BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01560.1
Length=2393
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486919 jgi|Araly1|486919|fgenesh2_kg.6__53__AT5G01560.1 2846 0.0
Ahg486921 jgi|Araly1|486921|fgenesh2_kg.6__55__AT5G01540.1 1565 0.0
Ahg353690 jgi|Araly1|353690|fgenesh1_pg.C_scaffold_7000863 100 4e-20
> Ahg486919 jgi|Araly1|486919|fgenesh2_kg.6__53__AT5G01560.1
Length=2299
Score = 2846 bits (1541), Expect = 0.0
Identities = 1790/1908 (94%), Gaps = 25/1908 (1%)
Strand=Plus/Plus
Query 129 TCTCGATCATCGACAATCTGTAAGAGAAACCAAACTCACTTCTCCTTCTAAGAATCATCT 188
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 88 TCTCGATCATCGACAATCTGTAAGAGAAACCAAACTCTCTTCTCCTTCTAAGAATCATCT 147
Query 189 TCTGTTGTCATCTCCCAAA-GCCGTTATTTCTGTTTTTGTTTC-ACTTTCCTACCTCAAT 246
| ||||||||||| ||||| ||||||||||||||||||||||| | ||| ||||||||||
Sbjct 148 TTTGTTGTCATCTTCCAAACGCCGTTATTTCTGTTTTTGTTTCAATTTTTCTACCTCAAT 207
Query 247 TTTGTTTTTGGTTATCCCTCTTATCCCTATCGATCAC-T-TATGGGCAGAGCAAAATCCA 304
|||||||||||||||||||| |||| ||||||||||| | |||||||||| |||| ||||
Sbjct 208 TTTGTTTTTGGTTATCCCTC-TATCTCTATCGATCACTTATATGGGCAGATCAAACTCCA 266
Query 305 TGGTCTCTCTCTTGTTGGT-G-C--TC-T----TCCTTGTTAGAGCTCATG-TAGCAACA 354
||||||| || |||||| | | | || | |||||||||||||||| | ||||||||
Sbjct 267 TGGTCTCGCTTTTGTTGATGGTCTTTCTTGAGATCCTTGTTAGAGCTCA-GATAGCAACA 325
Query 355 ACAGAGACGACAACAGAGTTCATTTTCCACGGTTTCAAAGGAAACCAATCAGAAATTCAT 414
||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 326 ACAGAGATGACAACAGAGTTCATTTTCCATGGTTTCAAAGGAAACCAATCCGAAATTCAG 385
Query 415 ATGCAAGGAGATTCAACCATCACATCCAACGGACTTTTGAGGCTCACCGATCGAAACTCG 474
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 386 ATGCAAGGAGATTCAACCATCACATCCAACGGACTATTAAGGCTCACAGATCGAAACTCG 445
Query 475 GACGTTGTTGGTACCGCTTTCTACCATAAACCGGTGAGATTGCTCGACAGTAACTCCACC 534
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 GACGTTGTCGGTACAGCTTTCTACCATAAACCGGTGAGATTGCTCGACAGTAACTCCACC 505
Query 535 AATACGACGGTTCGTTCCTTTAGCACTTCTTTCATCTTCATAATCCCTTCAAGCTCAACA 594
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 506 AATACGACGGTTCGTTCCTTTAGCACTTCTTTCGTCTTCGTAATCCCTTCAAGCTCAACA 565
Query 595 AGCAACGGAGGTTTCGGCTTCACATTCACACTCTCTCCAACCCCAAACCGTACAGATGCG 654
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 566 AGCAACGGAGGTTTTGGCTTCACATTCACACTCTCTCCAACCCCAAACCGTACAGACGCA 625
