BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01450.1
Length=1904
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486932 jgi|Araly1|486932|fgenesh2_kg.6__66__AT5G01450.1 2739 0.0
> Ahg486932 jgi|Araly1|486932|fgenesh2_kg.6__66__AT5G01450.1
Length=1924
Score = 2739 bits (1483), Expect = 0.0
Identities = 1804/1947 (93%), Gaps = 70/1947 (4%)
Strand=Plus/Plus
Query 3 AAATGTTTTACTTTTTCCAAAGTCG------TC-GTCTCTCTCCAAGTTTTGTGAATCCA 55
||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1 AAATGTTTTACTTTTTCCAAAGTCGTCTCTCTCTCTCTCTCTCCAAGTTTTGTGAATCCA 60
Query 56 CCGTTCAACGTGACGATGAAGAAAGAGAAGAAGCCGACCCGTCGTTCAAA------TCAT 109
||||||||||||||||||||| || || |||| ||||||||||||||| ||||
Sbjct 61 CCGTTCAACGTGACGATGAAG-AA-AG-AGAA---GACCCGTCGTTCAAATCTCTGTCAT 114
Query 110 C--C-TTCGTTCCTCAACAACATTAACCCCAAACCTAAGGTTAGGGTTTTACCTTTATCT 166
| | ||||||||| |||| |||||||||||||||| ||||||||||||||| || | |
Sbjct 115 CATCGTTCGTTCCTTAACAGCATTAACCCCAAACCTGCGGTTAGGGTTTTACC-TT-T-T 171
Query 167 CTTCAATTTCTTCATTCCTCTCATCGATTCGCGACAACATGTCTCTACCGGATTCTCTCC 226
|||| | | ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 172 CTTC-A-------A-TCCTCTCATCGATTCGCGACATCATGTCTCTACCGGATTCTCTCG 222
Query 227 CATCTTCTTCTTCTTCTCCGCCTGTGACCCGTGAAGAAACCGGCTTTCATCGCTTTGAAC 286
| |||||||||||||||||||||||| |||||||||||||||| | | ||||||||||||
Sbjct 223 CGTCTTCTTCTTCTTCTCCGCCTGTGGCCCGTGAAGAAACCGGGTATAATCGCTTTGAAC 282
Query 287 ATCACGGCAACGATTCCGGTTTTGATCATCGTGATCGTCCACCGTGGAATCGTTCTGAGT 346
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 283 ATCACGGCCACGATTCCGGTTTTGATCATCGTGATCGTCCACCATGGAATCGTTCTGATT 342
Query 347 ACGATTATCGCCATGGAAGCGTTGTTGCATCTGAGAACGTCAGGAACAATTCCACTTCTG 406
||||||| |||||||||||| ||||||||||||||||||| ||||||||||| ||||| |
Sbjct 343 ACGATTACCGCCATGGAAGCATTGTTGCATCTGAGAACGTGAGGAACAATTCGACTTCGG 402
Query 407 AAGACCCTTGGTCTTGCGTTGTCGTCGTTGCTACCTTCTGTATCTTTGTGTCGATGACTT 466
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 403 AAGACCCTTGGTCTTGCGTTGTCGTCGTTGCTACCTTCTGTATCTTCGTGTCGATGACTT 462
Query 467 TGATTCTGGGGCTTTATGGAACAACGAATGTCTGGTTGGGACCAAACTCTTCGTTTCTTA 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 TGATTCTGGGGCTTTATGGAACAACGAATGTCTGGTTGGGACCAAACTCTTCGTTTCTTA 522
Query 527 TTAAGCCAACTTCAGTGTTCGTCCAAAATGTCATTGTGGAAGAATTAGGGAACAAGGGAT 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 TTAAGCCAACTTCAGTGTTCGTCCAAAATGTCATTGTGGAAGAATTAGGGAACAAGGGAT 582
Query 587 CTGGTTTGATACTGTATGGATTGAACCAAGCCCCACAGCTTGATGTTCTGACTAAATGGT 646
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 CTGGTTTGATTCTGTATGGATTGAACCAAGCCCCACAGCTTGATGTTCTGACTAAATGGT 642
Query 647 CCGAAGTTCACTATCTAGCTGTGCCTAATGATTCTTACAAGTATTGGATACAGTATTTGA 706
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 643 CTGAAGTTCACTATCTAGCTGTGCCAAATGATTCTTACAAGTATTGGATACAGTATTTGA 702
Query 707 ACAAGGGGTCACGCGTAAAAGTTTCATACAACGTTGAATCTGTGGGTTCTTCCTTATACC 766
||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 703 ACAAGGGGTCACGCGTAAAAGTTTCATACAACGTTGAATCTGTGGGTTCTTCCCTCTATC 762
Query 767 TTGTGATAGCCCAAGGTGTGGATGGGCTCTCTGAGTGGGTACAAGATCCGACGCGTCCAG 826
||||| |||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 763 TTGTGGTAGCCCAAGGTGTGGATGGGCTCTCTGAGTGGGTACAAGACCCTACCCGTCCAG 822
Query 827 ACACTACACTGTCGTGGCATATAATCTCTGATAGTGGTTATATTGAGCAGGACATAACTA 886
||||||||||||| ||||| |||||||||| | |||||| ||||||| |||||||||||
Sbjct 823 ACACTACACTGTCATGGCACATAATCTCTGGCAATGGTTACATTGAGCTGGACATAACTA 882
Query 887 AGTCGTCGAGTTATTATGTTGCAGTAGGCAACGTATACCTGAATGAAGTGAAGGCGACGA 946
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 883 AGTCGTCGAGTTATTACGTTGCAGTAGGCAACGCATACCTGAATGAAGTGAAGGCTACGA 942
