BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G01570.1

Length=644
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486918 jgi|Araly1|486918|fgenesh2_kg.6__52__AT5G01570.1           438    2e-122
  Ahg892051 jgi|Araly1|892051|Al_scaffold_0006_47                      115    4e-25 


> Ahg486918 jgi|Araly1|486918|fgenesh2_kg.6__52__AT5G01570.1
Length=432

 Score =  438 bits (237),  Expect = 2e-122
 Identities = 274/292 (94%), Gaps = 2/292 (1%)
 Strand=Plus/Plus

Query  1    ATGAGAGATCAGTCGAGGAATTTCGAAATGGTAATTTCATGGGGAGATGAATTGATCCAT  60
            ||| ||||||||| |||||||||||||||||  || ||||||||||| ||||||||||||
Sbjct  1    ATGGGAGATCAGTTGAGGAATTTCGAAATGGCGATATCATGGGGAGACGAATTGATCCAT  60

Query  61   GTTTTGGATGATAGGAAAGGATTTGACGTGTTGGTACAAACTCTCGAGCAACTGAGAGCT  120
            |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct  61   GTTTTGGATGATAGGAAAGGATTTGGTGTGTTGGTACAAACTCTCGAGCAACTGAGAGCT  120

Query  121  ATTCC-ATTCTCCTGCGACGAAGATTTTAAAGAGATACATGAATCTCTCCAAGATTTGCA  179
            | ||| ||||||||||||||| |||||||  |||||||||||||||||||||||||||||
Sbjct  121  A-TCCAATTCTCCTGCGACGACGATTTTAGCGAGATACATGAATCTCTCCAAGATTTGCA  179

Query  180  GAAGAAACTCGATGTTTGCAAGGAGAAGACAGATGAGGCAAATTCAGAGATTGCGGATGA  239
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct  180  GAAGAAACTCGATGTTTGCAAGGAGAAGACTGATGAGGCAAATTCAGAGATTGCTGATGA  239

Query  240  AGAAGAAATTGAGCGTCTTCAGAAAGAGCTTGATGAAGAGCTAGAACTAGAG  291
            |||||||| |||||||||||| |||||||||||||||||||||||||| |||
Sbjct  240  AGAAGAAACTGAGCGTCTTCATAAAGAGCTTGATGAAGAGCTAGAACTGGAG  291


 Score =  150 bits (81),  Expect = 1e-35
 Identities = 97/105 (92%), Gaps = 0/105 (0%)
 Strand=Plus/Plus

Query  357  GAACAAGCGGGACCAGTTGAGAACCGAGACAAAGCTTCCTATGTATGCTTCTGTCACTCG  416
            ||| |||| ||| |||||||||||||||| ||||||| ||||||||| |||||||||| |
Sbjct  291  GAATAAGCAGGAACAGTTGAGAACCGAGAAAAAGCTTTCTATGTATGTTTCTGTCACTAG  350

Query  417  AGTTATACCAAACATTGATGATTCATTGAAGACCTCAGGCTATAT  461
            ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  351  AGTTATACCAAACATTGATGATTCATTGAAGACCTCAGGCTGTAT  395


> Ahg892051 jgi|Araly1|892051|Al_scaffold_0006_47
Length=711

 Score =  115 bits (62),  Expect = 4e-25
 Identities = 70/74 (95%), Gaps = 0/74 (0%)
 Strand=Plus/Minus

Query  571  GTGATTGGAATAGCAAACTTGGGGACTGTTACTTAGCTTCTCCACTGAACTATTGGACCT  630
            |||||||| ||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct  708  GTGATTGGTATAGCAAACTTGGTGAATGTTACTTAGCTTCTCCACTGAACTATTGAACCT  649

Query  631  GCTTAGTGTCTCCA  644
            ||||||||||||||
Sbjct  648  GCTTAGTGTCTCCA  635



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23598085623


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5