Query 655 GATCCCGAGCAGTACATGGGGCTTCTCAACGAAAGAAACGACGGGAATTCGAGCAATCAC 714
||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 626 GATCCCGAGCAGTTCTTGGGGCTTCTCAACGAAAGAAACGACGGGAATTCAAGCAATCAC 685
Query 715 GTTTTCGCTGTGGAGTTCGATACGGTACAAGGATTCAAAGACGGAACAAATCGAATAGGC 774
||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 686 GTTTTTGCTGTGGAATTCGACACGGTACAAGGATTCAAAGACGGTACAAATCGAATAGGC 745
Query 775 AACCACATCGGTCTAAATTTCAACAGTCTCTCTTCAGATGTCCAAGAACCAGTGGCTTAC 834
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 746 AACCACATCGGTCTAAATTTCAACAGTCTCTCTTCAGATGTCCAAGAACCGGTGGCTTA- 804
Query 835 TT-CAACAACAACGATAGTCAGAAAGAGGAATTCCAACTGGTGAGCGGCGAGCCAATCCA 893
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 TTACAACAACAACGATAGTCAGAAAGAGGAATTCCAACTGGTGAGCGGCGAGCCAATCCA 864
Query 894 AGTCTTCTTGGATTATCACGGACCAACCAAAACGCTTAACCTCACTGTTTACCCAACCAG 953
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 865 AGTCTTCTTGGATTATCACGGACCAACCCAAATGCTTAACCTCACTGTTTACCCAACCAG 924
Query 954 ATTGGGATATAAACCAAGAATCCCCTTGATCTCACGAGAGGTTCCAAAACTGTCAGATAT 1013
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 ACTGGGATATAAACCAAGAATCCCCTTGATCTCACGAGAGGTTCCAAAACTGTCAGATAT 984
Query 1014 TGTCGTAGACGAAATGTTCGTCGGATTCACAGCAGCGACTGGGAGACACGGACAATCGAG 1073
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 TGTGGTAGATGAAATGTTCGTCGGATTCACAGCAGCGACTGGGAGACACGGACAATCGAG 1044
Query 1074 TGCTCATTACGTCATGGGTTGGAGTTTCGCAAGCGGTGGAGAACATCCACTTGCAGCTAT 1133
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1045 TGCTCATTATGTGATGGGTTGGAGTTTCGCAAGCGGCGGAGAACATCCACTTGCAGCTAT 1104
Query 1134 GCTCGACATCTCCCAACTTCCTCCTCCGCCTCCGAATAAGGCGAAGAAGAGAGGTTACAA 1193
||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| |||||
Sbjct 1105 GCTCGACCTCTCCCAACTTCCTCCTCCGCCTCCAAATAAGGAGAAGAAGAGAGGCTACAA 1164
Query 1194 TGGTAAGGTCATCGCTCTTATCGTGGCTTTATCGACTGTTATATCGATCATGTTGGTGTT 1253
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 TGGTAAGGTCATCGCTCTGATCGTGGCTTTATCGACTGTTATATCGATCATGTTGGTGTT 1224
Query 1254 GCTGTTCCTCTTCATGATGTACAAAAAACGAATGCAGCAAGAAGAGATTCTAGAAGATTG 1313
| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1225 GTTGTTTCTCTTCATGATGTACAAAAAGCGAATGCAGCAAGAAGAGATTCTAGAAGATTG 1284
Query 1314 GGAAATCGATCATCCTCACAGATTTCGATACAGAGACCTCTACAAGGCTACTGAGGGATT 1373
