BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01490.1
Length=1472
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486927 jgi|Araly1|486927|fgenesh2_kg.6__61__AT5G01490.1 2237 0.0
> Ahg486927 jgi|Araly1|486927|fgenesh2_kg.6__61__AT5G01490.1
Length=1468
Score = 2237 bits (1211), Expect = 0.0
Identities = 1390/1475 (94%), Gaps = 18/1475 (1%)
Strand=Plus/Plus
Query 8 AAAGTTTTGTGGGGTTTGACCAAAGAGAGTCAACGAAGAAGATGTCTTCAATCAGTACGG 67
||||||||||||| |||||||| |||||||||||||||||||||||||| |||| |||||
Sbjct 1 AAAGTTTTGTGGGTTTTGACCAGAGAGAGTCAACGAAGAAGATGTCTTCTATCATTACGG 60
Query 68 AATCGTCTTCTAATCTGTCTCTGTTAGAGAATGGCGGAGGAGGAAGTGATAAGCCGACGG 127
|||||||| | |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 61 AATCGTCTCCGAATCTGTCTCTGCTGGAGAATGGCGGAGGAGGAAGTGATAAGCCGACGG 120
Query 128 CGGAGACGTCGAGGCGTGTGCGGAGAACGGTATCGGCGTCGTCGTTGATAAGGAAGAGAT 187
|||||| ||| ||||| |||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 121 CGGAGATGTCTAGGCGCGTGCGGAGAACGGTATCGACGTCGTCGTTGATAAGGCAGAGAT 180
Query 188 CGGATCTGAAACTGATCT-CCAGAGTTCGTTGGGAGTTTATGAGACGAATCTTGACGAAT 246
|||||||||| ||||| | | ||||| |||||||||||| ||||||||||||||||||||
Sbjct 181 CGGATCTGAAGCTGAT-TGCGAGAGTACGTTGGGAGTTTCTGAGACGAATCTTGACGAAT 239
Query 247 CTTCAAGAAGTTCTTCTCGGCACCAAATTGTTCATCCTCTTCCCGGCCGTTCCTCTCGCC 306
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 240 CTTCAAGAAGTTGTTCTCGGCACCAAATTGTTCATTCTCTTCCCGGCCGTTCCTCTCGCC 299
Query 307 GTCGTCGCTCACCGCTATGACTGTCCACGTGCGTGGGTCTTTGCGTTGAGCTTGCTGGGA 366
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTTGTCGCTCACCGCTATGATTGTCCACGTGCGTGGGTCTTTGCGTTGAGCTTGCTGGGA 359
Query 367 TTGACACCTTTGGCCGAACGTATCAGTTTTCTCACCGAGCAAATTGCTTTCCATACCGGT 426
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 360 TTGACACCTTTGGCCGAACGTATCAGTTTTCTCACTGAGCAAATTGCTTTCCATACCGGT 419
Query 427 CCAACAGTTGGAGGATTAATGAACGCCACATGTGGAAACGCAACGGAGATGATAATAGCG 486
||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 420 CCAACAGTTGGGGGATTAATGAACGCGACATGTGGAAACGCGACGGAGATGATAATAGCG 479
Query 487 ATTCTAGCGGTTGGGCAAAGGAAGATGAGAATAGTGAAACTCTCACTTCTTGGCTCTATT 546
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 480 ATTCTAGCGGTTGGACAAAGAAAGATGAGAATAGTGAAACTCTCACTTCTTGGTTCTATT 539
Query 547 CTCTCCAATCTTCTCTTCGTCTTAGGCACTTCTCTATTCCTTGGTGGCATCTCTAATCTC 606
|||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||||
Sbjct 540 CTCTCCAATCTTCTCTTCGTCTTAGGTACCTCTCTCTTCCTTGGTGGCATCTCCAATCTC 599
Query 607 CGCAAACACCAATCTTTCGACCCAAGACAGGGAGATATGAACAGCATGTTGTTGTATCTG 666
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 600 CGCAAACACCAATCTTTCGACTCAAGACAGGGAGATATGAACTGCATGTTGTTGTATCTG 659
Query 667 GCGCTGTTATGTCAGACACTACCAATGATAATGAGATTCACAATGGAGGCTGAAGAATAC 726
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GCGCTGTTGTGTCAAACACTACCAATGATAATGAGATTCACAATGGAGGCTGAAGAATAC 719
