BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G01610.1

Length=812
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486913 jgi|Araly1|486913|fgenesh2_kg.6__47__AT5G01610.1           852    0.0  


> Ahg486913 jgi|Araly1|486913|fgenesh2_kg.6__47__AT5G01610.1
Length=582

 Score =  852 bits (461),  Expect = 0.0
 Identities = 504/524 (96%), Gaps = 6/524 (1%)
 Strand=Plus/Plus

Query  81   GAGAGA-ATATGGATCAGATCTTCAACAAGGTTGGATCCTACTGGTTAGGCCAAAAGGCT  139
            |||||| | ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  1    GAGAGAGA-ATGGATCAGATCTTCAACAAGGTTGGATCCTACTGGTTAGGTCAGAAGGCT  59

Query  140  AACAAGCAGTTTGACTCCGTCGGCAACGATCTCAACTCGGTGTCAACGAGCATTGAAGGA  199
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  60   AACAAGCAGTTTGACTCCGTCGGCAACGATCTCAACTCCGTGTCAACGAGCATTGAAGGA  119

Query  200  GGAACAAAATGGTTGGTCAACAAAATCAAAGGGAAAATGCAGAAGCCGTTGCCTGAGTTA  259
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  120  GGAACAAAATGGTTGGTCAACAAGATCAAAGGGAAAATGCAGAAGCCGTTGCCTGAGTTA  179

Query  260  CTAAAAGAATATGATTTGCC-GATTGGAATCTTCCC-GGGAGATGCTACAAACTACGAGT  317
            |||||||| ||||||||||| | | ||||||||||| ||| |||||||||||||| ||||
Sbjct  180  CTAAAAGAGTATGATTTGCCTG-TGGGAATCTTCCCAGGG-GATGCTACAAACTATGAGT  237

Query  318  TCGATGAAGAGACAAAGAAACTAACCGTTTTGATCCCATCGATATGCGAAGTTGGATACA  377
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  238  TCGATGAAGAGACAAAGAAACTAACCGTTTTGATTCCATCGATATGCGAAGTTGGATACA  297

Query  378  AGGATTCATCAGTGTTGAAGTTCACAACAACAGTAACAGGACATCTTGAGAAAGGAAAGC  437
            |||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  298  AGGACTCATCAGTCTTGAAATTCACAACAACAGTAACAGGACATCTTGAGAAAGGAAAGC  357

Query  438  TAACAGATGTGGAAGGAATCAAGACAAAAGTAATGATATGGGTAAAAGTGACAAGCATAT  497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  358  TAACAGATGTGGAAGGAATCAAGACAAAAGTAATGATATGGGTAAAAGTGACAAGCATAT  417

Query  498  CTACAGATGCATCAAAGGTCTATTTCACTGCAGGAATGAAGAAGAGCAGAAGCAGAGATG  557
            || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  418  CTGCAGATGCATCAAAGGTCTACTTCACTGCAGGAATGAAGAAGAGCAGAAGCAGAGATG  477

Query  558  CTTATGAGGTTCAAAGAAATGGTCTCCGAGTCGATAAATTCTAA  601
            |||||||||||||||||||||| |||||||||||||||||||||
Sbjct  478  CTTATGAGGTTCAAAGAAATGGCCTCCGAGTCGATAAATTCTAA  521



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30002735679


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5