BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G01480.1

Length=1242
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939516 jgi|Araly1|939516|scaffold_600060.1                        291    1e-77


> Ahg939516 jgi|Araly1|939516|scaffold_600060.1
Length=652

 Score =  291 bits (157),  Expect = 1e-77
 Identities = 314/387 (81%), Gaps = 22/387 (6%)
 Strand=Plus/Plus

Query  291  CTACCACAAAGAATGTGTTGAGTCTCCTTCCGTGTTTCATTCCTCTGATCATCCAAAACA  350
            |||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||
Sbjct  278  CTACCACAAAGAATGTGTTGAGTCTCCTTCCAAGTTCCATTCCTCTGATCATCCAAAACA  337

Query  351  TCCTCTTCAACTTCTCTGGATTCCC-GACATGTCTTTAGAAGAAGAACGTGATAAACGAT  409
            ||| || |||||| | ||| ||||| || |  ||    | || | ||| | | |||| ||
Sbjct  338  TCCACTCCAACTTGTTTGGTTTCCCGGA-A-ATC----GGAG-ACAACATCAAAAACAAT  390

Query  410  GTTGTTCTTGTAAACG-TGGCGTA-GACGCACTATTTTACTATTGCTCTATTTGCGATTT  467
            |||||||||||| ||| |  || | | ||  ||| |||||||||||||||||||||||||
Sbjct  391  GTTGTTCTTGTAGACGTTATCG-AGGCCG-GCTACTTTACTATTGCTCTATTTGCGATTT  448

Query  468  TGCAGTCCATATGGCATGTGCGGGAAATCCAACATCCCCAACCATTGACAATCCAAAAAG  527
            | || || ||   |  |||| |||||| ||||||||||  |  || ||||||||||||||
Sbjct  449  TTCACTCGATCCAGTGTGTGTGGGAAAACCAACATCCCTTATTATAGACAATCCAAAAAG  508

Query  528  GCATAAGCATACCCTTCATTACTTTCCCAGGAA-ATCCGGTCTGTTTTGCGATGTTTGTG  586
            ||||||||||||||| ||||||||||| || || ||| | | || ||||||| || ||||
Sbjct  509  GCATAAGCATACCCTCCATTACTTTCCAAG-AATATCTGCTTTGGTTTGCGACGTGTGTG  567

Query  587  CGTTGGTGGA-CGAT-TCTGATTACTTATATGTATGTCTCCTATGTG----ATTTCATTG  640
             ||||| ||  | || | |||||||||||| |||||||||||||| |    |||||||||
Sbjct  568  GGTTGGAGGGTC-ATAT-TGATTACTTATACGTATGTCTCCTATGCGCGCGATTTCATTG  625

Query  641  TCCATAAACGATGTGTCTACTTACCAT  667
            |||||||||||||||| ||||| ||||
Sbjct  626  TCCATAAACGATGTGTTTACTTCCCAT  652



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 46395589989


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5