BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01430.1
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486933 jgi|Araly1|486933|fgenesh2_kg.6__67__AT5G01430.1 1225 0.0
> Ahg486933 jgi|Araly1|486933|fgenesh2_kg.6__67__AT5G01430.1
Length=855
Score = 1225 bits (663), Expect = 0.0
Identities = 811/876 (93%), Gaps = 35/876 (4%)
Strand=Plus/Plus
Query 118 CTTCGAGGAGCCTGCGTGCTAGGGTTTCTCCGCCTTCTTCCTTCCCTTATTTTAGATCTC 177
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 2 CTTCGAGGAGCCTGCGTGCTAGGGTTTCTCCGCCTTCTTCCTTCCCTAATTCTAGATCTC 61
Query 178 AAAAGGTAGAAGCAGCTCATTACAGGAACCATGATGTCCTTTGAAATGAATGACCGGaaa 237
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 AAAAGGTAGAAGCAGCTGATTACAGGAACCATGATGTCCTTTGAAATGAATGACCGGAAA 121
Query 238 aaaaTCGGGTTAGGCCTGACAGGATTTGGCGTATTCTTCTCGTTTTTGGGAATAGTCTTT 297
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 122 AAAATCGGGTTAGGGCTGACAGGATTTGGCGTATTCTTCTCGTTTTTGGGAATTGTCTTT 181
Query 298 GTCTTTGATAAGGGATTACTTGCCATGGGAAATATTCTTTTCATCTCGGGGGTTAGTCTA 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GTCTTTGATAAGGGATTACTTGCCATGGGAAATATTCTTTTCATCTCGGGGGTTAGTCTA 241
Query 358 ACCATTGGCTTCAAGTCTACCATGCAGTTCTTCATGAAGCGTCAAAATTATAAGGGAACC 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 ACCATTGGCTTCAAGTCTACCATGCAGTTCTTCATGAAGCGTCAAAATTATAAGGGAACC 301
Query 418 ATCTCTTTTGGCGTCGGTTTCTTCTTTGTTATCATCGGGTGGCCTATCTTGGGAATGATG 477
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 ATATCTTTTGGCGTCGGTTTCTTCTTTGTTATCATCGGGTGGCCTATCTTGGGAATGATG 361
Query 478 TTGGAGACCTATGGCTTTTTCGTACTCTTCAGTGGCTTCTGGCCTACCTTGGCAGTCTTT 537
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 362 TTGGAGACCTATGGCTTTTTCGTACTCTTCAGTGGCTTCTGGCCAACCTTGGCAGTTTTT 421
Query 538 GCTCAGAAGATACCCGTTCTCGGTTGGATTATTCAGCAACCATATATTAGATCGTTCTTT 597
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 422 GCTCAGAAGATACCCATTCTCGGTTGGATCATTCAGCAACCATATATTAGATCGTTCTTT 481
Query 598 GACAAGTACCGGGGCAAGCGTGTGCCGGTCTAGTCTTCCATCCCGAGTAGAGAGACGATT 657
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 482 GACAAGTACCGGGGCAAGCGTGTTCCGGTCTAGTCTTCCAGCCCGAGTAGAGAGACGATT 541
Query 658 CACTGAGCTAGATGCAGCTGAACAGGCGATTAAAGTTTTT--GGAAGAAGAAGTTGGTGA 715
||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 542 CACTGAGCTAGATGCAGCTGAACAGACGATTAAATTTTTTTTGGAAGAAGAAGTTGGTGT 601
Query 716 -CT-----C--CTGTAGAAAACTAAAACCATAGGAGAAAGAAAATAGGAAGGAAAAGAAC 767
|| | |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 602 GCTTGTGACTTCTGTAGAAAACTAAAACCATAGGAGAAAGAAAATAGGAAGGAGCGGAAC 661
Query 768 GTACAATTTGAAGCTGTGTGT-CTATGTACTTGAGAGAAAAACTCAGTGACTTAATGCTC 826
|||| |||||||||||||||| |||||||||| |||||||| ||||||||||| | |
Sbjct 662 GTACGATTTGAAGCTGTGTGTTCTATGTACTTAAGAGAAAA-CTCAGTGACTT---G-T- 715
Query 827 TTTGATGGAGTTTGTAAACGTTTTGGTTGTTTAACTCTGACAAATCGGTTAGCCAAATCT 886
|| | | | || |||||||||| ||||||| |||||||||| || |||||||||
Sbjct 716 TT-G-T--A------AA-CGTTTTGGTTTTTTAACTTTGACAAATCGTTTGGCCAAATCT 764
Query 887 TG-TTTTGGCAATACGTCGTCGCTTGCTTTTTGCATACATATAAAAATTGATTAGCGGTT 945
| |||| ||||||||||| | ||| |||| |||||||||||||| |||||||||||||
Sbjct 765 -GATTTTAGCAATACGTCG-CTTTTGGTTTT-GCATACATATAAAA-TTGATTAGCGGTT 820
Query 946 CCGGTTTAATGTGTAAT-TCAAATGTGGTTCGGTTT 980
||||||||||||||||| | || || ||||||||||
Sbjct 821 CCGGTTTAATGTGTAATATTAA-TGGGGTTCGGTTT 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36407385735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5