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1285 GGAAATCGATCATCCTCACAGATTTCGATACAGAGACCTCTATGCTGCTACTGATGGATT 1344
Query 1374 CAAGGAGAATAGGGTTGTCGGAACCGGAGGATTCGGAATTGTTTACAGAGGAAACA--TC 1431
|||||||||| || ||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1345 CAAGGAGAATCGGATTGTCGGAACCGGAGGATTCGGAGTTGTTTACAGAGGAAACATCTC 1404
Query 1432 A-GATCATCGTCTGATCAAATCGCAGTGAAGAAGATAACCCCAAATAGCATGCAAGGTGT 1490
| ||| || ||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1405 ATCATCTTCCTCTGAACAAATCGCAGTGAAGAAGATAACTCCGAATAGCATGCAAGGTGT 1464
Query 1491 TCGAGAATTTGTCGCGGAGATTGAGAGTTTGGGGA-GATTAAGGCATAAGAATCTGGTGA 1549
||||||||| ||||| ||||| |||||||| |||| ||||||||||||||||||||||||
Sbjct 1465 TCGAGAATTCGTCGCAGAGATAGAGAGTTT-GGGACGATTAAGGCATAAGAATCTGGTGA 1523
Query 1550 ACCTCCAAGGATGGTGTAAACACAGAAACGATCTCTTGTTGATCTACGATTATATTCCCA 1609
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1524 ACCTCCAAGGATGGTGTAAACACAGAAACGATCTCTTGTTGATTTACGATTATATACCCA 1583
Query 1610 ACGGAAGCTTGGACTCGCTGCTTTACAGTAAACCGAGAAGAAGCGGAGCCGTTTTGTCGT 1669
|||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct 1584 ACGGAAGCTTAGACTCGCTGCTCTACAGTAAACCGAGAAGAAGCGGCGCGGTTTTGTCGT 1643
Query 1670 GGAACGCGCGTTTTCAAATCGCTAAAGGAATCGCGTCTGGTTTGTTGTATCTCCACGAAG 1729
|||||||||||||||| ||||| | ||||||||||||||||||||||||||| ||||| |
Sbjct 1644 GGAACGCGCGTTTTCAGATCGCCAGAGGAATCGCGTCTGGTTTGTTGTATCTACACGAGG 1703
Query 1730 AATGGGAACAGATCGTGATTCACAGAGACGTGAAACCTAGCAATGTTCTGATTGACTCCG 1789
|||||||| |||| ||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct 1704 AATGGGAAAAGATTGTGATTCACAGAGACGTGAAACCTAGCAACGTTTTGATTGACGACG 1763
Query 1790 ATATGAATCCTAGATTGGGAGACTTT-GGACTCGCGAGGCTTTACGAACGCGGATCTCAA 1848
||||||| |||||||||||||| ||| || || |||||||||||||||||||||||||||
Sbjct 1764 ATATGAACCCTAGATTGGGAGA-TTTCGGGCTAGCGAGGCTTTACGAACGCGGATCTCAA 1822
Query 1849 TCGTGCACCACCGTAGTCGTCGGCACGATTGGATATATGGCGCCGGAGCTAGCCCGCAAC 1908
||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1823 TCGCGAACCACCGTAGTCGTCGGCACGATTGGGTATATGGCGCCGGAGCTAGCCCGCAAC 1882
Query 1909 GGAAACTCCTCATCAGCTTCCGACGTTTTCGCGTTTGGCGTTTTGCTGTTAGAGATCGTC 1968
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1883 GGAAACTCCTCATCAGCTTCCGACGTTTTCGCGTTTGGCGTTTTGCTGTTAGAAATCGTC 1942
Query 1969 TCCGGGAGGAAACCGACGGACTCTGGGACCTTCTTTATAGCCGACTGG 2016
|||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 1943 TCCGGGAGAAAACCGACGGACTCTGGGACCTTCTTTATAGCGGATTGG 1990
