BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01580.1
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892051 jgi|Araly1|892051|Al_scaffold_0006_47 1144 0.0
> Ahg892051 jgi|Araly1|892051|Al_scaffold_0006_47
Length=711
Score = 1144 bits (619), Expect = 0.0
Identities = 682/711 (96%), Gaps = 9/711 (1%)
Strand=Plus/Plus
Query 1 ATGGCATCATATCAGAGG---CT----TT-G-CATCACAAGTTGCACAATCTTCTTCTGC 51
|||||||||||||||||| || || | ||||||||||| ||||||||||||||||
Sbjct 1 ATGGCATCATATCAGAGGCTTCTCAGGTTGGCCATCACAAGTTTCACAATCTTCTTCTGC 60
Query 52 CTCTTATCTCTGTCTTCAAGCCAGAAAGTTACACTAAGTTTATACTACGAAGCTCTATGC 111
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 61 CTCTTATCTCTGTCTTCAAGCCAGAAAGTCACACTAAGTCTATACTACGAAGCTCTATGC 120
Query 112 CCCTTCTGTGCAGAATTCATCGTCAACCGCTTGCCTAAGATCTTCGAAACCGGCTTAATC 171
|||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 121 CCCTACTGTGCAGAATTCATCGTCAATCACTTGCCTAAGATCTTCGAAACCGGCTTAATC 180
Query 172 TCATCCATTGATCTCCAGCTCGTTCCATGGGGCAACGCCGCTATCAGACCAGATGGAACC 231
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||
Sbjct 181 TCATCCATTGATCTCCAGCTCGTTCCATGGGGCAATGCCGTTATCAGACCAGATGGCACC 240
Query 232 ATTCTCTGCCAGCACGGAGAAGCTGAGTGTGCGCTCAACGCAATTCATGCCTGTGCAATA 291
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 241 ATTCTCTGCCAGCACGGAGAAGCTGAGTGTGCGCTCAACTCAATTCACGCCTGTGCAATA 300
Query 292 AACGCATACCCTGATGTGATGAAGCATTTTGGATACATCTACTGTACGGAACAGCTAGTC 351
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 AACGCATACCCTGATGTGATGAAGCATTTTGGATACATCTACTGTACGGAACGGCTAGTC 360
Query 352 TTGGAGAACAAACTTGAAAAATGGGCTGATTGTTTAGAAATGGTTGGATTGAGCAGAGCA 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGGAGAACAAACTTGAAAAATGGGCTGATTGTTTAGAAATGGTTGGATTGAGCAGAGCA 420
Query 412 GCGGTTGATTGTTACATTAACGGATACGGAAACCAGCTTGAACAGAGGTATGCTGAAGAA 471
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCAGTTGATTGTTACATTAACGGATACGGAAACCAGCTTGAACAGAGGTATGCTGAAGAA 480
Query 472 ACTTCTGAACTTTATCCAGCACATAGATTTGTACCATGGGTGGTTGTGAATAACCTACCA 531
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 481 ACTTCTGAACTTTATCCAGCACACAGATTTGTACCATGGGTGGTTGTGAATAACCAACCA 540
Query 532 CTTCAAGAGAACTACCAGAACTTTGTCATGTATGTATGCAATGCTTATGGAAGTAACCAA 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTTCAAGAGAACTACCAGAACTTTGTCATGTATGTATGCAATGCTTATGGAAGTAACCAA 600
Query 592 GTACCAGAAGCGTGCAGGATCCTCAACAGTTCGGTGGAGACACTAAGCAGGTCCAATAGT 651
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 601 GTACCAGAAGGGTGCAGGATCCTCAACAGTTCGGTGGAGACACTAAGCAGGTTCAATAGT 660
Query 652 TCAGTGGAGAAGCTAAGTAACAGTCCCCAAGTTTGCTATTCCAATCACTAA 702
|||||||||||||||||||||| || ||||||||||||| |||||||||||
Sbjct 661 TCAGTGGAGAAGCTAAGTAACATTCACCAAGTTTGCTATACCAATCACTAA 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25809214809
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5