BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01500.1
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486926 jgi|Araly1|486926|fgenesh2_kg.6__60__AT5G01500.1 2292 0.0
> Ahg486926 jgi|Araly1|486926|fgenesh2_kg.6__60__AT5G01500.1
Length=1444
Score = 2292 bits (1241), Expect = 0.0
Identities = 1361/1419 (96%), Gaps = 7/1419 (0%)
Strand=Plus/Plus
Query 4 AATAAAAATCTGAAATTCTCAGGCGAGATTCCGGAAGCAAAACATTCCTAAATTTCGCCA 63
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATAAAAATCTCAAATTCTCAGGCGAGATTCCGGAAGCAAAACATTCCTAAATTTCGCCA 60
Query 64 AGTGATCCGCCATGGGAGAAGAGAAGTCTCTGCTTCAGTTCCGTAGTTTTCCTTCACTCA 123
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 AGTGATCCGCCATGGGAGAAGAGAAGTCTCTGCTTCAGTTCCGTAGTATTCCTTCACTCA 120
Query 124 AGACCTCTGATTTCGCTCTCACCGAAGAACCTTCATGGAGGCTGGAGAACAACGTGTCGT 183
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGACCTCTGATTTTGCTCTCACCGAAGAACCTTCATGGAGGCTGGAGAACAACGTGTCGT 180
Query 184 CGAATCGCCGGAGAGGAAAC-AAGAGAAGCGGTGGCGTTTTTACCAATTTTGCGTCCCTT 242
|||||||||||||||||||| ||| ||||||||||||||||||||||||| || || |||
Sbjct 181 CGAATCGCCGGAGAGGAAACAAAG-GAAGCGGTGGCGTTTTTACCAATTTCGCCTCTCTT 239
Query 243 TCCGTAGCGATTAGGAGAGATCGGAGAGAATCTACATTTAACGGTCGTAATGGCGGCGGA 302
|| ||||||| ||||||||||||||||| |||||| |||||||| | ||||||||||||
Sbjct 240 TCGGTAGCGAATAGGAGAGATCGGAGAGCATCTACGGTTAACGGTGGAAATGGCGGCGGA 299
Query 303 GGCGGAGCGTTCGCATCGGTTTCGGTGGTGATTCCGAAGGAAGAGGATGAATTCGCGCCT 362
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGCGGAGCTTTCGCGTCGGTTTCGGTGGTGATTCCGAAGGAAGAGGATGAATTCGCGCCT 359
Query 363 ACCT-CGGCCCAGCTGTTGAAAAACCCCATTGCTTTACTGTCGATAGTACCGAAAGACGC 421
| || |||| |||||||||||||| || ||||||||||||||| | ||||||||||||||
Sbjct 360 A-CTACGGCTCAGCTGTTGAAAAAACCGATTGCTTTACTGTCGTTTGTACCGAAAGACGC 418
Query 422 CGCACTATTCTTCGCCGGAGCGTTCGCCGGAGCCGCCGCAAAGTCAGTGACGGCACCGCT 481
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CGCACTATTCTTCGCTGGAGCGTTCGCCGGAGCCGCCGCAAAGTCAGTGACGGCACCGCT 478
Query 482 TGACCGAATAAAGCTCCTAATGCAGACACATGGTGTTCGAGCTGGGCAACAAAGTGCTAA 541
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 479 TGACCGAATAAAGCTCCTAATGCAGACACATGGTGTTCGAGCTGGTCAACAAAGTGCTAA 538
Query 542 GAAGGCTATTGGTTTCATTGAGGCCATTACTCTTATCGGAAAGGAAGAAGGTATTAAAGG 601
||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 539 GAAGGCTATTGGTTTTATTGAGGCGATTACTCTTATCGGAAAAGAAGAAGGTATCAAAGG 598
Query 602 TTATTGGAAAGGAAATCTACCTCAGGTGATAAGGATTGTACCTTATAGCGCAGTCCAGTT 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTATTGGAAAGGAAATCTACCTCAGGTGATAAGGATTGTACCTTATAGCGCAGTCCAGTT 658
Query 662 GTTTGCATATGAAACATACAAGAAACTCTTCAGGGGGAAAGACGGTCAATTGTCAGTCCT 721
