BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01680.1
Length=2355
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892041 jgi|Araly1|892041|Al_scaffold_0006_37 3387 0.0
> Ahg892041 jgi|Araly1|892041|Al_scaffold_0006_37
Length=2358
Score = 3387 bits (1834), Expect = 0.0
Identities = 2202/2376 (93%), Gaps = 39/2376 (2%)
Strand=Plus/Plus
Query 1 ATGAACAATAGTGTTACAAGTAATGGCACACATGAATTTGTATGCGAGGCATGGTTGGGA 60
||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1 ATGAACAATAGTGTT---AGAAATGGAACACATGAATTTGTATGTGAGGCATGGTTGGGT 57
Query 61 TCAAGCTCTGGCGGATTACTTAGAGGAGATGATCCATTGAAATATTCAActcctcttctt 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 58 TCAAGCTCTGGCGGATTACTTAGAGGAGATGATCCATTGAAATATTCGACTCCTCTTCTT 117
Query 121 cttcttctcatttctctcgtctcttctctctcttccgtcttccaagctcttctccgccct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 118 CTTCTTCTCATTTCTCTCGTCTCTTCTCTCTCTTCCGTCTTCCAAGCTCTTCTCCGTCCT 177
Query 181 ctcGCAAATGTCGACTTCGTCACTCAAATTCTGGCTGGGATATTCTTAGGACCCTCGGCT 240
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 178 CTCGCTAATGTCGACTTTGTCACTCAAATTCTGGCTGGGATATTCTTAGGCCCCTCGGCT 237
Query 241 TTGGGACAAAACATTGATTTAGTaaaaaaaTTATTCAACACAAGAAGCTAT-TTCATAAT 299
|||||||| |||||||||||||||| |||||| |||||||||||||||| | ||||||||
Sbjct 238 TTGGGACAGAACATTGATTTAGTAACAAAATTCTTCAACACAAGAAGCT-TCTTCATAAT 296
Query 300 AGAATCATTTGAGGCAATATCCTTCATGTTCATCTCATACATAAGCACGGCTCAAGTGGA 359
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 297 AGAATCATTTGAGGCAATCTCCTTCATGTTCATCTCATACATAAGCACAGCTCAAGTGGA 356
Query 360 CATGGGAGTTATAAAGCGAGGAGGCAAGCTAGCAATCATCAATGGATTATCTCTTTTTCT 419
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 357 CATGGGAGTTATAAAGCGAGGAGGCAAGCTCGCAATCATCAATGGTTTCTCTCTTTTTCT 416
Query 420 GTTTCCTTACGTGGTGGGCGCCATAGCATGTACAGTAATCACGAGCAACATCCGTGGAAC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GTTTCCTTACGTGGTGGGCGCCATAGCATGTACAGTAATCACGAGCAACATCCGTGGAAC 476
Query 480 CGTGGCGAAAAATAATCCCGAGCAGCTCCACAATTTACTAACAAACCAATCCGTAGTGTA 539
||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 477 CGTGGCGAAAAATAAGCCCGAGCAGCTCCACGATTTACTGACAAACCAATCCGTAGTGTA 536
Query 540 TTTTCAAGTGGCGTATTCGGTTTTGTCGAATCTCAAGATGCTGAACTCGGAGCCCGGAAG 599
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 537 TTTTCAAGTGGCGTATTCGGTTTTGTCAAATCTCAAGATGCTAAACTCGGAGCCCGGAAG 596
Query 600 GTTAGCCCTCTCCTCCATAATGGTGGCTAACTGCTTCGGCTGGGGTTTTTTCCTCCTTTT 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GTTAGCCCTATCCTCCATAATGGTGGCTAACTGCTTCGGCTGGGGTTTTTTCCTCCTTTT 656
Query 660 GATTACCTTTGACAGTTTCTTGCATCAAAATTACTCCAAGACCACTTATCTGCCTACCTT 719
||||||||| | ||||||||||| || |||||||||||| |||||||| ||||||||||
Sbjct 657 AATTACCTTTAATAGTTTCTTGCAACACAATTACTCCAAGGCCACTTATATGCCTACCTT 716
Query 720 CACAAAGGTACTACTGCTGGTTGGTATAGTAGTTGTGTGCCGACCAATATTCAACTGGAT 779
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 717 CACAAAGGTACTACTGCTTGTTGGTATAGTAGTTGTGAGCCGACCAATATTCAACTGGAT 776
