BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01470.2
Length=763
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486928 jgi|Araly1|486928|fgenesh2_kg.6__62__AT5G01470.1 1223 0.0
> Ahg486928 jgi|Araly1|486928|fgenesh2_kg.6__62__AT5G01470.1
Length=773
Score = 1223 bits (662), Expect = 0.0
Identities = 725/756 (96%), Gaps = 2/756 (0%)
Strand=Plus/Plus
Query 9 ACAACTCAACGAGTGACATGGACATCGCCCTCTTCTCACCGGCGTCGCTCTTTGCTGCAG 68
||||||||||||||||||||||||| ||||||||||| ||| |||| |||||||| ||||
Sbjct 1 ACAACTCAACGAGTGACATGGACATAGCCCTCTTCTCGCCGTCGTCACTCTTTGCCGCAG 60
Query 69 ACGGTGACTCCTCTGATGGAGAGACGACGGAGACGAGCCAGAA-CTTCGTTGAGAGAAAT 127
||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 61 ACGGTGACTCCTCCGATGGAGAGACGACGGAGACGAGCCA-AAGCTTCGTTGAGAGAAAT 119
Query 128 CATCAGTTTCCTGGAATTGAACTGCAAATTCGGGAATTTGGTTTCCACCAGCTGAATGCA 187
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 120 CATCAGTTTCCTGGAATTGAATTGCAAATCCGGGAATTTGGTTTCCACCAGCTGAATGCA 179
Query 188 AACTTGCTGTGGCCAGGTACATTTGCCTTTGCTGATTGGTTACTGCAGCATCGATATTTG 247
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | |||
Sbjct 180 AACTTGCTGTGGCCAGGTTCATTTGCCTTTGCTGATTGGTTAATGCAGCATCGACACTTG 239
Query 248 ATCGAAAGGCGGCGCTGTCTCGAGATAGGAAGTGGCACAGGGGCACTAGCTATATTTCTT 307
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATCCAAAGGCGGCGCTGTCTCGAGATAGGAAGTGGCACAGGGGCACTAGCTATATTTCTT 299
Query 308 AAGAAAGAGTTTAATCTCGACATAACTACTTCAGATTACAATGATCAAGAGATTGAAGAC 367
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAGAAAGAGTTCAATCTCGACATAACTACTTCAGATTACAATGATCAAGAGATTGAAGAC 359
Query 368 AATATTGTTCATAACTGTATTGCAAACAAGATTATCCCTTCTCTGCCTCATATCAAGCAT 427
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 AATATTGTTCATAACTGTATTGCAAACAAGATAATCCCTTCTCTGCCTCATATCAAGCAT 419
Query 428 ACATGGGGTGATGAATTTCCAATTTCGGAACCAGATTGGGATTTGATCATAGCCAGTGAT 487
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 420 ACATGGGGCGATGAATTTCCAATCTCGGAACCAGATTGGGATTTGATCATAGCCAGTGAT 479
Query 488 ATCCTTCTATATGTGAAACAGTACCCAAACTTGATTAAGTCTCTGACTTTTCTTCTCAAA 547
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 480 ATCCTTCTATATGTGAAACAGTACCCAAACTTGATAAAGTCTCTGACTTTTCTTCTCAAA 539
Query 548 AAATACAAACCAACCAATGTCGTTAGTCCAGCAGAAGGTAAGCTAAATGGAGCAGACACA 607
| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 540 ACCTACAAACCAACCAATGTCGTTAGTCCAGCAGAATGCAAGCTAAATGGAGCAGACACA 599
Query 608 GAACTGCCTCGTCCTGTGTTCTTAATGAGCTGGAGACGAAGAATTGGGAAAGACGATGAG 667
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAACTGCCTCGTCCTATGTTCTTAATGAGCTGGAGACGAAGAATTGGGAAAGACGATGAG 659
Query 668 TCTCTATTCTTTACGGGCTGCGAAGAAGCTGGCCTGGAGGTGAAGCATCTCGGAAACCGA 727
|||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 660 TCTCTATTCTTTACTGGTTGCGAAGAAGCCGGCCTCGAGGTGAAGCATCTCGGAAACCGA 719
Query 728 GTTTATTGTATCAAGCTTAGAGAAAGCAACCTCTGA 763
|||||||| ||||||||||||||||| |||||||||
Sbjct 720 GTTTATTGCATCAAGCTTAGAGAAAGTAACCTCTGA 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28134712746
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5