BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01620.3
Length=1550
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486912 jgi|Araly1|486912|fgenesh2_kg.6__46__AT5G01620.1 2158 0.0
> Ahg486912 jgi|Araly1|486912|fgenesh2_kg.6__46__AT5G01620.1
Length=1555
Score = 2158 bits (1168), Expect = 0.0
Identities = 1379/1474 (94%), Gaps = 41/1474 (3%)
Strand=Plus/Plus
Query 81 TGAAGAAGAAGAGACGAG---GTCTTCCTCTTA--CT-GTG-GTGGTGACATTTTCTCTA 133
|||||||||||||| ||| ||||||||||| || ||| ||||||||||||||||
Sbjct 91 TGAAGAAGAAGAGAAGAGTTCTTCTTCCTCTTACTCTGGTGCTTGGTGACATTTTCTCTT 150
Query 134 AAAAGAAAGTCTCCGATATGTCGCAGAGATGGAGTAGAAAGAAGAGTAGACTTCCATTAG 193
||| ||||||||| ||||||||||||||||| ||||| |||||| | ||||||||||
Sbjct 151 GAAA-CAAGTCTCCG--ATGTCGCAGAGATGGAGCAGAAAAAAGAGTCGGCTTCCATTAG 207
Query 194 CGGGTCTCCTCTTTATTCTCGTTGTCACCTTTATGATTCTCTTCAACGAGCGTAGCATTC 253
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 CGGGTCTCCTCTTTATGCTCGTTGTCACCTTTATGATTCTCTTCAACGAGCGTAGCATTC 267
Query 254 AGCAGATCCATCACCACGCCGCGAGTCACACTCAAAATCTCCGAGAACCTTCCACGTTCG 313
|||||||||| |||||||| || |||||| |||||||||||||||| |||| ||||||
Sbjct 268 AGCAGATCCACCACCACGCGGCCAGTCACGGTCAAAATCTCCGAGAAGCTTCGACGTTCA 327
Query 314 ATTTCGTCAAGCCTAATGTTCCTCGG--ATTAACTACTTGGGAGCTCATGGATTCTGTTT 371
|| |||||||||||||||||||| || ||| ||||||| || | | | | |
Sbjct 328 ATCTCGTCAAGCCTAATGTTCCT-GGCAATT-ACTACTT-GG-G---A--G---C---TC 372
Query 372 TGaaaaaaaTGCAGAGGTTTTGGATAGATTCAGCAAATGCAACTCGACGAAAGAGTACAG 431
| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 T--------T---GAGGTTTTGGATAGATTCAGCAAATGCAACTCGACGAAAGAGTACAG 421
Query 432 TGGGAAGAAAATCGGATGGGTTGACCCGTTTGAAGACCACCCGGGTCAAGTAACAAAGGA 491
||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||
Sbjct 422 TGGGAAGAAAATCGGATGGGTTGGCCCGTTTGAAG---ACCCGGGTCAAATAGCAAAGGA 478
Query 492 GGAGCAGAAATGTGATGTCTTTTCTGGGAAATGGGTCTTTGATAATTCATCATCATACCC 551
|| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 479 TGACCAGAAATGTGATGTCTTCTCTGGGAAATGGGTCTTTGATAATTCTTCATCATACCC 538
Query 552 TTTACACAAGGAATCTCAGTGTCCTTACATGTCCGACCAGTTGGCTTGTCAGAAGCATGG 611
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTTACACAAGGAATCTCAGTGCCCTTACATGTCCGACCAGTTGGCTTGTCAGAAGCATGG 598
Query 612 TAGGAAGGATTTGGAGTATCAGCATTGGAGATGGCAACCTCATGCCTGCAACTTGAAGAG 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TAGGAAGGATTTGGAGTATCAGCATTGGAGATGGCAACCTCATGCCTGCAACTTGAAGAG 658
Query 672 ATGGAATGCGATAGAAATGTGGGAGAAGCTGAGAGGAAAGAGATTGATGTTTGTTGGAGA 731
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATGGAATGTGACAGAAATGTGGGAGAAGCTGAGAGGAAAGAGATTGATGTTTGTTGGAGA 718
Query 732 CTCGTTAAACAGAGGCCAATGGATTTCAATGGTTTGTCTCTTACAGTCTGTCATTCCACG 791
