BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01460.1
Length=2108
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939518 jgi|Araly1|939518|scaffold_600062.1 2937 0.0
Ahg478196 jgi|Araly1|478196|fgenesh2_kg.3__897__AT3G08930.1 1947 0.0
> Ahg939518 jgi|Araly1|939518|scaffold_600062.1
Length=1674
Score = 2937 bits (1590), Expect = 0.0
Identities = 1644/1671 (98%), Gaps = 0/1671 (0%)
Strand=Plus/Plus
Query 113 CTCGTACATTGCACGCGATGGGAGATTTCAATCTCGCTCTCGTGATTGTTGCGATCGTAG 172
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 4 CTCGTACATTGCACGCGATGGGGGATTTCAATCTCGCTCTCGTGATTGTTGCGATCGTAG 63
Query 173 TTTGCGTCATTGTTTTCATCTCCAGTATCTACCTCCTCGTCAACTATCAGCATCCAGATG 232
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 TTTGCGTAATTGTTTTCATCTCCAGTATCTACCTCCTCGTCAACTATCAGCATCCAGATG 123
Query 233 ATGCAAACCAGGCTTATTTCCCCAAATTCGTTGTTGTTTTTGGTTTATCCATTGCTATGA 292
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 124 ATGCGAACCAGGCTTATTTCCCCAAATTCGTTGTTGTTTTTGGTTTATCGATTGCTATGA 183
Query 293 TCTCTATTCTCATGTTACCGGCGGATGTGGCTAACCGGCATGCTTGTCGACATTCGATTT 352
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 184 TCTCCATTCTCATGTTACCGGCGGATGTGGCAAACCGGCATGCTTGTCGACATTCGATTT 243
Query 353 ACAACGGCGCTTGTAATCTCACCTTACCTATGAAGGATCTTTGGCTTGCCGTTTACATTG 412
| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 244 ATAATGGCGCTTGTAATCTCACCTTACCTATGAAGGAGCTTTGGCTTGCCGTTTACATTG 303
Query 413 TTGACGCTGTGCTTGTCTTCTTCATCATCCCCTTCGCTATGTTTTTCTATGAAGGCGACC 472
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TCGACGCTGTGCTTGTATTCTTCATCATCCCCTTCGCTATGTTTTTCTATGAAGGCGACC 363
Query 473 AGGACAAGGCTCTTGGGAAGAGGATAAAGAGTGCTTTGATTTGGGTGGTTACTACAGCTG 532
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 364 AGGACAAGGCTCTTGGGAAGAGGATAAAAAGTGCTTTGATTTGGGTGGTTACTACAGCTG 423
Query 533 TTGTTTGTGCTCTGGTTCTTGGAATTTTATACGGAGTCATTGGGAAGGTGGACTTCTCTG 592
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 424 TTGTTTGTGCTCTGGTGCTTGGAATTTTATACGGAGTCATTGGAAAGGTGGACTTCTCTG 483
Query 593 TAAGGCACTTGTCTTCTGCCACGACTACTTTCCCTACTTCATGGCAGTTTTCAAATAATC 652
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 484 TAAGGCACTTATCTTCTGCCACGACGACTTTCCCTACTTCATGGCAGTTTTCAAATAATC 543
Query 653 AACCTTGCATTGGTAACACTGCTCGTCAGTGCTCAGCATATACAGCTAATGCTGCGTCTG 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 AACCTTGCATTGGTAACACTGCTCGTCAGTGCTCAGCATATACAGCTAATGCTGCGTCTG 603