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 659 GTTTGCATATGAAACATACAAGAAACTCTTTAGGGGAAAAGACGGTCAATTGTCAGTCCT 718
Query 722 CGGAAGGCTCGGTGCTGGTGCTTGTGCTGGCATGACGTCTACTCTGATTACATACCCTTT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CGGAAGGCTCGGTGCTGGTGCTTGTGCTGGCATGACGTCTACTCTGATTACATACCCTTT 778
Query 782 AGATGTGCTGAGATTGAGGTTAGCTGTTGAACCAGGTTATCGAACCATGTCCCAGGTTGC 841
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 779 AGATGTGCTGAGACTGAGGTTAGCTGTTGAACCAGGTTATCGAACTATGTCCCAGGTTGC 838
Query 842 CTTGAACATGCTGCGGGAGGAAGGAGTTGCATCATTCTACAACGGTCTAGGTCCTTCGCT 901
||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||
Sbjct 839 CTTGAACATGCTGCGGGAGGAAGGACTTGCATCATTCTATAACGGTCTTGGTCCTTCGCT 898
Query 902 TTTAAGTATAGCTCCTTACATTGCCATCAACTTCTGCGTCTTTGATCTGGTAAAGAAATC 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTTAAGTATAGCTCCTTACATTGCCATCAACTTCTGCGTCTTTGATCTGGTAAAGAAATC 958
Query 962 TCTGCCAGAGAAGTATCAACAAAAGACACAATCATCTTTGTTAACAGCAGTAGTAGCTGC 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TCTGCCAGAGAAGTATCAACAAAAGACACAATCATCTTTGTTAACAGCAGTAGTAGCTGC 1018
Query 1022 TGCTATTGCTACCGGTACTTGCTATCCATTGGATACCATTAGAAGGCAGATGCAATTGAA 1081
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1019 TGCTATTGCTACTGGTACTTGCTATCCATTGGATACCATTAGAAGACAGATGCAATTGAA 1078
Query 1082 GGGTACTCCATATAAATCGGTATTAGACGCTTTCTCAGGTATCATTGCGCGTGAAGGAGT 1141
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GGGTACTCCATATAAATCCGTATTAGACGCTTTCTCAGGTATCATTGCGCGTGAAGGAGT 1138
Query 1142 TGTTGGCTTGTACCGTGGCTTTGTCCCCAATGCACTCAAAAGCATGCCAAACAGCAGTAT 1201
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TATTGGATTGTACCGTGGCTTTGTCCCCAATGCACTCAAAAGCATGCCAAACAGCAGTAT 1198
Query 1202 TAAGCTTACAACATTCGACATCGTCAAGAAACTCATAGCAGCGAGTGAGAAGGAGATCCA 1261
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1199 TAAGCTTACAACATTCGACATTGTCAAGAAACTCATAGCAGCGAGTGAGAAGGAGTTCCA 1258
Query 1262 AAGAATCGCGGATGATAACCGCAAGAAAGCAAGTCCTAACACAATCGATGAACAAACCTG 1321
||||||||| ||||| |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1259 AAGAATCGCAGATGACAACCGCAAGAGAGCAAGTCCTAACACAACCGATGAACAAACCTG 1318
Query 1322 AAGACGCAATTTTGGATTTCCACAAGGTCATTTTTGCCCGTTATCTTATGACCTTTGT-T 1380
||| ||| |||||| ||||||| ||||||||||||||||||||||||||||||||| | |
Sbjct 1319 AAGCCGCGATTTTGAATTTCCAGAAGGTCATTTTTGCCCGTTATCTTATGACCTTT-TCT 1377
Query 1381 TGTGTGTTTTGTAATTTGGAATGTAATAAGTTGTATGTT 1419
||||||||||||| ||||||||||||||||| || ||||
Sbjct 1378 TGTGTGTTTTGTATTTTGGAATGTAATAAGT-GTCTGTT 1415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57859082155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5