BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01510.1
Length=1861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939512 jgi|Araly1|939512|scaffold_600056.1 2575 0.0
> Ahg939512 jgi|Araly1|939512|scaffold_600056.1
Length=1575
Score = 2575 bits (1394), Expect = 0.0
Identities = 1520/1579 (96%), Gaps = 16/1579 (1%)
Strand=Plus/Plus
Query 73 CTCCGTAAAATCATTTTCGTCGCCATGTACTGTACTTTGCGATTTCCTTTGCCTCTTCAC 132
|||| ||| || |||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1 CTCCATAATATAATTTTCGT---CATGTACTGTACTTTACGATTTCCTTTGCCTCTTCAC 57
Query 133 ATTCCCCAAACTCGAACAATG---ACGTCCTGTCAGCCGAAACGACGCCGTGTTGAGCAC 189
||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||
Sbjct 58 ATTCCCCAAACTCGAACAATGTCCTCCTCCTGTCAGCCGAAACGACGCCGTGTGGAGCAC 117
Query 190 TTGCGGTGCTCTGCTCAGCCTAGTAGTATTCGTGAAGATGACGAAGATGCCGATGATAGG 249
|||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||
Sbjct 118 TTGCGGTGCTCTGCTCAGCC---TAGTCTTCGTGAAGATGACGAAGAGGCCGATGATAGG 174
Query 250 AGAGTTGGAGTTGAAAGACGAATTTCGATTGTGGTGGAGAGATACGGAAATGGCACTTCA 309
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 AGTGTTGGAGTTGAAAGACGAATTTCGATTGTGGTGGAGAGATACGGAAATGGCACTTCA 234
Query 310 AAAAGATATTTTCTAGATGATGATGAT---TCCCCTTTACAAGGCATTCTCGAGGAGCGT 366
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 235 AAAAGATATTTTCTAGATGATGATGATGACTCCCCTTTACAAGGCTTTCTCGAGGAGCGT 294
Query 367 GAAAC-TAAGCCTGATAACAATTCTCAGAGCTCTAATTCCTCCGAAACGAACATTCTTTG 425
| ||| ||||||||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 295 G-AACTTAAGCCTGATAACGATTCTCAGAGCTCTAATTCCTCTGAAACGAACACTCTTTG 353
Query 426 GCTTCCAGATGTTGTCAGGGATTTTGTTTTCCCCTCAGGCTTTCCTGGGTCTGTTTCAGA 485
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 354 GCTTCCAGATGTTGTCAAGGATTTTGTTTTCCCCACAGGCTTTCCTGGGTCTGTTTCAGA 413
Query 486 TGATTACTTGGACTATATGCTGTGGCAGTTCCCAACCAATATTACTGGCTGGATTTGTAA 545
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 414 TGATTACTTGGACTATATGCTGTGGCAGTTCCCTACCAATGTTACTGGCTGGATTTGTAA 473
Query 546 TGTATTAGTCACGTCAAGTCTTCTCAAGGCGGTTGGGGTTGGCTCTTTCTCAGGAACTTc 605
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 474 TGTATTAGTCACGTCAAGTCTTCTCAAGGCGGTTGGCGTTGGCTCTTTCTCAGGAACTTC 533
Query 606 tgctgccgctactgctgctgcttctgctgcAGCCATCAGATGGGTGTCCAAGGATGGAAT 665
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 534 TGCTGCCGCTACTGCTGCTGCTTCTGCTGCAGCCATCAGATGGGTCTCCAAGGATGGAAT 593
Query 666 TGGAGCTCTTGGCCGTCTTCTTATTGGTGGACGTTTTGGTAGTCTTTTTGATGATGATCC 725
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 594 TGGAGCTCTTGGCCGTCTTCTTATTGGTGGACGTTTCGGTAGTCTTTTTGATGATGATCC 653
Query 726 TAAGCAATGGCGCATGTATGCAGATTTTATTGGCAGTGCTGGAAGCTTCTTTGATTTGGC 785
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 654 TAAGCAATGGCGAATGTATGCTGATTTTATTGGCAGTGCTGGAAGCTTCTTTGATCTGGC 713
Query 786 AACCCAGCTATATCCATCCCAGTTCCTACTGTTGGCATCCACGGGAAATCTTGCCAAGGC 845