Query 713 AAAAGACATGGTCCATGCGTACTACGTTTCCAGAATATGTTGTTGCTCTTGCTACAATCG 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 AAAAGACATGGTCCATGCGTACTACGTTTCCAGAATATGTTGTTGCTCTTGCTACAATCG 663
Query 773 TTGGGTCAGTGCTCTTCACGATATTTGGTGGTGTTGGTATTGCTTGCCTACCCTTGGGCC 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TTGGGTCAGTGCTCTTCACGATATTTGGTGGTGTTGGTATTGCTTGCCTACCCTTGGGCC 723
Query 833 TTATCACTGCATTCATCAGGCGACCAAAGGCTGTTATCACTCGGTCACAGTATATAAAGG 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 TTATCACTGCATTCATCAGGCGACCAAAGGCTGTTATCACTCGGTCACAGTATATAAAGG 783
Query 893 AAGCAACTGAACTAGGTAAAAAGGCAAGAGATCTAAAGAAAGCAGCTGATGCACTTCACC 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 AAGCAACTGAACTAGGTAAAAAGGCAAGAGATCTAAAGAAAGCAGCTGATGCACTTCACC 843
Query 953 AGGAAGAACGAAGTGGTGCTAAGGGAAGGAAGTGGAGGAAAAATGTGAAAGCAGTTGAAA 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 AGGAAGAACGAAGTGGTGCTAAGGGAAGGAAGTGGAGGAAAAATGTGAAAGCAGTTGAAA 903
Query 1013 AGGAGTTGCTCCAATTGGAAGAAGATGTGAACCTCTTAGAAGAGATGTATCCGCAAGGAG 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 AGGAGTTGCTCCAATTGGAAGAAGATGTGAACCTCTTAGAAGAGATGTATCCGCAAGGAG 963
Query 1073 AGCAGGCAGAGACTGCTTGGGCCTTCACTGTCCTGGGATACTTGGCCAAGTTTGTTCTTG 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 964 AGCAGGCAGAGACTGCTTGGGCCTTCACTGTCCTGGGATACTTGGCCAAGTTTATTCTTG 1023
Query 1133 GAATCTTAGGATTAATTGTTTCTGTGGCTTGGATTGCTCACATCATCATATATCTACTTG 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 GAATCTTAGGATTAATTGTTTCTGTGGCTTGGATTGCTCACATCATCATATATCTACTTG 1083
Query 1193 TTGACCCTCCCCTCTCTCCTTTTCTGAATGAAGTTTTCATCAAACTGGATGACGTCTGGG 1252
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1084 TTGACCCTCCCCTCTCTCCTTTTCTTAATGAAGTTTTCATCAAACTGGATGACGTCTGGG 1143
Query 1253 GTCTTCTTGGCACAGCTGCCTTTGCTTTCTTCTGTTTCTATCTCCTACTTGCTGTTATTG 1312
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 GTCTTCTGGGCACAGCTGCCTTTGCTTTCTTCTGTTTCTATCTCCTACTTGCTGTTATTG 1203
Query 1313 CTGGGGCAATGATGCTTGGTTTGAAGCTGGTCTTCATTACCATTCATCCAATGAAATGGG 1372
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1204 CTGGGGCAATGATGCTTGGTTTGAAGCTGGTCTTCATTACCATTCATCCTATGAAATGGG 1263
Query 1373 GAGCCACTCTTATGAACTCTTTTCTCTTTAATGTCGGTCTCATTCTCCTCTGTTCTATCA 1432
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1264 GAGCCACTCTTATGAACTCTTTTCTCTTCAATGTCGGTCTCATTCTCCTCTGTTCTATCA 1323
