BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01590.1
Length=1965
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939504 jgi|Araly1|939504|scaffold_600048.1 2547 0.0
> Ahg939504 jgi|Araly1|939504|scaffold_600048.1
Length=1606
Score = 2547 bits (1379), Expect = 0.0
Identities = 1543/1620 (95%), Gaps = 20/1620 (1%)
Strand=Plus/Plus
Query 56 GACTGTATGTGTGTTCAACAATGTCGTCGATGAACTTCAATCCATTTCAAAACTGGTTCG 115
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 GACTGTGTGTGTGTTCAACAATGTCGTCCATGAACTTCAATCCATTTCAAAACTGGTTCG 60
Query 116 AGAAACCACCGAACCCAGTCCCGTCCATCAACTTCGTCTCGCTCGCTGATTCCTTCTTTC 175
||||||| |||||||||||||| |||||||| |||||||||||||||||||| ||||| |
Sbjct 61 AGAAACCGCCGAACCCAGTCCCTTCCATCAATTTCGTCTCGCTCGCTGATTCATTCTTCC 120
Query 176 CCAAGTCGCAGTCTCCGAATTTCGCTTCGATTGGACTTCCAAAATTCTCAAAGAAGTCCC 235
|||||||||||||||||||||||||| ||||||| ||||| || ||||| |||||| |||
Sbjct 121 CCAAGTCGCAGTCTCCGAATTTCGCTGCGATTGGCCTTCCTAAGTTCTCCAAGAAGCCCC 180
Query 236 CAAAACCCGAAACAGCAGGAACCGACGAACCAGGACCGTACAAGCAAATAGCAGAGCAGT 295
||||||||| || | ||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 181 CAAAACCCG-AA-A-CAGGAACCGACGAGCCAGGACCGTACAAGCAAATCGCCGAGCAGT 237
Query 296 TCTTATGGGAGTGTGAGAACATACCGGATTACAGGCACACTCCAGAAGTGGATAAGCTTC 355
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 238 TCTTATGGGAGTGTGAGAACATACCGGATTACAGGCACACTCCAGAAGTGGATAAGATTC 297
Query 356 TCAACGAAGATCCAGTTTTCGAGAAGAAGGAGAATCCGAGCACAGAAGAGATTGAAGCTG 415
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 298 TCAACGAAGATCCAGTTTTCGAGAAGAAGGAGAATCCGAGCACAGACGAGATTGAAGCTG 357
Query 416 AGCAGAAATGGTGGGAGAGTTTTCGAGCGAGTCCTGTGGTTCAGTTTATGACTCGCGCCG 475
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGCAGAAATGGTGGGAGAGATTTCGAGCGAGTCCTGTGGTTCAGTTTATGACTCGCGCCG 417
Query 476 AGGAGATTGCCGACGATATGAACAAGATGGAGCTCGAGGATAACGACACGCCTTATCGGA 535
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AGGAGATTGCGGACGATATGAACAAGATGGAGCTCGAGGATAACGACACGCCTTATCGGA 477
Query 536 AAGAAGACAAGGATTACTGGAGAGCCATTCCTCATGTCCCGGGCTTTGACGGGAGGCCCA 595
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 478 AAGAAGACAAGGAATACTGGAGAGCCATTCCTCATGTGCCGGGCTTTGACGGGAGGCCGA 537
Query 596 TGCCTAGGAAGGCGATCAAATCAAAGGAAGAGAGTGATGATAAGTTTTGGGATTTCATGA 655
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TGCCTAGGAAGGCGATTAAATCAAAGGAAGAGAGTGATGATAAGTTTTGGGATTTCATGA 597
Query 656 AACAGTTTCTCTTCGGCCTCTGGGGTTTCCGTCAACGTCCTTACCCGCCTGGTCGACCCA 715
||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 598 AACAGTTCCTCTTCGGGCTCTGGGGTTTCCGGCAACGTCCTTACCCGCCGGGTCGACCCA 657
Query 716 TTGATGTGGCTCAGGCTATTGGTTACAAACGGCTCGAGAAGCGCTATTATGACTTCATAA 775
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 658 TAGACGTGGCTCAGGCTATTGGTTACAAACGGCTTGAGAAGCGCTATTATGACTTCATAA 717
Query 776 TGAAGACTGGTGGTTGGTGGTATAAAGACCGACTTGGCCGTTCTAGAGGCCCTTGTGAGA 835
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TGAAGACCGGTGGTTGGTGGTATAAAGACCGACTTGGCCGTTCTAGAGGCCCTTGTGAGC 777