Query 947 TTGACATTCAAGTTGAGGGGGTATTGTATGATACTACAAATGCTTATTACAATTGCTCTT 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 TTGACATTCAAGTTGAGGGGGTATTGTATGATACTACAAATGCTTATTACAATTGCTCTT 1002
Query 1007 TCCCTAACGACAAGTGCACTCTAAGTGTTCCATTATTTGGAACTAATGCTGCTGTACTAA 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 TCCCTAACGACAAGTGCACTCTAAGTGTTCCATTATTTGGAACTAATGCTGCTGTACTAA 1062
Query 1067 CCTCACCAGGTCCAAAGCTGAACAATTCTAAGAATGAGTTCTGCGCAAAACTCTCATATG 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 CCTCACCAGGTCCAAAGCTGAACAATTCTAAGAATGAGTTCTGCGCAAAACTCTCATATG 1122
Query 1127 AACCAAGGTGGATTGCATACATAGTTTGCATGGGTGTAGTGACAGCACTCTTGTTAATTG 1186
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1123 AACCAAGGTGGATTGCATACATAGTTTGCATGGGTGTTGTGACAGCACTCTTGTTAATTG 1182
Query 1187 TCTCGAGTCTCTTCAATAAACGACAACCAGTCACTGAAGATGAAACCGTTGATGAAAATG 1246
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 TCTCTAGTCTCTTCAATAAACGACAACCAGTCACTGAAGATGAAACCGTTGATGAAAATG 1242
Query 1247 ATGATGTAGCTCCTCTAATTCCGGGAAAAGACGATGATAACTCAAGCTGGTGCTCGTCCT 1306
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 ATGATGTAGCTCCTTTAATTCCGGGAAAAGACGATGATAACTCAAGCTGGTGCTCGTCCT 1302
Query 1307 ACAGTTCTATTTTGACGAGTACAGAGGAATTGGAAGGTGCACATGGTGAAGGCCACAGTA 1366
|||||||||| ||||| ||||| |||||||||||||| | ||||||||||||||||||||
Sbjct 1303 ACAGTTCTATCTTGACAAGTACTGAGGAATTGGAAGGCGGACATGGTGAAGGCCACAGTA 1362
Query 1367 GTACAAGATATCTATGTGCAATTTGCTATGATGCGCCTAGAGACTGTTTCTTCCTCTCTT 1426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 GTACAAGATATCTATGTGCAATTTGCTATGATGCGCCTAGAGACTGTTTCTTCCTCTCTT 1422
Query 1427 GTGGACACTGCGTTGCTTGCTTCCAGTGCGGGACACGGATAGCTGAAACTTCGGGTTTTT 1486
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1423 GTGGACACTGCGTTGCTTGCTTACAGTGCGGGACACGGATAGCTGAAACTTCGGGTTTTT 1482
Query 1487 GTCCGGTATGCCGTAAGAAGATCAGGAAGGTCAAGAAGATCTTCAATGTCTAACAGAGAG 1546
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1483 GTCCGGTATGCCGTAAGAAGATCAGGAAGGTAAAGAAGATCTTCAATGTCTAACAAAGAG 1542
Query 1547 AATGAATAACACACAATGCAACGTTGCTT-GCTGTTTCTGTTTCCTCGCATTACCATATC 1605
||||||| ||||||| ||||||||||||| |||||| |||||||||||||||||| ||||
Sbjct 1543 AATGAATGACACACAGTGCAACGTTGCTTTGCTGTT-CTGTTTCCTCGCATTACCGTATC 1601
Query 1606 CGTTGTATAAATGTAAAAGACAAGTGTGGGACGGAGAAAAGCAAGA-A-GGTTCTGGCGT 1663
|||||||| ||||||||||||||||||||| |||||||||||| | | ||| | ||||
Sbjct 1602 TGTTGTATAGATGTAAAAGACAAGTGTGGGATGGAGAAAAGCAAAACAAGGTGATTGCGT 1661
Query 1664 CTGTGTTACTGCTGTCTGTATATGAAATGATATGG-ATTCCGGAGTTTCCGCTTCGTTGT 1722
|| |||||||| | |||||||||||||||| ||| ||||||||||||| |||| |||||
Sbjct 1662 CTATGTTACTG-T--CTGTATATGAAATGATGTGGGATTCCGGAGTTTCGGCTTGGTTGT 1718
Query 1723 ACTTGTAACCATATTTCATTGAACCCGGTT-----GAAATTTTATTTTTCCGATTCGATA 1777
|||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct 1719 ACTTGTAACCATATTTCATTGAACCCGGTTCATCCGAAATTTTATTATTCCGATACGATA 1778
Query 1778 ACT-GT---TT-AGCGTCTGGTTTGCAGCGTAATTTCTTGTTTGTGTAACAACA-A-A-- 1828
||| || || ||||| |||||||||||||||||||| ||||| | ||||||| | |
Sbjct 1779 ACTTGTCAGTTTAGCGTTTGGTTTGCAGCGTAATTTCTGGTTTGGGCAACAACATATAAG 1838
Query 1829 TATGTCTGACCATGTAT--A--GAACTTGCGAATTTTCACG-T-TT-T-T----AATCAT 1876
||||||||||||||||| | |||||||| |||||||||| | || | | ||||||
Sbjct 1839 TATGTCTGACCATGTATGTATAGAACTTGCCAATTTTCACGCTGTTGTATTTTTAATCAT 1898
Query 1877 TTTCTGAAA-TTTTCCAATATTCATTC 1902
||||||||| ||||| |||||||||||
Sbjct 1899 TTTCTGAAAATTTTC-AATATTCATTC 1924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71533480110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5