Query 1433 GTGTGATTCAATTCTGCGCCACTGCATTTGGATATTATGCTCAAGCCACCGCCGCTCAGG 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 GTGTGATTCAATTCTGCGCCACTGCATTTGGATATTATGCTCAAGCCACCGCCGCTCAGG 1383
Query 1493 AGATATTTGGCCACACTTTGCAGTCCCTTCGCGGTATTAAGTACCTCTACAAGTACAATG 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 AGATATTTGGCCACACTTTGCAGTCCCTTCGCGGTATTAAGTACCTCTACAAGTACAATG 1443
Query 1553 TGTTCCAGATCGGGTTTGTTGTCCTCGCTGGATTGACCTTTTTATATTACATTGCCTTTG 1612
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1444 TGTTCCAGATCGGGTTTGTTGTCCTCGCTGGACTGACCTTTTTATATTACATAGCCTTTG 1503
Query 1613 GATGGAGAAGAAAAAAGCCGAGCGGCAGATTCCAGCTCTCTACCTAATGTAAATCTCTTC 1672
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1504 GATGGAGAAGAAAAAAGCCGAGCGGTAGATTCCAGCTCTCTACCTAATGTAAATCTCTTC 1563
Query 1673 TTTTGATTTTATCGTTTATGTTTCCTCGTCTCTGGGATCGATCGCGTGCCACTGAGGATT 1732
||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1564 TTTTGATTTTATCCTTTTTGTTTCCTCGTCTTTGGGATCGATCGCGTGCCACTGAGGATT 1623
Query 1733 GCTGTGTCCACAATTATACCGAGATTGGTCTCATGATCTGTGCAAGTGGTC 1783
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 GCTGTGTCCACAATTATACCGAGATTGGTCTCATGATCTGTGCAAGTGGTC 1674
> Ahg478196 jgi|Araly1|478196|fgenesh2_kg.3__897__AT3G08930.1
Length=1845
Score = 1947 bits (1054), Expect = 0.0
Identities = 1395/1563 (89%), Gaps = 10/1563 (1%)
Strand=Plus/Plus
Query 108 GGGATCTCGTACATTGCACGCGATGGGAGATTTCAATCTCGCTCTCGTGATTGTTGCGAT 167
|||| || ||||||||| | ||||||| |||||||| ||||||||||||||||| |||||
Sbjct 58 GGGACCTTGTACATTGCGCACGATGGGCGATTTCAACCTCGCTCTCGTGATTGTCGCGAT 117
Query 168 CGTAGTTTGCGTCATTGTTTTCATCTCCAGTATCTACCTCCTCGTCAACTATCAGCATCC 227
||| ||||||||||| ||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct 118 CGTTGTTTGCGTCATCGTTTTCATCTCTAGCATCTATCTCCTCGTCAACTACCAGCATCC 177
Query 228 AGATGATGCAAACCAGGCTTATTTCCCCAAATTCGTTGTTGTTTTTGGTTTATCCATTGC 287
|||||||||||||||||||||||||||||||||||| ||||||||||| | || |||||
Sbjct 178 AGATGATGCAAACCAGGCTTATTTCCCCAAATTCGTCGTTGTTTTTGGGCTGTCTATTGC 237
Query 288 TATGATCTCTATTCTCATGTTACCGGCGGATGTGGCTAACCGGCATGCTTGTCGACATTC 347
||||||||| |||||||||||||||||||||||||| || |||||||||||||||||| |
Sbjct 238 TATGATCTCGATTCTCATGTTACCGGCGGATGTGGCCAATCGGCATGCTTGTCGACATGC 297
Query 348 GATTTACAACGGCGCTTGTAATCTCACCTTACCTATGAAGGATCTTTGGCTTGCCGTTTA 407
|| ||||| || ||||| ||||||||||| || |||||||||||||||||||| ||||