Score = 455 bits (246), Expect = 7e-127
Identities = 287/307 (93%), Gaps = 1/307 (0%)
Strand=Plus/Plus
Query 2054 CGATCGACCCGAGACTCGGATCTGGTTACGACGAAGGAGAGGCAAGGCTAGCTCTCGCCG 2113
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1993 CGATCGATCCGAGACTCGGATCTGGTTACGACGAAGGAGAGGCAAGGCTTGCTCTTGCCG 2052
Query 2114 TCGGTTTGCTCTGTTGTCACCACAAACCGGAATCTCGGCCGCTGATGAGAATGGTGCTCA 2173
| ||||||||||| || ||||| ||||||||||||||||||| ||||||||||||||| |
Sbjct 2053 TGGGTTTGCTCTG-TGCCACCATAAACCGGAATCTCGGCCGCCGATGAGAATGGTGCTTA 2111
Query 2174 GGTACCTGAACAGAGACGAAGATGTTCCTGAGATTCACGACAATTGGGGATATTCAGATT 2233
||||||||||||||||||| ||||| |||| |||| | ||||| ||||||||||||||||
Sbjct 2112 GGTACCTGAACAGAGACGAGGATGTCCCTGTGATTGAAGACAACTGGGGATATTCAGATT 2171
Query 2234 CTTCAAGAACAGATTTAGGATCGAAACTCGTCGGATACATTTCGTCGGATAGGGCTTCGA 2293
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 2172 CTTCAAGAACCGATTTAGGATCGAAACTCGTCGGATATATTTCGTCGGATAGGGCATCGA 2231
Query 2294 GCTCACACTCACACACATCTTCGTCTCTCACCAGAATTTCTTCAACTTCTTTAATCAGTG 2353
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 2232 GCTCACACTCACACACATCTTCGTCTCTCACCAGAATTTCTTCTACTTCTTTTATCAGTG 2291
Query 2354 GTAGATA 2360
|||||||
Sbjct 2292 GTAGATA 2298
Score = 145 bits (78), Expect = 2e-33
Identities = 84/87 (97%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 1 AACAATAAAAGATACTTTCCCTTAATTATAGAGCATCCTACAATGTATCATTTTACTATT 60
|||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||
Sbjct 1 AACAATAAAAGATACTTTCCCTTAATTATAGAGCATCCTATAATGTGTCATTTAACTATT 60
Query 61 TATCAAAAACCTGCAAGTTAGGAAGTT 87
|||||||||||||||||||||||||||
Sbjct 61 TATCAAAAACCTGCAAGTTAGGAAGTT 87
> Ahg486921 jgi|Araly1|486921|fgenesh2_kg.6__55__AT5G01540.1
Length=2283
Score = 1565 bits (847), Expect = 0.0
Identities = 1604/1956 (82%), Gaps = 105/1956 (5%)
Strand=Plus/Plus
Query 356 CAGAG-ACGACAACAGAGTTCATTTTCC-ACGG-TTTCAAAGGAAACCAATCAGAA-ATT 411
||||| || |||||||| || | ||||| | || |||| |||||||||||| || |||
Sbjct 173 CAGAGAACAACAACAGATTTTACTTTCCGA-GGTTTTC-TTGGAAACCAATCA-AAGATT 229
Query 412 C--ATATGCAAGGAGATTCAACCATCACATCCAACGGACTTTTGAGGCTCACCGATCGAA 469
| || || |||||| | | |||| | || | ||||| ||||||||||| ||||| |
Sbjct 230 CGGAT-TG-AAGGAGCCGCGATGATCAAACCCGAGGGACTATTGAGGCTCACTGATCGGA 287
Query 470 ACTCGGACGTTGTTGGTACCGCTTTCTACCATAAACCGGTGAGATTGCT--CGAC-AGT- 525
