BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G01445.1

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939520 jgi|Araly1|939520|scaffold_600064.1                        283    8e-76


> Ahg939520 jgi|Araly1|939520|scaffold_600064.1
Length=320

 Score =  283 bits (153),  Expect = 8e-76
 Identities = 266/315 (84%), Gaps = 29/315 (9%)
 Strand=Plus/Plus

Query  40   GGCACGGAGAGC---AATAATGGGTAGAATTTAT-GCCCATCACGCATACAGAG-C-CTC  93
            ||||||||||||   ||||||||||||||||| | ||| ||| ||||||||||| | |||
Sbjct  3    GGCACGGAGAGCAATAATAATGGGTAGAATTTTTCGCCAATC-CGCATACAGAGCCTCTC  61

Query  94   TT-----TT-TG---C-TCTCAAATTCATATCTGCGTTTCCAGACTTCAAGTGCG-AAGT  142
            ||     || ||   |  ||||||||| || |||||||| |||||||| |||| | ||||
Sbjct  62   TTGCAGATTATGATCCACCTCAAATTCGTAGCTGCGTTTTCAGACTTCCAGTG-GAAAGT  120

Query  143  TATACTACAAATCCGCGTTTCGCCCGCCGCTATGATTTTGAGGAAAAGTTGTCGCCTGAT  202
            |||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  121  TATATTACACATCCGCGTTTCCCCCGCCGCTATGATTTTGAGGAAAAGTTGTCGCCTGAT  180

Query  203  GTTACTGAGTCACAGGAAAAGTTGTTGTCACCTGATGTTAGTGACTCTTCGACAAGCG-T  261
            ||||||||||| ||||||||||||| | | | ||||||||| || || |||||||||  |
Sbjct  181  GTTACTGAGTCGCAGGAAAAGTTGTCG-C-C-TGATGTTAGAGAGTCGTCGACAAGCAAT  237

Query  262  --AGCTAAGCAGTTTCAATCAAGTTCAAAGATGCGATTCCTCCAC-AAGCACAAAGCTTT  318
              || ||||||| ||||||||||||| ||||||||||||||| || |||| |||||||||
Sbjct  238  TTAGGTAAGCAGCTTCAATCAAGTTCCAAGATGCGATTCCTC-ACCAAGCGCAAAGCTTT  296

Query  319  T-AAAATgaagaaga  332
            | |||| ||||||||
Sbjct  297  TTAAAA-GAAGAAGA  310



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19421194801


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5