Sbjct 298 TATATACAATGGAGCTTGCAATCTCACCTTGCCCATGAAGGATCTTTGGCTTGCTATTTA 357
Query 408 CATTGTTGACGCTGTGCTTGTCTTCTTCATCATCCCCTTCGCTATGTTTTTCTATGAAGG 467
|| || |||||| | || || ||||| ||||||| ||||| |||||||||||||| ||
Sbjct 358 TATCGTGGACGCTATTCTCGTGTTCTTTGTCATCCCATTCGCAATGTTTTTCTATGAGGG 417
Query 468 CGACCAGGACAAGGCTCTTGGGAAGAGGATAAAGAGTGCTTTGATTTGGGTGGTTACTAC 527
||||||||||||| ||||||| ||||||||||| ||||| || ||||||||||| || ||
Sbjct 418 CGACCAGGACAAGACTCTTGGAAAGAGGATAAAAAGTGCCTTAATTTGGGTGGTAACCAC 477
Query 528 AGCTGTTGTTTGTGCTCTGGTTCTTGGAATTTTATACGGAGTCATTGGGAAGGTGGACTT 587
|||||||||||||||||||| |||||||||||||| || |||||||| |||||||||||
Sbjct 478 GGCTGTTGTTTGTGCTCTGGTGCTTGGAATTTTATATGGTGTCATTGGAAAGGTGGACTT 537
Query 588 CTCTGTAAGGCACTTGTCTTCTGCCACGACTACTTTCCCTACTTCATGGCAGTTTTCAAA 647
|||||| ||||||||| |||||||||| | |||||||||||||| ||||| ||||||||
Sbjct 538 CTCTGTCAGGCACTTGGCTTCTGCCACTTCCACTTTCCCTACTTCCTGGCAATTTTCAAA 597
Query 648 TAATCAACCTTGCATTGGTAACACTGCTCGTCAGTGCTCAGCATATACAGCTAATGCTGC 707
|| |||||| ||||| |||||||| ||||| ||||||||||||| |||||| ||| | |
Sbjct 598 TACTCAACCATGCATCGGTAACACCGCTCGCCAGTGCTCAGCATTTACAGCCAATCCCAC 657
Query 708 GTCTGA-AAAGACATGGTCCATGCGTACTACGTTTCCAGAATATGTTGTTGCTCTTGCTA 766
||||| ||| |||||| ||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 658 ATCTGAGAAA-ACATGGACCATGCGTACTACTTTTCCAGAGTATGTTGTTGCTCTTGCGA 716
Query 767 CAATCGTTGGGTCAGTGCTCTTCACGATATTTGGTGGTGTTGGTATTGCTTGCCTACCCT 826
|||| ||||||||||| || ||||||||||||||||||||||||||||| || ||| |||
Sbjct 717 CAATTGTTGGGTCAGTTCTTTTCACGATATTTGGTGGTGTTGGTATTGCATGTCTA-CCT 775
Query 827 -TGGGCCTTATCACTGCATTCATCAGGCGACCAAAGGCTGTTATCACTCGGTCACAGTAT 885
|||| ||||||||||||||||||||||| |||||||||||||||||| | ||||| |||
Sbjct 776 CTGGGACTTATCACTGCATTCATCAGGCGGCCAAAGGCTGTTATCACTAGATCACAATAT 835
Query 886 ATAAAGGAAGCAACTGAACTAGGTAAAAAGGCAAGAGATCTAAAGAAAGCAGCTGATGCA 945
|||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 836 ATAAAGGAGGCAACCGAACTAGGTAAAAAGGCAAGAGAACTAAAGAAAGCAGCTGATGGA 895
Query 946 CTTCACCAGGAAGA-ACGAAGTGGTGCTAAGGGAAGGAAGTGGAGGAAAAATGTGAAAGC 1004
||||| |||||||| | |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 896 CTTCATCAGGAAGAGA-GAAGTGGTGCTAAGGGCAGGAAGTGGAGGAAAAATGTGAAAGC 954
Query 1005 AGTTGAAAAGGAGTTGCTCCAATTGGAAGAAGATGTGAACCTCTTAGAAGAGATGTATCC 1064
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 955 AGTTGAAAAGGAGTTGCTCCAATTGGAGGAAGATGTGAACCTCTTAGAAGAGATGTATCC 1014