Query 836 TTATAACCCTTAAGACGGCTTATGGAGCTGGAATAATTGACAGAGATACTTTCATTTGGG 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTATAACCCTTAAGACGGCTTATGGAGCTGGAATAATTGACAGAGATACTTTCATTTGGG 837
Query 896 GCGAGGACATGGATGAATGGGCGCCTATTCACATGGTTTACGGTTTGGAACCTGCAATTG 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GCGAGGACATGGATGAATGGGCGCCTATTCACATGGTTTACGGTTTGGAACCTGCAATTG 897
Query 956 CAACTTGGGAAGTGAGGCTTGGTGCAGCGGCAACGGCTTTCCTACACAAACTCCAGAAGG 1015
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 898 CCACTTGGGAAGTGAGGCTTGGTGCAGCGGCAACGGCTTTCCTTCACAAACTCCAGAAGG 957
Query 1016 GAATTCCACCGTGGGTTCCAT-TAAAGGGACGAGAGCCAAAAACATACAAGCAGCTTCAA 1074
|||| ||||| |||||||| | |||||||||||||||||||||||||||||||||| |||
Sbjct 958 GAATACCACCATGGGTTCC-TCTAAAGGGACGAGAGCCAAAAACATACAAGCAGCTCCAA 1016
Query 1075 AAAGAAGCTATTGAGAGTAAGAAACGCGACATGGCAGTGCTTGAAGCAAATGGTGGCGTT 1134
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1017 AAAGAAGCTATTGAGAGTAAGAAACGCGACATGGCAGTGCTCGAAGCAAATGATGGCGTT 1076
Query 1135 TGGCCTGGAGTCAGAACTCCCAGCCACGCTCTGTTTCTCTGGGCCAGTGGGTCTGAGTTA 1194
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1077 TGGCCTGGAGTCAGAACTCCCAGCCACGCTCTGTTTCTCTGGGCGAGTGGGTCTGAATTA 1136
Query 1195 ACAACTGTACTGGAATCTGATCACATGCCGAACAAGTTCATCCCCAAACAACTACGACTA 1254
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1137 ACAACTGTACTGGAATCTGATCACATGCCGAACAAGTTCATCCCCAAACAACTACGACAA 1196
Query 1255 GAGTTGGCCAAAGTAATACCAGGGTTAAGGCCATGGGAAGTGATAAGTATCGAGCAAGCT 1314
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1197 GAGCTGGCCAAAGTAATACCAGGGTTAAGGCCATGGGAAGTGATAAGTATAGAGCAAGCT 1256
Query 1315 ATGGATCAGATCAGCTATGGTGGAGAGTGGTACCGTGAGCCGCTTGGTACCTACACCACT 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 ATGGATCAGATCAGCTATGGTGGAGAGTGGTACCGTGAGCCGCTTGGTACCTACACCACT 1316
Query 1375 GGTCCTCCTTATATCAGAGAGTGGAATAGGAGTGTCATGAGGCTATTCCGGATTTTCTAC 1434
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GGTCCTCCTTACATCAGAGAGTGGAATAGGAGTGTCATGAGGCTATTCCGGATTTTCTAC 1376
Query 1435 AACCTGAGTGTTCGAGTAGGCCAGAAGCTGGAGAGGACAGTCCCGGGTTTTGACACTATA 1494
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1377 AACCTCAGTGTTCGAGTAGGCCAGAAGCTGGAGAGGACAGTCCCGGGGTTTGACACTATA 1436
Query 1495 ATGGACAAAGTTCAGAAAGATTATGACAAAAGGATTGCTCGGAGGATGAAGCGGAGAGAG 1554
||||| ||||||||||||||||| |||| |||||||||| ||||||||||||||||||
Sbjct 1437 ATGGAAAAAGTTCAGAAAGATTACGACACTCGGATTGCTCGAAGGATGAAGCGGAGAGAG 1496
Query 1555 GAGGAGCTGAGAGAAGAGGACCTGAAGCATTATTCCGGCCGTACCGATGAAGATgaggag 1614
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1497 GAGGAGCTGAGAAAAGAGGACCTGAAGCATTATTCCGGCCGTAGCGATGAAGATGAGGAG 1556
Query 1615 gaggaagaggaggaggaCGACGATAGCAACTCCAAA--A---AAGATTGAAGCAAAGTCT 1669
||| ||| | | ||| ||||||||||||||| | ||| ||||||||||||||
Sbjct 1557 GAG-AAG-G-A------CGATGATAGCAACTCCAAATGATTGAAG-TTGAAGCAAAGTCT 1606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73856985055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5