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CTCATTAAACAGAGGCCAATGGATTTCAATGGTTTGTCTCTTACAGTCTGTCATTCCACG 778
Query 792 TGACAAGCAGTCTATGTCTCCTAACGCTCACCTCACCATTTTCAGGGCTGAGGACTACAA 851
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TGAGAAGCAATCTATGTCTCCTAACGCTCACCTCACCATTTTCAGGGCTGAGGACTACAA 838
Query 852 TGCCACAGTGGAGTTTCTCTGGGCACCGTTGCTCGTGGAGTCGAATTCTGATGACCCTGT 911
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 839 TGCCACAGTGGAGTTTCTCTGGGCACCGTTGCTCGTGGAATCGAATTCTGATGACCCTGT 898
Query 912 TAATCACAGATTGAGCGAGCGGATTATCCGACCCGATTCTGTTCTTAAACATGCATCAAA 971
||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 899 TAATCACAGATTGGGCGAACGCATTATCCGACCCGATTCTGTTCTTAAACATGCATCAAA 958
Query 972 GTGGCAACATGCTGATATTCTAATCTTCAACACCTACTTATGGTGGAGACAAGACTCTGT 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GTGGCAACATGCTGATATTCTAATCTTCAACACCTACTTATGGTGGAGACAAGACTCTGT 1018
Query 1032 CAAGCTCCGATGGAGCAGTGAAGAAAAAGGGTCATGCGAGGAGGTGAAGAGCGCCGAGGG 1091
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1019 CAAGCTCCGATGGAGCAGTGAAGAAAGAGGGTCATGCGAGGAGGTGAAGGGCGCCGAGGG 1078
Query 1092 AATGGAGATGGCAATGGATAGTTGGGGTGATTGGGTTGCTAACAATGTCGATCCAAACAA 1151
|||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1079 AATGGAGATGGCAATGAATACTTGGGGTGATTGGATTGCTAACAATGTCGATCCAAACAC 1138
Query 1152 AAAGCGAGTTTTCTTCGTTACAATGTCTCCTACACATCAATGGAGCCGAGAATGGAACCC 1211
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1139 AAAGCGAATTTTCTTCGTTACAATGTCTCCTACGCATCAATGGAGCCGAGAATGGAACCC 1198
Query 1212 GGGAAGCGAAGGAAACTGCTACGGGGAGAAGAAACCAATAGAGGAAGAGAGTTATTGGGG 1271
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1199 GGGAAGCGAAGGAAACTGCTACGGGGAGAAGAAACCGATAGAGGAAGAGAGTTATTGGGG 1258
Query 1272 AAGTGGGTCGGACATTCCGACAATGAGGATGGTGAAGAGAGTTTTGGAGAGATTGGGACC 1331
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1259 AAGTGGGTCGGACATTCCGACAATGAGGATGGTGAAGAGAGTTTTGGATAGATTGGGACC 1318
Query 1332 AAAGGTCTCAGTTATAAACATCACTCAGTTGTCTGAGTATCGAAAAGATGGTCATCCATC 1391
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 AAAGGTTTCAGTTATAAACATCACTCAGTTGTCTGAGTATCGAAAAGATGGTCATCCATC 1378
Query 1392 GGTGTACCGGAAATTCTGGGAACCTCTAAATGAAGACCGGTTGAAAAACCCGGCATCGTA 1451
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1379 AGTGTACCGGAAATTTTGGGAACCTCTAAACGAAGACCGGTTGAAAAACCCGGCATCGTA 1438
Query 1452 TTCTGACTGTACTCATTGGTGTGTACCTGGAGTTCCTGATGTCTGGAATCAATTGCTTTT 1511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TTCTGACTGTACTCATTGGTGTGTACCTGGAGTTCCTGATGTCTGGAATCAATTGCTTTT 1498
Query 1512 CCATTTTTTGTGAAAATGAAATGAATATAACCTT 1545
||| ||||||||||||||||||||||| ||||||
Sbjct 1499 CCAGTTTTTGTGAAAATGAAATGAATAAAACCTT 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58049533380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5