| || ||||| ||||| ||||||||||| ||||||||||||||||| ||| |||
Sbjct 288 AGTCAAACGTTACCGGTACGGCTTTCTACCACAAACCGGTGAGATTGCTGGAGACTAGTA 347
Query 526 --AACTCCACCAATACGAC-G-GTTCGTTCCTTTAGCACTTCTTTCATC--T-TCATAAT 578
|| |||| ||| ||| | | ||||||||||||||||||||||||||| | |||||||
Sbjct 348 GAAATTCCA-CAA-ACGTCAGAGTTCGTTCCTTTAGCACTTCTTTCATCTTTGTCATAAT 405
Query 579 CCCTTCAAGCTCAACAAGCAACGGAGGTTTCGGCTTCACATTCACACTCTCTCCAACCCC 638
||||||||||| ||||||| |||||| || |||||||||||||| |||||||||||
Sbjct 406 CCCTTCAAGCT---CAAGCAATAAAGGTTTTGGATTCACATTCACACTATCTCCAACCCC 462
Query 639 AAACCGT-ACAGATGC-GGATCCCG-AGCAGTACATGGG-GCTTCTCAACGAAAGA-AAC 693
| ||| || |||| |||| ||| | |||||| |||| | || ||||| ||||| |||
Sbjct 463 TTATCGTCTCA-ATGCTGGAT-CCGCA-CAGTACTTGGGAG-TTTTCAAC-AAAGAGAAC 517
Query 694 GACGGGAATTCGAGCAATCACGTTTTCGCTGTGGAGTTCGATACGGTACAAGGATTCAAA 753
| ||| || | || |||||||||||||| ||||| ||||| ||||| ||||||| || |
Sbjct 518 AATGGGGATCCTAGGAATCACGTTTTCGCAGTGGAATTCGACACGGTGCAAGGATCCAGA 577
Query 754 GACG-GAACA--AATC-GAATAGGCAACCACATCGGTCTAAATTTCAACAGTCTCT-CTT 808
|||| |||| | | ||||||| ||| |||||||||| |||| |||||||| | |||
Sbjct 578 GACGACAACACCGA-CAGAATAGGAAACGACATCGGTCTGAATTACAACAGTC-GTACTT 635
Query 809 CAGATGTCCAAGAACCAGTGGCT-TACTT-CAACAACAACGATAGT--C-AGAAAGAGGA 863
| ||| | ||||||||||| | | || || |||||| | ||| | | | ||||| ||
Sbjct 636 CGGATCTACAAGAACCAGTCG-TGTA-TTACAACAATGATGATCCTAACAAAAAAGAAGA 693
Query 864 ATTCCAACTGGTGAGCGGCGAGCCAATCCAAG-TCTTCTTGGATTATCACGGACCAACCA 922
||||| || | ||| ||| | || || |||| ||| ||||| ||| | ||||||| ||
Sbjct 694 TTTCCAGCTTGAGAGTGGCAATCCGATTCAAGCCCTT-TTGGAGTATGATGGACCAA-CA 751
Query 923 -AAACGCTTAACCTCACTGTTTACCCAACCAGATTGGGATATAAACCAAGAATCCCCTTG 981
||| ||| ||| |||| ||||| || | |||||||| | |||||| | || || |||
Sbjct 752 CAAATGCTAAACGTCACCGTTTATCCGGCGAGATTGGGGTTTAAACCCACAAAGCCTTTG 811
Query 982 ATCTCACGAGAGGTTCCAAAACTGTCAGATATTGTCG-TAGACGAAATGT-TCGTCGGAT 1039
||||| | | | ||||||||||||| ||| ||||| | | | ||||||| | |||||||
Sbjct 812 ATCTCTCAACATGTTCCAAAACTGTTAGAGATTGT-GCAACAAGAAATGTAT-GTCGGAT 869
Query 1040 TCACAGCAG-CGACTGGGAGACACGGACAATCGAGTGCTCATTACGTCATGGGTTGGAGT 1098
|||| || | |||| ||| || | || || ||||||||||||||||| ||||||||||||
Sbjct 870 TCACTGC-GTCGAC-GGG-GA-AAGGTCAGTCGAGTGCTCATTACGTAATGGGTTGGAGT 925
Query 1099 TTCGCAAGCGGTGGAGAACATCCACTTGCAG-CTATGCTCGA-CATCTCCCAACTTCCTC 1156