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GACACAGCTATATCCATCCCAGTTCCTACTGTTGGCATCCACGGGAAATCTTGCCAAGGC 773
Query 846 TGTGGCTAGAGGATTGAGAGACCCTTCATTCAGGGTGATTCAGAATCATTTCGCTATCTC 905
||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 774 TGTGGCTAGAGGATTGAGAGACCCTTCATTCAGAGTGATTCAGAATCATTTTGCCATCTC 833
Query 906 AGGAAATCTTGGAGAGGTAGCAGCCAAGGAAGAAGTGTGGGAAGTTGCTGCGCAGCTAAT 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 AGGAAATCTTGGAGAGGTAGCAGCCAAGGAAGAAGTGTGGGAAGTTGCTGCGCAGCTAAT 893
Query 966 TGGTCTTGGTTTCGGCATTCTGATCATTGACACGCCGGGCCTTGTAAAGTCATTTCCGTT 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TGGTCTTGGTTTCGGCATTCTGATCATTGACACGCCGGGCCTTGTAAAGTCATTTCCGTT 953
Query 1026 TGTGTTACTTACATGGACGAGCATTAGACTTGTTCACCTCTGGCTACGCTACCAGTCGCT 1085
||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 954 TGTGTCACTTACATGGACGAGTGTTAGACTTGTTCACCTCTGGCTACGCCACCAGTCGCT 1013
Query 1086 TGCAGTCCTACAATTTAACACGGTAAATCTCAAGCGTGCTCGTATCATAGTAGAATCTCA 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TGCAGTCCTACAATTTAACACGGTAAATCTCAAGCGTGCTCGTATCATAGTAGAATCTCA 1073
Query 1146 TGTTGTGCACTCAGTTGTACCAGGATATGTTGACTGCAACAAGCGAGAAAACATTTTGCT 1205
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1074 TGTTGTGCACTCAGTTGTACCAGGATATGTTGACTGCAACAAGCGAGAAAACATTTTGTT 1133
Query 1206 GTGGCAGAGGTTCATGAAACCTCGAATCATCTTTGGTGTATCCCTTGAAGA-GTTGTCTG 1264
|||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 1134 GTGGCAGAGGTTCATGAAACCTCGGATCATCTTTGGTGTATCCCTTGAAGAAGT-GTCTG 1192
Query 1265 GTCTGGAGAAATCTGTTTCTAAGGTCAAGGCACTCCTTAAGATGTACACAAAGGAGAAAT 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 GTCTGGAGAAATCTGTTTCTAAGGTCAAGGCACTCCTTAAGATGTACACAAAGGAGAAAT 1252
Query 1325 ATATTCTTACGTTGAATAAGTTGAACAAGGATACTGAGTTTTCTGTGTCCTTTAAGGTGA 1384
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1253 ATATTCTTACGTTGAATAAGTTGAACAATGATACTGAGTTTTCTGTGTCTTTTAAGGTGA 1312
Query 1385 ATGCCACAAGCAGAGACGTGTTGAGATGCCTTTGGCAAGCATATTGGTTAGAGGAGAACA 1444
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1313 ATGCCACAAGCAGAGACGTGTTGAGATGTCTTTGGCAAGCATATTGGTTAGAGGAGAACA 1372
Query 1445 TGGAAGAAAGCTTTAAAGACAAGGATAGTGTGTTCCACTGGCTGAAGCAAAGCTTGTCGG 1504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 TGGAAGAAAGCTTTAAAGACAAGGATAGTGTGTTCCACTGGCTGAAGCAAAGCTTGTCGG 1432
Query 1505 AGATGGACAACAAGTTTGATGATTTCTTGTTCAAATTGGATACTGCTGGATGGAATCTAC 1564
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1433 AGATGGACAACAAGTTTGATGATTTCTTGTTCAAGTTGGATACTGCTGGATGGAATCTAC 1492
Query 1565 GTGAATCTAACTTGAAGGTTCCCAACCAAGTTCTCATAGACCAGGAATCTATCCCTTTCT 1624
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1493 GTGAATCTAACTTGAAGATTCCCAACCAAGTTCTCATCGACCAGGAATCTATCCCTCTCT 1552
Query 1625 AACACTCGATTGATTGATT 1643
|||| ||||||||||||||
Sbjct 1553 AACATTCGATTGATTGATT 1571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69895599575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5