Query 1065 GCAAGGAGAGCAGGCAGAGACTGCTTGGGCCTTCACTGTCCTGGGATACTTGGCCAAGTT 1124
||||||||||||||||| ||||| ||||| |||||||| || |||||||||||||||||
Sbjct 1015 TCAAGGAGAGCAGGCAGAAACTGCATGGGCTTTCACTGTGCTTGGATACTTGGCCAAGTT 1074
Query 1125 TGTTCTTGGAATCTTAGGATTAATTGTTTCTGTGGCTTGGATTGCTCACATCATCATATA 1184
||||||||||||||||||| || ||||| | |||||| |||| ||||||||||||||
Sbjct 1075 CATTCTTGGAATCTTAGGATTGATCGTTTCCATTGCTTGGGTTGCACACATCATCATATA 1134
Query 1185 TCTACTTGTTGACCCTCCCCTCTCTCCTTTTCTGAATGAAGTTTTCATCAAACTGGATGA 1244
|||||| || |||||||| ||||| |||||||| || || |||||||| || || |||||
Sbjct 1135 TCTACTCGTCGACCCTCCTCTCTCCCCTTTTCTTAACGAGGTTTTCATTAAGCTTGATGA 1194
Query 1245 CGTCTGGGGTCTTCTT-GGCACAGCTGCCTTTGCTTTCTTCTGTTTCTATCTCCTACTTG 1303
|| ||||||||| || ||||| |||||||||||||||||||||||||| || |||||||
Sbjct 1195 TGTTTGGGGTCTT-TTAGGCACTGCTGCCTTTGCTTTCTTCTGTTTCTACCTTCTACTTG 1253
Query 1304 CTGTTATTGCTGGGGCAATGATGCTTGGTTTGAAGCTGGTCTTCATTACCATTCATCCAA 1363
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1254 CTGTTATCGCTGGGGCAATGATGCTGGGTTTGAAGCTGGTCTTCATTACCATTCATCCAA 1313
Query 1364 TGAAATGGGGAGCCACTCTTATGAACTCTTTTCTCTTTAATGTCGGTCTCATTCTCCTCT 1423
||||||||||||| ||||| ||||||||||| ||||| |||||||| |||||||| || |
Sbjct 1314 TGAAATGGGGAGCTACTCTAATGAACTCTTTCCTCTTCAATGTCGGGCTCATTCTTCTTT 1373
Query 1424 GTTCTATCAGTGTGATTCAATTCTGCGCCACTGCATTTGGATATTATGCTCAAGCCACCG 1483
|||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 1374 GTTCAATCAGTGTGATTCAATTTTGTGCCACTGCATTTGGATATTATGCTCAAGCCACTG 1433
Query 1484 CCGCTCAGGAGATATTTGGCCACACTTTGCAGTCCCTTCGCGGTATTAAGTACCTCTACA 1543
| || |||||||||||||| ||||| |||||||| ||| | || ||||||||||| ||||
Sbjct 1434 CTGCCCAGGAGATATTTGGTCACACATTGCAGTCGCTTAGAGGAATTAAGTACCTTTACA 1493
Query 1544 AGTACAATGTGTTCCAGATCGGGTTTGTTGTCCTCGCTGGATTGACCTTTT-TATATTAC 1602
|||||||||||||||| |||||||||||| |||| |||||| |||| ||| ||||||||
Sbjct 1494 AGTACAATGTGTTCCAAATCGGGTTTGTTATCCTGGCTGGACTGAC-TTTCCTATATTAC 1552
Query 1603 ATTGCCTTTGGATGGAGAAGAAAAAAGCCGAGCGGCAGATTCCAGCTCTCTACCTAATGT 1662
|||||||||||||||||||||||||| || || ||| | |||||||||||| | ||||||
Sbjct 1553 ATTGCCTTTGGATGGAGAAGAAAAAAACCTAGTGGCCGTTTCCAGCTCTCTTCTTAATGT 1612
Query 1663 AAA 1665
|||
Sbjct 1613 AAA 1615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79303890090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5