BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G01670.2 Length=1176 Score E Sequences producing significant alignments: (Bits) Value Ahg486904 jgi|Araly1|486904|fgenesh2_kg.6__38__AT5G01670.2 1171 0.0 > Ahg486904 jgi|Araly1|486904|fgenesh2_kg.6__38__AT5G01670.2 Length=1019 Score = 1171 bits (634), Expect = 0.0 Identities = 691/719 (96%), Gaps = 1/719 (0%) Strand=Plus/Plus Query 372 GGTGCACTGAGTTATCTCCTGAGAGAGTGCGTCCTGCTCTGCAAAACACCCTTAAAGAGC 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 270 GGTGCACTGAGTTATCTCCTGAGAGAGTGCGTCCTGCTCTGCAAAACACCCTTAAAGAGC 329 Query 432 TTCAATTAGAGTACCTTGATCTCTACTTGATTCACTGGCCTATCCGGCTAAGAGAAGGAG 491 |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 330 TTCAATTAGAGTACCTTGATCTATACTTGATTCACTGGCCTTTCCGGCTAAGAGAAGGAG 389 Query 492 CCAGTAAGCCACCAAAGGCAGGGGACGTTCTTGACTTTGACATGGAAGGAGTTTGGAGAG 551 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 390 CCAGTAAGCCACCAAAGGCAGGAGACGTTCTTGACTTTGACATGGAAGGAGTTTGGAGAG 449 Query 552 AAATGGAGAATCTTTCCAAGGACAGTCTCGTCAGGAATATCGGTGTCTGTAACTTTACAG 611 |||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 450 AAATGGAGAATCTTGCCAAGGACAATCTTGTCAGGAATATCGGTGTCTGTAACTTTACAG 509 Query 612 TCACTAAGCTCAATAAGCTGCTAGGATTTGCTGAACTGATCCCTGCCGTTTGCCAGATGG 671 |||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| Sbjct 510 TCACTAAGCTCAATAAGCTGCTAGAATTTGCTGAATTGATCCCTTCCGTTTGCCAGATGG 569 Query 672 AAATGCATCCTGGTTGGAGAAACGATAGGATACTCGAATTCTGCAAGAAGAATGAGATCC 731 ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 570 AAATGCATCCTGGTTGGAGAAACGATACCATGCTCGAATTCTGCAAGAAGAATGAGATCC 629 Query 732 ATGTTACTGCCTATTCTCCATTGGGATCTCAAGAAGGCGGGAGAGATCTGATACACGATC 791 |||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||| Sbjct 630 ATGTTACTGCCTATTCGCCGTTGGGATCTCAAGAAGGTGGGAGAGATCTGATACATGATC 689 Query 792 AGACGGTGGATAGGATAGCGAAGAAGCTGAATAAGACACCGGGACAGATTCTAGTGAAAT 851 ||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 690 AGACGGTGGATAGAATAGCAAAGAAGCTGAATAAGACACCGGGACAGGTTCTAGTGAAAT 749 Query 852 GGGGTTTGCAGAGAGGAACAAGTGTCATCCCTAAGTCATTGAATCCAGAGAGGATCAAAG 911 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 750 GGGGTTTACAGAGAGGAACAAGTGTCATCCCTAAGTCATTGAATCCAGAGAGGATCAAAG 809 Query 912 AGAACATCAAAGTGTTTGATTGGGTGATCCCTGAACAAGACTTCCAAGCTCTCAACAGCA 971 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 810 AGAACATCAAAGTGTTTGATTGGGTGATCCCTGAAAAAGACTTCCAAGCTCTCAACAGCA 869 Query 972 TCACTGACCAGAAACGAGTGATAGACGGTGAGGATCTTTTCGTCAACAAGACCGAAGGTC 1031 | |||||||||||||||||||| |||||||||||| | |||||||||||||||||||||| Sbjct 870 TTACTGACCAGAAACGAGTGATGGACGGTGAGGATATCTTCGTCAACAAGACCGAAGGTC 929 Query 1032 CATTCCGTAGTGTGGCTGATCTATGGGACCATGAAGACTAAACCGAACCCGAGAATCAA 1090 ||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| Sbjct 930 CATTCCGTAGTGTGGCTGATCTATGGGACCATGAAGATTAATC-GAACCCGAGAATCAA 987 Score = 455 bits (246), Expect = 4e-127 Identities = 266/276 (96%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 22 AATGGCACATGCCACGTTTACGTCGGAAGGGCAGAATATGGAGTCGTTTCGACTCTTGAG 81 ||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| Sbjct 1 AATGGCACATGCCACCTTTACGTCGGAAGGTCAGAATATGGAGTCGTTTCGGCTCTTGAG 60 Query 82 TGGCCACAAAATCCCAGCCGTTGGACTCGGCACGTGGCGATCTGGGTCTCAAGCCGCCCA 141 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 61 CGGCCACAAAATCCCAGCCGTTGGACTCGGCACGTGGCGATCTGGGTCTCAGGCCACCCA 120 Query 142 CGCCGTTGTCACTGCAATCGTCGAGGGTGGCTATAGGCACATAGATACAGCTTGGGAGTA 201 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CGCCGTTGTCACTGCACTCGTCGAGGGTGGCTATAGGCACATAGATACAGCTTGGGAGTA 180 Query 202 TGGTGATCAGAGAGAGGTCGGTCAAGGAATAAAGAGGGCGATGCACGCTGGCCTTGAAAG 261 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 181 TGGTGATCAGAGAGAGGTCGGTCAAGGAATAAAGAGGGCGATGCACACTGGCCTTGAAAG 240 Query 262 GAGGGACCTCTTTGTGACCTCGAAGCTTTGGTACAC 297 ||||||||||||||||||||||||||| |||| ||| Sbjct 241 GAGGGACCTCTTTGTGACCTCGAAGCTGTGGTGCAC 276 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43879477467 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5