BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01600.1
Length=1421
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939503 jgi|Araly1|939503|scaffold_600047.1 1480 0.0
> Ahg939503 jgi|Araly1|939503|scaffold_600047.1
Length=966
Score = 1480 bits (801), Expect = 0.0
Identities = 913/966 (95%), Gaps = 12/966 (1%)
Strand=Plus/Plus
Query 443 CTACATTTTCCAACGATGGCCTCAAACGCACTCTCGTCTTTCACCGCCGCTAATCCCGCT 502
||||||||||| |||||||||||||| |||||||| || |||| ||||||| ||||||
Sbjct 6 CTACATTTTCCTACGATGGCCTCAAAGGCACTCTCTTCCTTCA---CCGCTAAGCCCGCT 62
Query 503 CTGTCTCCTAAGCCACTACTCCCTCACGGCTCTGCTTCTCCGTCGGTTTCTCTCGGCTTC 562
|||||||| ||||||||||||||||||||| | ||||||||| | ||||||||||| |||
Sbjct 63 CTGTCTCCCAAGCCACTACTCCCTCACGGCGCCGCTTCTCCGCCTGTTTCTCTCGGATTC 122
Query 563 TCCAGGAAAGTTGGCGGCGGCAGAGCAGT-G--GTCGTTGCAGCGGCTACGGTGGACACA 619
||||||||| ||||||||||||| |||| | |||||||| || ||||| || ||||||
Sbjct 123 TCCAGGAAAACTGGCGGCGGCAGAACAGTGGTCGTCGTTGCTGCCGCTACCGTTGACACA 182
Query 620 AACAACATGCCGATGACCGGAGTCGTGTTCCAGCCTTTCGAAGAGGTGAAGAAAGCCGAT 679
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 183 AACAACATGCCGATGACCGGAGTCGTGTTCCAGCCTTTCGAGGAGGTGAAGAAAGCCGAT 242
Query 680 CTGGCCATTCCAATCACATCTCATGCCTCTCTCGCTCGCCAGAGGTTTGCCGACGCTAGC 739
||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||
Sbjct 243 CTGGCCATTCCAATCACATCTCATGCCTCCCTCGCTCGCCAGAGGTATGCCGACACTAGC 302
Query 740 GAGGCAGTCATTAATGAGCAAATCAATGTGGAATACAACGTCTCCTATGTGTACCATTCA 799
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 GAGGCAGTCGTTAATGAGCAAATCAATGTGGAATACAACGTCTCCTATGTGTACCATTCA 362
Query 800 ATGTACGCATACTTTGACAGAGACAACGTTGCTATGAAGGGACTAGCCAAATTTTTCAAG 859
||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 363 ATGTACGCATACTTTGACAGAGACAACGTTGCTCTTAAGGGACTTGCCAAATTTTTCAAG 422
Query 860 GAATCAAGTGAGGAAGAGAGAGGGCATGCTGAGAAGTTTATGGAGTACCAGAACCAAAGA 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GAATCAAGTGAGGAAGAGAGAGGGCATGCTGAGAAGTTTATGGAGTACCAGAACCAAAGA 482
Query 920 GGAGGAAGAGTGAAACTCCACCCTATCGTCTCACCTATCTCAGAATTCGAACATGCTGAA 979
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 483 GGAGGAAGAGTGAAACTCCACCCAATCGTCTCACCTGTCTCAGAATTCGAACATGCTGAA 542
Query 980 AAAGGAGATGCTTTATATGCAATGGAGTTGGCTCTGTCTCTAGAGAAACTCACTAATGAG 1039
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 543 AAAGGAGATGCATTATATGCAATGGAGTTGGCTCTGTCTCTAGAGAAACTTACTAATGAG 602
Query 1040 AAGCTTCTAAACGTTCACAAAGTGGCCTCAGAGAACAATGATCCCCAGTTAGCTGATTTC 1099
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 603 AAGCTACTAAACGTTCACAGAGTGGCCTCAGAGAACAATGATCCCCAGTTAGCTGATTTC 662
Query 1100 GTTGAGAGTGAATTTCTGGGAGAGCAGATTGAAGCAATCAAGAAGATCTCAGACTACATC 1159
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GTTGAGACTGAATTTCTGGGAGAGCAGATTGAAGCAATCAAGAAGATCTCAGACTACATC 722
Query 1160 ACCCAGCTAAGGATGATCGGCAAAGGCCACGGAGTTTGGCATTTCGACCAGATGCTTCTG 1219
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 ACCCAGCTAAGGATGGTTGGCAAAGGCCACGGAGTTTGGCATTTCGACCAGATGCTTCTG 782
Query 1220 AACTAGACTTGGACCTCTATAAGTTCACTTTCAGATG---ACCAATGTTGGGGTTAAAAC 1276
||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 783 AACTAGACT-GGACCTCTATAAGTTCACTTTCAGATGTCGACCAATGTTGGGGTTCAAAC 841
Query 1277 AGAAGAACCCGAAGATTCTGTAAAAGCTTTAGATTG-AACATTATGGACTAATAAGATTG 1335
|||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct 842 AGAAGAACCCGAAGATTCTGTAAAAGCTTTAGGTTGGAAG-TTATGGACTAATAAGATTG 900
Query 1336 TAGTAGTAAGCTTTGTGTTCAAGATGGTTTTTGTAATAACTTCGTAAGCTTAATCAATGA 1395
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 901 TAGTAGTAAGCTTTGTGTTCAAGATGGTTTTTGTAATAACTTATTAAGCTTAATCAATAA 960
Query 1396 AGTTTT 1401
||||||
Sbjct 961 AGTTTT 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53135891775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5