||| ||||||| ||||||| |||| |||||| | | ||||| | |||| | |||||||
Sbjct 926 TTCTCAAGCGGCGGAGAACGTCCAATTGCAGAC-GTCCTCGATC-TCTCGGAGCTTCCTC 983
Query 1157 CTCCGCCTCCGAATAAGGCGAAG-AAGAGAGG-TTACAATGGT-AAGGTCATCGCTCTTA 1213
||||||| ||||||||||||||| |||| ||| ||| ||| | || ||||| | | | |
Sbjct 984 CTCCGCCGCCGAATAAGGCGAAGAAAGA-AGGTTTA-AATTCTCAA-GTCATTGTTATGA 1040
Query 1214 TCGTGGCTTTATCGACTGTTATAT-C-GATCATG-TTGGTGTTGCTGTTCCTCTTCATGA 1270
||||| |||||||| | | || || | | ||||| || |||||||| ||| ||||| | |
Sbjct 1041 TCGTGTCTTTATCGGCCG-TA-ATGCTGGTCATGCTT-GTGTTGCTCTTCTTCTTCGTCA 1097
Query 1271 TGTACAAAAA-ACGAAT-GCAGCAAGAAGAGATTCTAGAAGATTGGGAAATCGATCATCC 1328
|||||||||| | || | | | |||||||||| ||| ||||| |||||||||||||||||
Sbjct 1098 TGTACAAAAAGA-GATTGGGA-CAAGAAGAGACTCTTGAAGACTGGGAAATCGATCATCC 1155
Query 1329 TCACAGATTTCGATACAGAGACCTCTAC-AAGGCTACTGAGGGATTCAAGGAGAATAGGG 1387
|| |||||| |||||||||| |||||| | || || || ||||||||| || | |||
Sbjct 1156 TCGCAGATTGAGATACAGAGATCTCTACGTA-GCCACGGATGGATTCAAGAAG-ACGGGG 1213
Query 1388 -TTGTCGGAACCGGAGGATTCGGAATTGTTTACAGAGG-AAACATCAGATCATCGTCTGA 1445
| |||||||||||||||| |||| |||| || ||| |||| || | || || ||
Sbjct 1214 ATCATCGGAACCGGAGGATTTGGAACCGTTTTCAAAGGAAAAC-TCCCA-AAT--TCGGA 1269
Query 1446 TCAAATCGCAGTGAAGAAGATAA-CCCCAAATAGCATGCAAGGTGTTCGAGAATTTGTCG 1504
|| ||||| ||||||||||||| ||| | ||||| |||||||||||||||||||||||
Sbjct 1270 TCCCATCGCTGTGAAGAAGATAATTCCC-AGTAGCAGGCAAGGTGTTCGAGAATTTGTCG 1328
Query 1505 CGGAGATTGAGAGTTTGGGGAGATTAAGGCATAAGAATCTGGTGAACCTCCAAGGATGGT 1564
| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1329 CAGAGATCGAGAGTTTGGGGAAATTAAGGCATAAGAATCTGGTGAACCTCCAAGGATGGT 1388
Query 1565 GTAAACACAGAAACGATCTCTTGTTGATCTACGATTATATTCCCAACGGAAGCTTGGACT 1624
| ||||||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 1389 GCAAACACAAAAACGATCTCTTGTTGATTTACGATTATATCCCCAACGGAAGCTTAGACT 1448
Query 1625 CGCTGCTTTACAGTAAACCGAGAAGAAGCGGAGCCGTTTTGTCGTGGAACGCGCGTTTTC 1684
| ||||| |||| | ||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 1449 CTCTGCTCTACACTGTACCGAGAAGAAGCGGCGCCGTGTTGTCGTGGAACGCGCGTTTCC 1508
Query 1685 AAATCGCTAAAGGAATCGCGTCTGGTTTGTTGTATCTCCACGAAGAATGGGAACAGATCG 1744
| |||||| |||||||||||||||||||||||||||| ||||||||||||||| |||| |
Sbjct 1509 AGATCGCTGAAGGAATCGCGTCTGGTTTGTTGTATCTTCACGAAGAATGGGAAAAGATTG 1568
Query 1745 TGATTCACAGAGACGTGAAACCTAGCAATGTTCTGATTGACTCCGATATGAATCCTAGAT 1804