Query 780 AGTGAAGAGAACCCCTGAAGGAAAGAAACTCAAGGCTTCCCATCTATGCACCATTTGCGT 839
|||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 777 AGTGAAGAGAACATCTGAAGGAAAGAAACTGAAGGCTTCCCATCTATGCACCATCTGCGT 836
Query 840 CATGTTGTGCACCGCCACTTTCCTGTCTGAAACTGTAGGGTTTCCTTACGTAGTCGGATC 899
||||||||||||||| ||||||||| ||||||| ||||||||||||||| ||||||||||
Sbjct 837 CATGTTGTGCACCGCTACTTTCCTGGCTGAAACCGTAGGGTTTCCTTACATAGTCGGATC 896
Query 900 CGTGGCTCTCGGTCTTGTCACTCCTAAGACGCCTCCTTTCGGTACTGGTCTCACTGACAA 959
||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 897 CGTAGCTCTCGGTCTTGTCACTCCTAAGACGCCTCCTCTCGGTACTGGTCTCACAGACAA 956
Query 960 GATCGGTAGCTTCTGTTATGCGGTTCTTATGCCGTGTTACGTCATCGGGATTGGTAACAA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GATCGGTAGCTTCTGTTATGCGGTTCTTATGCCGTGTTACGTCATCGGGATTGGTAACAA 1016
Query 1020 AGTGGATTTCTTTTCATTCAATCTACGCGACATCATATCTTTGGAGTTCCTTATCTTTAC 1079
||| ||||||||||||||| ||||||||||| ||||| ||||||||| ||| || |||
Sbjct 1017 AGTCGATTTCTTTTCATTCCATCTACGCGACGTCATAAGTTTGGAGTTGCTTTTCCTTAT 1076
Query 1080 CATTAGTGCTGCAAAGTTTGCCTCCATCGTCCTTCCATCGCTTTACTTCCAAGTTCCTAT 1139
|||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |
Sbjct 1077 CATTAGTGCTGCAAAGTTTGCCGCCATCCTCCTTCCATCGCTTTACTTCAAAGTTCCTTT 1136
Query 1140 ATCACACGCAGTGATTGTCGGCTTCATCGTCTGCATACAAGGGATCTACGATGTCCAAAT 1199
||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1137 ATCACACGCCGTGATTGTCGGGTTCATCGTCTGCATACAAGGGATCTATGATGTCCAAAT 1196
Query 1200 CTTCAAACAGCTCTTGAACTACAAGAATATAAGCCACGAGGCATTTGGGATAATGGTGAT 1259
|||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1197 CTTCAAACAGCTGTTGAACTACAAGAATATAAGCCAGGAAGCATTTGGGATAATGGTGAT 1256
Query 1260 CTCTGCCATGGTTCACTCGACCATTTTCACGGCCATTGTCAAAAATCT-CTACGGGTGGG 1318
|||||||||||||||||||||||||||| || |||| |||||||| || | |||| ||||
Sbjct 1257 CTCTGCCATGGTTCACTCGACCATTTTCTCGACCATAGTCAAAAACCTTC-ACGGCTGGG 1315
Query 1319 TGCAGAGGAAACACATCACTTACCGGCGACAAACCGTTCAACACTACGAACCAAACAAAC 1378
||||| |||||||||||||||| ||||||||||||||||| ||||||||||| |||| |
Sbjct 1316 TGCAGCGGAAACACATCACTTATCGGCGACAAACCGTTCAGCACTACGAACCGAACAGTC 1375
Query 1379 CTCTCAAGATCCTCACTTGTTTCTACCACCGTGAAACCGTTCCTCCCATCCTCACCGTCT 1438
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1376 CTCTCAAGATCCTCACTTGTTTCTACCACCGCGAAACCGTTCCTTCCATCCTCACCGTCT 1435
Query 1439 TGGAGCTCTCTACTTGTCCCTCGAGCGCCTCTTCGCACTCCATCGTTTCCGTTAATCTCG 1498
||||||||||| ||||| || ||||||||||||| ||||||||||||||| |||||||
Sbjct 1436 TGGAGCTCTCTTCTTGTATGTCAAGCGCCTCTTCGCTCTCCATCGTTTCCGTCAATCTCG 1495
Query 1499 AAGAGCTTGAGCAAAATAACGTCCCTCTCCTCATTCAACACCATCC-------A--G--- 1546
|||||||||||| ||||||||||||| || |||||||||||||| | |
Sbjct 1496 AAGAGCTTGAGCGCCATAACGTCCCTCTTCTTATTCAACACCATCCCGGTCCCATCGACC 1555
Query 1547 --G-T--C-ACAACGACGAGTCATCAACGTCTTCCAGCCGCAGAGATCAGATCTCCAAAG 1600
| | | ||||||||||||| |||| ||| ||||||||||||||||||||||||||||
