------TA--GATCTCCGGTGAAGTAATACACTGGAGGGAGATGAAGTCATCGAGAAT 140
|| || ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 61 TAGTTTGGTACTGATCTCCGGTGAAGTAAAACACTGGAAGGAGATGAAGTCATCGAGAAT 120
Query 141 GAAGTTTGCAAAGAAGTTGAAATCAATTAGAGCCGGAGAATATCTGAATCAGGATCGAAT 200
||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 121 GAAGTTTGCAAAGAAATTGAAATCGATTAGAGCCGGCGAATATCTGAATCAGGATCGGAT 180
Query 201 TCTCCAGGTTCTTTCTGCTGC--A---GA----TGAGTTTCTTCCAAAGATATCTAACCA 251
|||||| |||||||||||||| | || ||||||| ||||||||||||||||||
Sbjct 181 TCTCCAAGTTCTTTCTGCTGCAGATGGGATCTCTGAGTTTTTTCCAAAGATATCTAACCC 240
Query 252 CATTCCTCAGATTACATCCGCCGCTTCTATCTGGAGAACCCCTCAAAAGTC-TGAAAATC 310
||||||||||| || | | |||||||||||||||||| |||||||||| | ||| |||
Sbjct 241 CATTCCTCAGA-TA-A-CAGCCGCTTCTATCTGGAGAGTCCCTCAAAAG-CTTGATGATC 296
Query 311 AAATTGCAAATGTAACGGAACTTTTGGAAAACGTGAGACAAGGAGAAGAAGAAG---CTT 367
||||||||||||||||||||||| ||||||||| || | ||||| |||||||| |||
Sbjct 297 AAATTGCAAATGTAACGGAACTTGTGGAAAACGAGAAAGGAGGAGGAGAAGAAGCTTCTT 356
Query 368 CTGGAAATTTTGTCGGCGACGAGGAGAACGTACGGCCTCCGGTGAATCAGATTCCGAGAG 427
|||||||| | || ||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct 357 CTGGAAATGTCGTTGGCAACGAAGAGAACGTACGGCCTCCGGTGAACCAGATTCCGAGAG 416
Query 428 TTCCGTGTGATCGGAAAGAGAGTAAACTGGCAGTTTCATGCGGATCTGATACAGG-AATC 486
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || |
Sbjct 417 TTCCGTGTGATCGGAAAGAGAGTAAACCGGCAGTTTCGTGCGGATCTGATACAGGTAA-C 475
Query 487 GGAAGAAAGAGTTTCGGATCTGGATTTAGAAGACCTGATTTGAATTCGACCACACTTTTC 546
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 476 GGAAGGAAGAGTTTCGGATCTGGATTTAGAAGACCTGATTTGAATTCAACCACACTTTTC 535
Query 547 GATCCGAAACTGTTAGAAGCATTTGAATTAGCTGCGTTATGCTTTAGGAAGATTAAGGAT 606
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 536 GATCCGAAGCTGTTAGAAGCATTTGAATTAGCTGCGTTATGCTTTAGGAAGATTGACGAT 595
Query 607 TTTTCCAGAGAAGCCAGAGTCAATGATGAAGACGACATCGTCTTTCCCGAGGAAGAGGAA 666
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TTCTCCAGAGAAGCCAGAGTCAATGATGAAGACGACATCGTCTTTCCCGAGGAAGAGGAA 655
Query 667 ATCAGAAAAGACGGGAATAGCATTCCTCCGGTGATTAGCGTC---GTAGAGTATAGACGG 723
||| ||||||||| ||||| | |||| ||||||||| || || | |||| ||||||||
Sbjct 656 ATCGGAAAAGACGAGAATACCCTTCCCCCGGTGATTGGCCTCGAAGAAGAGGATAGACGG 715
Query 724 AAAGACGAAAATGTCGTCGTTCTTCACAAAGATGATGGAAATGCCCTTCAGATTGTAAAT 783
||||| ||||| ||| |||| |||||||||||||||||||||| ||||||||| | |||
Sbjct 716 AAAGATGAAAACGTCTTCGTCCTTCACAAAGATGATGGAAATGTCCTTCAGATAGCAAAC 775
Query 784 GCGATCAG-GGAAGAAGTCATCGGAGAAGAAGACATTGGAAAAGACGGAAATACCCTTAT 842
|| | | | |||||||||||||||||||||||||| |||| ||||||||| |||||||||
Sbjct 776 GCCA-CCGCGGAAGAAGTCATCGGAGAAGAAGACAATGGAGAAGACGGAAGTACCCTTAT 834
Query 843 GGATCCGTTGTTGGAATTCGAGGAACGGTGTCCTCCGGGAGGAGAGGAATCCGTTGTTTT 902
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CGATCCGTTGTTGGAATTCGAGGAACGGTGTCCTCCGGGAGGAGAGGAATCCGTTGTTTT 894
Query 903 CTACACAACGACTCTTCGAGGAATCAGAAAAACGTTCGACGATTGCAACATGATCCGATT 962
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 895 CTACACAACGACTCTTCGGGGAATCAGAAAAACGTTCGACGACTGCAACATGATCCGATT 954
Query 963 TCTGCTGGATAGTTTTAAGGTTAAGTACTACGAGAGAGATGTGTCGATGCATAGAGAGTA 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TCTGCTGGATAGTTTTAAGGTTAAGTACTACGAGAGAGATGTGTCGATGCATAGAGAGTA 1014
Query 1023 TAGAGAAGAGCTCCGACGAATCTCAGCGGCGGAAACAGAGGTGTTGCCTCCGGTTCTGTT 1082
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 1015 TAGAGAAGAGCTCCGACGAATCTCAGCGGCGGAAACGGATGTTTTGCCTCCGGTTCTGTT 1074
Query 1083 CGTAAAAGGAAGGTGTATCGGTGGAGCTCAGAGAGTGTTGGGACTGCACGAGCAAGGGAA 1142
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1075 CATAAAAGGAAGGTGTATCGGTGGAGCTCAGAGAGTGTTGGGTCTGCACGAGCAAGGGAA 1134
Query 1143 GTTTA-AGATTCTCTTTGAGGGCATTCCAATCACCGGAGATGAACGTTGCCGGCGGTGCG 1201
||||| || |||| ||||| ||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1135 GTTTAGAG-TTCTGTTTGACGGCGTTCCAATCACCGGAGATGAACGTTGCCGGCGATGCG 1193
Query 1202 ATGGTTTTAGGTTTTTGATGTGTGATGGATGCAGAGGTAGTCGCCGGATTATCTCTGGTG 1261
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1194 ATGGGTTTAGGTTTTTGATGTGTGATGGATGCAGAGGTAGTCGCCGGATTATCTCCGGTG 1253
Query 1262 ATGGATCAAGAATTCAGTGTTTGATATGTAATGAGAATGGGTTAATTGTGTGCGTTGGTT 1321
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1254 ATGGATCAAGGATTCAGTGTTTGATATGTAATGAGAATGGGTTAATTGTGTGCGTTGATT 1313
Query 1322 GCTCCTAATACCAttttttttGTTTGGTCTATATATATCAAATTACATTATTCGTTTATT 1381
|||||||| | |||||||| ||| || | |||||| ||||||||| ||||||||||||
Sbjct 1314 GCTCCTAAGATCATTTTTTATGTGTG-T--ATATAT--CAAATTACACTATTCGTTTATT 1368
Query 1382 ATTTTTCTTAGTATTGTAACGAttt 1406
|||||||||||| |||||||||||
Sbjct 1369 ATTTTTCTTAGTGCTGTAACGATTT 1393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5