BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01670.2
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486904 jgi|Araly1|486904|fgenesh2_kg.6__38__AT5G01670.2 1171 0.0
> Ahg486904 jgi|Araly1|486904|fgenesh2_kg.6__38__AT5G01670.2
Length=1019
Score = 1171 bits (634), Expect = 0.0
Identities = 691/719 (96%), Gaps = 1/719 (0%)
Strand=Plus/Plus
Query 372 GGTGCACTGAGTTATCTCCTGAGAGAGTGCGTCCTGCTCTGCAAAACACCCTTAAAGAGC 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 GGTGCACTGAGTTATCTCCTGAGAGAGTGCGTCCTGCTCTGCAAAACACCCTTAAAGAGC 329
Query 432 TTCAATTAGAGTACCTTGATCTCTACTTGATTCACTGGCCTATCCGGCTAAGAGAAGGAG 491
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 330 TTCAATTAGAGTACCTTGATCTATACTTGATTCACTGGCCTTTCCGGCTAAGAGAAGGAG 389
Query 492 CCAGTAAGCCACCAAAGGCAGGGGACGTTCTTGACTTTGACATGGAAGGAGTTTGGAGAG 551
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 390 CCAGTAAGCCACCAAAGGCAGGAGACGTTCTTGACTTTGACATGGAAGGAGTTTGGAGAG 449
Query 552 AAATGGAGAATCTTTCCAAGGACAGTCTCGTCAGGAATATCGGTGTCTGTAACTTTACAG 611
|||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 450 AAATGGAGAATCTTGCCAAGGACAATCTTGTCAGGAATATCGGTGTCTGTAACTTTACAG 509
Query 612 TCACTAAGCTCAATAAGCTGCTAGGATTTGCTGAACTGATCCCTGCCGTTTGCCAGATGG 671
|||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||
Sbjct 510 TCACTAAGCTCAATAAGCTGCTAGAATTTGCTGAATTGATCCCTTCCGTTTGCCAGATGG 569
Query 672 AAATGCATCCTGGTTGGAGAAACGATAGGATACTCGAATTCTGCAAGAAGAATGAGATCC 731
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 570 AAATGCATCCTGGTTGGAGAAACGATACCATGCTCGAATTCTGCAAGAAGAATGAGATCC 629
Query 732 ATGTTACTGCCTATTCTCCATTGGGATCTCAAGAAGGCGGGAGAGATCTGATACACGATC 791
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 630 ATGTTACTGCCTATTCGCCGTTGGGATCTCAAGAAGGTGGGAGAGATCTGATACATGATC 689
Query 792 AGACGGTGGATAGGATAGCGAAGAAGCTGAATAAGACACCGGGACAGATTCTAGTGAAAT 851
||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 690 AGACGGTGGATAGAATAGCAAAGAAGCTGAATAAGACACCGGGACAGGTTCTAGTGAAAT 749
Query 852 GGGGTTTGCAGAGAGGAACAAGTGTCATCCCTAAGTCATTGAATCCAGAGAGGATCAAAG 911
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 GGGGTTTACAGAGAGGAACAAGTGTCATCCCTAAGTCATTGAATCCAGAGAGGATCAAAG 809
Query 912 AGAACATCAAAGTGTTTGATTGGGTGATCCCTGAACAAGACTTCCAAGCTCTCAACAGCA 971
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 810 AGAACATCAAAGTGTTTGATTGGGTGATCCCTGAAAAAGACTTCCAAGCTCTCAACAGCA 869
Query 972 TCACTGACCAGAAACGAGTGATAGACGGTGAGGATCTTTTCGTCAACAAGACCGAAGGTC 1031
| |||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||
Sbjct 870 TTACTGACCAGAAACGAGTGATGGACGGTGAGGATATCTTCGTCAACAAGACCGAAGGTC 929
Query 1032 CATTCCGTAGTGTGGCTGATCTATGGGACCATGAAGACTAAACCGAACCCGAGAATCAA 1090
||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct 930 CATTCCGTAGTGTGGCTGATCTATGGGACCATGAAGATTAATC-GAACCCGAGAATCAA 987
Score = 455 bits (246), Expect = 4e-127
Identities = 266/276 (96%), Gaps = 0/276 (0%)
Strand=Plus/Plus
Query 22 AATGGCACATGCCACGTTTACGTCGGAAGGGCAGAATATGGAGTCGTTTCGACTCTTGAG 81
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1 AATGGCACATGCCACCTTTACGTCGGAAGGTCAGAATATGGAGTCGTTTCGGCTCTTGAG 60
Query 82 TGGCCACAAAATCCCAGCCGTTGGACTCGGCACGTGGCGATCTGGGTCTCAAGCCGCCCA 141
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 61 CGGCCACAAAATCCCAGCCGTTGGACTCGGCACGTGGCGATCTGGGTCTCAGGCCACCCA 120
Query 142 CGCCGTTGTCACTGCAATCGTCGAGGGTGGCTATAGGCACATAGATACAGCTTGGGAGTA 201
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGCCGTTGTCACTGCACTCGTCGAGGGTGGCTATAGGCACATAGATACAGCTTGGGAGTA 180
Query 202 TGGTGATCAGAGAGAGGTCGGTCAAGGAATAAAGAGGGCGATGCACGCTGGCCTTGAAAG 261
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 TGGTGATCAGAGAGAGGTCGGTCAAGGAATAAAGAGGGCGATGCACACTGGCCTTGAAAG 240
Query 262 GAGGGACCTCTTTGTGACCTCGAAGCTTTGGTACAC 297
||||||||||||||||||||||||||| |||| |||
Sbjct 241 GAGGGACCTCTTTGTGACCTCGAAGCTGTGGTGCAC 276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5