BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01520.1
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486924 jgi|Araly1|486924|fgenesh2_kg.6__58__AT5G01520.1 1703 0.0
> Ahg486924 jgi|Araly1|486924|fgenesh2_kg.6__58__AT5G01520.1
Length=1253
Score = 1703 bits (922), Expect = 0.0
Identities = 1141/1242 (92%), Gaps = 34/1242 (3%)
Strand=Plus/Plus
Query 63 TTTTGATATTACGTGTGCTCTACGCGAATCTATCAATATCTAAATCctctctttctctct 122
|||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct 38 TTTTGATATTACGTGTGCTCTACGCGAATCTATCAATATCTAAA-----TC-ATCTC-CT 90
Query 123 ctctctcctccttcttcttcttcttcCTGTCGCTGCCTTGTGGTTGAGTGAGCaaaaaaa 182
||||| |||| || |||||||||||||||||| ||||||||||||||||| ||| |
Sbjct 91 -TCTCT-CTCC-TC--CTTCTTCTTCCTGTCGCTACCTTGTGGTTGAGTGAG-TAAATAT 144
Query 183 CTCAAAACCCTCCATGGAAATGGGAGAGAGAATCAATTCGAGTTGTTGTTAGGGGGTTTG 242
|| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 145 CTGGAAACCATCCATGGAAATGGGAGAGAGAATCAATTCTTGTTGTTGTTAGAGGGTTTG 204
Query 243 CGATATTTTAGGCTTCTGTCGGTGATCTCGACCaaaaaaaaTAAACAAAGGAGCTAG-TA 301
||||||||||||||||||||||||||||||| | ||||| |||||||||||||| | ||
Sbjct 205 CGATATTTTAGGCTTCTGTCGGTGATCTCGA-C--AAAAATTAAACAAAGGAGCT-GCTA 260
Query 302 GGGTTCTGTTT-TCTCTAT--CACTCGGAAGGAAGCTGGTTTATGTCAAAAC-TTTGTTC 357
|||| | ||| ||||| | || |||||||||||||||||||||| || | | | ||
Sbjct 261 -GGTT-T-TTTCTCTCTCTCCCATTCGGAAGGAAGCTGGTTTATGTTGAATCGTCT-TTG 316
Query 358 TTCGGAAAATGCGAAAATCGTTCAAGGATTCACTCAAGGCTCTTGAAGCTGATATCCAGT 417
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 317 TTCGGAAAATGCGAAAATCGTTTAAGGATTCACTCAAGGCTCTTGAAGCTGATATCCAGT 376
Query 418 TCGCCAACACTCTGGCGTCAGAGTACCCAGAGGAGTATGATGGTGGCTACGTTCAGATGA 477
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 377 TCGCCAACACTCTGGCATCAGAGTATCCAGAGGAGTATGATGGTGGCTACGTTCAGATGA 436
Query 478 GATTATCTTACAGCCCGGCGGCTCATCTCTTTCTCTTCCTTCTTCAGTGGACTGATTGTC 537
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 GATTATCTTACAGCCCCGCGGCTCATCTCTTTCTCTTCCTTCTTCAGTGGACTGATTGTC 496
Query 538 ATTTCGCTGGCGCTTTGGGCTTGCTTAGGATCCTTATTTATAAGGCATATGTTGATGGGA 597
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 497 ATTTCGCTGGCACTTTGGGATTGCTTAGGATCCTTATTTATAAGGCATATGTTGATGGGA 556
Query 598 AGACCACAATGTCGCTACATGAACGCAAAACTAGTATCAGAGAATTCTATGATGTGTTGT 657
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 557 AGACCACAATGTCGCTACATGAACGCAAAGCTAGTATCAGAGACTTCTATGATGTGTTGT 616
Query 658 TTCCTTCGCTATTGCAACTTCATGGAGGGATCACCGATGTAGAAGAAAGGAAACAGAAGG 717
|||||||||||||||||||||| |||||||| |||||| ||||||||||||| |||||||
Sbjct 617 TTCCTTCGCTATTGCAACTTCACGGAGGGATAACCGATCTAGAAGAAAGGAAGCAGAAGG 676
Query 718 AGATATGCGACAAAAGATACCGTAAAAAGGACAGAACAGATAAAGGAAAGATGTCGGAGA 777
|||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 677 AGATATGCGACAAACGATACCGGAAAAAGGACAGAACAGAGAAAGGAAAGATGTCGGAGA 736
Query 778 TCGATTTGGAGAGGGAAGAAGAGTGTGGAATCTGCTTGGAGATTCGAAACAAAGTTGTTC 837
||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 737 TCGATTTGGAGAGGGAAGAAGAGTGTGGAATTTGCTTGGAGATTCAAAATAAAGTTGTTC 796
Query 838 TTCCTACGTGCAATCACTCCATGTGTATAAACTGCTACAGAAACTGGCGTGCACGGTCAC 897
| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 797 TCCCTACTTGCAATCACTCCATGTGTATAAACTGCTACAGAAACTGGCGTGCAAGGTCAC 856
Query 898 AGTCGTGCCCGTTCTGTCGAGGCAGCTTGAAAAGAGTGAATTCTGGTGATCTATGGATAT 957
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 857 AGTCGTGCCCGTTCTGTCGAGGCAGCTTGAAAAGAGTGAATTCTGGTGATCTGTGGATAT 916
Query 958 ACACTTGTAGCGCCGAGATTGCAGATTTACCAGCGATTTACAAGGAGAATCTGAAGAGGT 1017
|||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 917 ACACTTCTAGCGCCGAGATTGCAGATTTACCGGCGATTTACAAGGACAATCTGAAGAGGT 976
Query 1018 TGTTGATATACATTGACAAGTTGCCTCTCGTTACTTCTGATCCAAATCTTGTCCCTTATG 1077
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 977 TGTTGATATACATTGACAAGTTGCCTCTCGTTACTTGTGATCCAAATCTAGTCCCTTATG 1036
Query 1078 CTCCTCTTCCTCGGTGAAC-ATTACATTCTCTCTGTTTCTTGTTATGCACATAGCAATTT 1136
||||||||||||||||||| | ||||||||| | |||||||||||||||||||||||||
Sbjct 1037 CTCCTCTTCCTCGGTGAACGAACACATTCTCTTTATTTCTTGTTATGCACATAGCAATTT 1096
Query 1137 CTTTCAAACAAATTTCATCTATTTATGTCCACTTTGTATATAATATTTATGTGTTTTTAG 1196
|| ||||| | |||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1097 CTATCAAA-A--TTTCATCTATTTGTGTCCACTTTGTATATAATATTTATGTGTTTCCAG 1153
Query 1197 TTGGTTTTTCATCTT-TCTA-TAGTCTCAGATTTGGGTTTGTATATAACAACCATTGGTT 1254
|| | | ||| | || | ||||| |||||||||||||||||||||||| ||||||
Sbjct 1154 CCC-TTGTGCTTCTAGT-TAATCGTCTCTGATTTGGGTTTGTATATAACAACCGTTGGTT 1211
Query 1255 ATTGACATTTAGATCAAAAATTCGATATCATATTTGCTGATT 1296
||||||||||||||| |||||||||||||| ||||||| |||
Sbjct 1212 ATTGACATTTAGATCCAAAATTCGATATCACATTTGCTTATT 1253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48835456677
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5