|||||||||||||||||||||||||||| ||| ||||||| ||| | ||||| |||||||
Sbjct 1569 TGATTCACAGAGACGTGAAACCTAGCAACGTTTTGATTGATTCCAAGATGAACCCTAGAT 1628
Query 1805 TGGGAGACTTTGGACTCGCGAGGCTTTACGAACGCGGATCTCAATCG-TGCACCACCGTA 1863
||||||| |||||||||||||||||||||||||||||| | | |||| | || || | |
Sbjct 1629 TGGGAGATTTTGGACTCGCGAGGCTTTACGAACGCGGAACGCTATCGCAG-ACAACAGCA 1687
Query 1864 GTCGTCGGCACGATTGGATATATGGCGCCGGAGCTAGCCCGCAACGGAAACTCCTCATCA 1923
|||| || || ||||| || |||||||| ||||| |||| ||||| ||| |||||||
Sbjct 1688 CTCGTTGGAACCATTGGGTACATGGCGCCAGAGCTCTCCCGAAACGGCAACCCCTCATCT 1747
Query 1924 GCTTCCGACGTTTTCGCGTTTGGCGTTTTGCTGTTAGAGATCGTCTCCGGGAGGAAACCG 1983
|| || || ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1748 GCGTCTGATGTTTTCGCGTTTGGCGTTTTGCTGTTAGAAATCGTCTCCGGGAGAAAACCG 1807
Query 1984 ACGGACT-CTGGGACCTTCTT-TATAGCCGACTGGGTTATGGAGCTACAAGCGAGCGGTG 2041
||||| | || | | |||||| | ||| ||| ||||||||||||||||||||||||||||
Sbjct 1808 ACGGATTCCT-GTAGCTTCTTCT-TAGTCGATTGGGTTATGGAGCTACAAGCGAGCGGTG 1865
Query 2042 AGATCCTCAGTGCGATCGACCCGAGACTCGGATCTGGTTACGACGAAGGAGAGGCAAGGC 2101
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1866 AGATCCTCAGCGCGATCGATCCGAGACTCGGATCTGGTTACGACGAAGGAGAGGCAAGGC 1925
Query 2102 TAGCTCTCGCCGTCGGTTTGCTCTGTTGTCACCACAAACCGGAA-TCTCGGCCGCTGATG 2160
| ||||| ||||| |||||||||||||| ||||| |||||| | |||||||||| ||||
Sbjct 1926 TTGCTCTTGCCGTGGGTTTGCTCTGTTGCCACCAAAAACCG-ACGTCTCGGCCGCCGATG 1984
Query 2161 AGAATGGTGCTCAGGTACCTGAACAGAGACGAAGATGTTCCTGAGATTCACGACAATTGG 2220
|||||||||||||||||||||||||||||||| ||||||||||||||| |||| | |||
Sbjct 1985 AGAATGGTGCTCAGGTACCTGAACAGAGACGAGGATGTTCCTGAGATTGACGATGAGTGG 2044
Query 2221 GGATATTCAGATTCTTCAAGAA-CAGATTTAGGATC 2255
||||||||| | |||||||||| || ||| |||||
Sbjct 2045 GGATATTCAAAGTCTTCAAGAAGCAAATTC-GGATC 2079
> Ahg353690 jgi|Araly1|353690|fgenesh1_pg.C_scaffold_7000863
Length=855
Score = 100 bits (54), Expect = 4e-20
Identities = 62/66 (94%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 2194 GATGTTCCTGAGATTCACGACAATTGGGGATATTCAGATTCTTCAAGAACAGATTTAGGA 2253
||||| ||||||||| | |||||||||||||||||||||||||||||||| |||||||||
Sbjct 664 GATGTCCCTGAGATTGAAGACAATTGGGGATATTCAGATTCTTCAAGAACCGATTTAGGA 723
Query 2254 TCGAAA 2259
||||||
Sbjct 724 TCGAAA 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90159609915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5