Query 727 GATGGGTCAGATGTAGTTGTGTTGTCAAGAGCAAGCAGCTTCGTGATGCTCATTGCTTAC 786
||||| |||| ||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GATGGATCAGCTGTTGTTATGTTGTCAAGAGCAAGCAGCTTCGTGATGCTCATTGCTTAC 779
Query 787 TTGGCTTttctcatctttcacctcttctcttctcatctctctcctcctcctcctcctctt 846
|||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 780 TTGGCTTTCCTCATCTTTCACCTCTTCTCTTCTCA--TCTCT-CTCCTCCTCCTCCTCTT 836
Query 847 cctcA-G-AG-GGAGGACGTGCATGACGATGACGTGAGTGACAAGGAAGAAGAAGGAGCC 903
|||| | || ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 837 ACTCAGGAAGAAGAGGACGTGTATGACGATGACGTGAGTGACAAGGAAGAAGAAGGAGCC 896
Query 904 GTGATTGGAATGTGGAGTGCGATTTTTTGGCTTATTATAATGACACTTCTCGTTGCTTTG 963
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 897 GTAATTGGAATGTGGAGTGCCATTTTTTGGCTTATTATAATGACACTTCTCGTTGCTTTG 956
Query 964 CTCTCAGACTACCTTGTCTCCACTATCCAGGACGCAGCAGACTCGTGGGGATTATCAGTG 1023
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CTCTCAGAGTACATTGTCTCCACTATCCAGGACGCAGCAGACTCGTGGGGATTATCAGTG 1016
Query 1024 GGATTCATAGGAATAATATTATTACCAATTGTTGGTAATGCAGCTGAGCATGCTGGTGCT 1083
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1017 GGATTCATAGGAATAATATTATTACCAATTGTTGGTAATGCAGCTGAGCACGCTGGTGCT 1076
Query 1084 GTCATCTTCGCCTTCCGTAACAAACTCGATATAACTCTTGGAATTGCTCTTGGATCTGCA 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GTCATCTTCGCCTTCCGTAACAAACTCGATATAACTCTTGGAATTGCTCTTGGATCTGCA 1136
Query 1144 ACACAAATTGCTTTGTTCGTGGTACCAGTGACAGTGTTAGTGGCATGGACAATGGGAATA 1203
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1137 ACACAAATTGCTTTGTTCGTGGTACCAGTGACAGTGTTAGTGGCATGGATAATGGGAATA 1196
Query 1204 GAAATGGACCTTAACTTCAACCTTCTTGAGACCGCTTGTTTTGCCTTGTCCATTCTTGTT 1263
|| |||||||||||||||||||||||||||||| ||||| |||||||||||||| | |||
Sbjct 1197 GACATGGACCTTAACTTCAACCTTCTTGAGACCACTTGTCTTGCCTTGTCCATTATCGTT 1256
Query 1264 ACTTCCTTAGTATTACAGGATGGGACTTCGAACTATATGAAAGGCTTGGTTCTCCTCTTG 1323
||||||||| || |||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1257 ACTTCCTTAATACTACATGATGGGACGTCGAACTATATGAAAGGCTTGGTTCTTCTCTTG 1316
Query 1324 TGTTATGTTGTCATAGCGGCCTGCTTCTTTGTCTCTAACTCACCCTCAACCGAAACCAA- 1382
||||| |||||||| ||||| ||||||||||||||||| |||||||||||||| || |
Sbjct 1317 TGTTACGTTGTCATTGCGGCATGCTTCTTTGTCTCTAATTCACCCTCAACCGATAC-AGC 1375
Query 1383 TACAA-CTAATCATACAATAACGAAAAGGTAACTCGAATATTGTTT--TGT-C-TTTCTT 1437
|| || |||||||||||||||||||||||||||||||||||||||| | | | ||||||
Sbjct 1376 TA-AAGCTAATCATACAATAACGAAAAGGTAACTCGAATATTGTTTAATTTGCCTTTCTT 1434
Query 1438 TTAGTGTATTGTTGTTTTCT-TTGATTACATATTT 1471
|||||||||||||||||||| || |||||||||||
Sbjct 1435 TTAGTGTATTGTTGTTTTCTCTT-ATTACATATTT 1468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55078494270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5