Sbjct 1556 ATGCTGGCCACAACGACGAGTCCTCAATGTCCTCCAGCCGCAGAGATCAGATCTCCAAAG 1615
Query 1601 CCTTCGAGAAATTCCGAAGCGGCCACGATTTGCAAGAAAACGTTTCCGTTGAATGTTTCA 1660
||||||||||||| | |||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 1616 CCTTCGAGAAATTTCAAAGCGGACACGATTTACAAGAAAACGTTTCCGTCGAATGTTTCA 1675
Query 1661 CAGCAGTTGCACCGAGCAAGACGATGCACGAGGATGTATGTGCCTTGGCCTTCGAAAAAG 1720
|||||||||||||||||||||||||||||||||| |||||| |||||||||| || ||||
Sbjct 1676 CAGCAGTTGCACCGAGCAAGACGATGCACGAGGACGTATGTACCTTGGCCTTTGACAAAG 1735
Query 1721 AAACCGATCTCATCATTTTCGGGATGGCCGACGGGACTGCAGCAGAACGAAGGCTCTGTC 1780
|||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||
Sbjct 1736 GAACCGATCTCATCATTATCGGGATTGAGGACGGGACTGCAGCAGAACGAAGGCTCTGTC 1795
Query 1781 GCAACGTCCGGAATGCCTCACCTAGCTCCGTTGCGGTTCTAATGGACCAAGGACGGCTTC 1840
||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1796 GCAACGTCCTGAATGTCTCACCTTGCTCCGTTGCGGTTCTAATGGACCAAGGACGGCTTC 1855
Query 1841 CAGATTTCAAGAACATGGGAACGGCGATGAAGAACGGCTCAATGAGAATCAACATCTGTT 1900
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1856 CAGATTTCAAGAACATGGGAACCACGATGAAGAACGGCTCAATGAGAATCAACGTCTGTT 1915
Query 1901 CAATATTCCTCGGTGGAGCAGACGACCGTGAGACACTGGCCTTTGCGGTTAGAATGACAA 1960
| ||||||||||| |||||||||||||||||||| ||||| ||||||||||| || |||
Sbjct 1916 CGATATTCCTCGGGGGAGCAGACGACCGTGAGACGCTGGCGTTTGCGGTTAGGTTGTCAA 1975
Query 1961 ACCAACCTTACGTAAACCTAACCGTTCTTAAACTTGTCGACGGTGAAAACGTCTCACACC 2020
|||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1976 ACCACCCTTGCGTAAACCTAACCGTTCTTAAACTTGTCGACGGAGAAAACGTCTCACACC 2035
Query 2021 TAAACGACGTCGTAGAGAAAAGACTCGATTTCAGAACCATCGAAAAATTCCGTCAAGACA 2080
||||||||||| |||||| ||||||||||||||||||||| ||||| |||||||||||||
Sbjct 2036 TAAACGACGTCATAGAGAGAAGACTCGATTTCAGAACCATGGAAAAGTTCCGTCAAGACA 2095
Query 2081 CCATGAACAAACACAATGTCGCTTTACGAGAGGTATGGATAAAGGAAGCGAGTGATCTGG 2140
|||||||||||||||||||| |||||||||||| | | | ||||||||||||
Sbjct 2096 CCATGAACAAACACAATGTCACTTTACGAGAGG-A---A----G----CGAGTGATCTGG 2143
Query 2141 TGAACCTACTGAGAGAGGAAGGTAACAATTACGATCTGATCATGGTTGGAATCAGACACG 2200
|||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||
Sbjct 2144 TGAACCTACTGAGAGAAGAAGGTAACAATTACGATTTGATAATGGTTGGAATCAGACACG 2203
Query 2201 AAAAAAGTTT-CGAAGTGCTTCAAGGATTATCGGTATGGAGTGAGATCGAGGAGCTTGGA 2259
|| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2204 AAGAAAGTTTTC-AAGTGCTTCAAGGATTATCGGTATGGAGTGAGATCGAGGAGCTTGGA 2262
Query 2260 GAGATCGGAGATCTGCTCGTTTCCAGGGATCTCAAGCTTTCTGCATCGGTTTTGGCCGTA 2319
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||
Sbjct 2263 GAGATCGGAGATCTGCTCGTTTCCAGTGATCTCAAGCTCACTGCATCGGTTTTGGCTGTA 2322
Query 2320 CAACAACAACTCTCCTCTGTCGTCGAGGAGGTTTAA 2355
||||||||||||||||| ||||||||||||| ||||
Sbjct 2323 CAACAACAACTCTCCTCCGTCGTCGAGGAGGCTTAA 2358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88712180605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5