BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G01570.1 Length=644 Score E Sequences producing significant alignments: (Bits) Value Ahg486918 jgi|Araly1|486918|fgenesh2_kg.6__52__AT5G01570.1 438 2e-122 Ahg892051 jgi|Araly1|892051|Al_scaffold_0006_47 115 4e-25 > Ahg486918 jgi|Araly1|486918|fgenesh2_kg.6__52__AT5G01570.1 Length=432 Score = 438 bits (237), Expect = 2e-122 Identities = 274/292 (94%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 1 ATGAGAGATCAGTCGAGGAATTTCGAAATGGTAATTTCATGGGGAGATGAATTGATCCAT 60 ||| ||||||||| ||||||||||||||||| || ||||||||||| |||||||||||| Sbjct 1 ATGGGAGATCAGTTGAGGAATTTCGAAATGGCGATATCATGGGGAGACGAATTGATCCAT 60 Query 61 GTTTTGGATGATAGGAAAGGATTTGACGTGTTGGTACAAACTCTCGAGCAACTGAGAGCT 120 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 61 GTTTTGGATGATAGGAAAGGATTTGGTGTGTTGGTACAAACTCTCGAGCAACTGAGAGCT 120 Query 121 ATTCC-ATTCTCCTGCGACGAAGATTTTAAAGAGATACATGAATCTCTCCAAGATTTGCA 179 | ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 121 A-TCCAATTCTCCTGCGACGACGATTTTAGCGAGATACATGAATCTCTCCAAGATTTGCA 179 Query 180 GAAGAAACTCGATGTTTGCAAGGAGAAGACAGATGAGGCAAATTCAGAGATTGCGGATGA 239 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 180 GAAGAAACTCGATGTTTGCAAGGAGAAGACTGATGAGGCAAATTCAGAGATTGCTGATGA 239 Query 240 AGAAGAAATTGAGCGTCTTCAGAAAGAGCTTGATGAAGAGCTAGAACTAGAG 291 |||||||| |||||||||||| |||||||||||||||||||||||||| ||| Sbjct 240 AGAAGAAACTGAGCGTCTTCATAAAGAGCTTGATGAAGAGCTAGAACTGGAG 291 Score = 150 bits (81), Expect = 1e-35 Identities = 97/105 (92%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 357 GAACAAGCGGGACCAGTTGAGAACCGAGACAAAGCTTCCTATGTATGCTTCTGTCACTCG 416 ||| |||| ||| |||||||||||||||| ||||||| ||||||||| |||||||||| | Sbjct 291 GAATAAGCAGGAACAGTTGAGAACCGAGAAAAAGCTTTCTATGTATGTTTCTGTCACTAG 350 Query 417 AGTTATACCAAACATTGATGATTCATTGAAGACCTCAGGCTATAT 461 ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 351 AGTTATACCAAACATTGATGATTCATTGAAGACCTCAGGCTGTAT 395 > Ahg892051 jgi|Araly1|892051|Al_scaffold_0006_47 Length=711 Score = 115 bits (62), Expect = 4e-25 Identities = 70/74 (95%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 571 GTGATTGGAATAGCAAACTTGGGGACTGTTACTTAGCTTCTCCACTGAACTATTGGACCT 630 |||||||| ||||||||||||| || ||||||||||||||||||||||||||||| |||| Sbjct 708 GTGATTGGTATAGCAAACTTGGTGAATGTTACTTAGCTTCTCCACTGAACTATTGAACCT 649 Query 631 GCTTAGTGTCTCCA 644 |||||||||||||| Sbjct 648 GCTTAGTGTCTCCA 635 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23598085623 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5