BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01690.1
Length=2238
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892040 jgi|Araly1|892040|Al_scaffold_0006_36 2032 0.0
> Ahg892040 jgi|Araly1|892040|Al_scaffold_0006_36
Length=2040
Score = 2032 bits (1100), Expect = 0.0
Identities = 1175/1212 (97%), Gaps = 2/1212 (0%)
Strand=Plus/Plus
Query 1028 TTGCCAAAATGATAGCCATTGCCTTGCCTTCCCTTTACTATAAAGTGCCTCTTTGGCACG 1087
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 830 TTGCCAAAATGATAGCCATTGCCTTGCCTTCCCTTTACTATAATGTGCCTCTTTGGCAGG 889
Query 1088 CCATTCTTGTCGGGTTTATCGTCAATATACAAGGACTTTACGACGTTCAAATATACAAAC 1147
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 890 CCATTCTTGTCGGGTTTATCGTCAATATCCAAGGACTTTACGACGTTCAAATATACAAAC 949
Query 1148 AGAATTTCAATTACACGAAAATATCAAGCAAATCTTTTGGAGCAATGGTGATGTCAGCAA 1207
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 AGAATCTCAATTACACGAAAATATCAAGCAAATCTTTTGGAGCAATGGTGATGTCAGCAA 1009
Query 1208 CGGTAAACTCGACAATTTTCATAGTGATAGTGAAGAAACTGTACCAAACCATGAGCAAAC 1267
|||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1010 CGGTAAACTCAACAATTGTCATAGTGATAGTGAAGAAACTGTATCAAACCATGAGCAAAC 1069
Query 1268 GCAACCCTTACAAGAGACGTACGGTGCAACACTGCCGAGTGGAGGCTCCCCTAAGGATCC 1327
||||||| |||||||||||||||||||| ||||||||||||| |||||| ||||||||||
Sbjct 1070 GCAACCCATACAAGAGACGTACGGTGCAGCACTGCCGAGTGGGGGCTCCGCTAAGGATCC 1129
Query 1328 TCACTTGTTTCCGGAACCGTGAGGCGGTCCGCCCGGTGCTTGACCTCGTCGAACTCTCTC 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 TCACTTGTTTCCGGAACCGTGAGGCGGTCCGCCCGGTGCTTGACCTCGTCGAACTCTCTC 1189
Query 1388 GTCCAGCCATCGGGTCTCCTCTCTCAGTCTTCGCGGTGAATCTAGAAGAGCTTAATAACC 1447
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1190 GTCCAGCCATCGGGTCTCCTCTCTCAGTCTTCGCTGTGAATCTAGAAGAGCTTAATAACC 1249
Query 1448 ATAGTCTTCCCCTCCTTATCCATCACACGCAAGAGATTAGTCCCTTCCTCGTGCCTAGCC 1507
|||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1250 ATAGTCTTCCTCTCCTTATTCATCACACGCAAGAGATTAGTCCCTTCATCGTGCCTAGCC 1309
Query 1508 GAAGGGACCAGATCGTTAAGGCCTTCCACAACTTCGAGAAGACTAATCAGGAGACCGTGT 1567
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 GAAGAGACCAGATTGTTAAGGCCTTCCACAACTTCGAGAAGACTAATCAGGAGACCGTGT 1369
Query 1568 TGATAGAGTGCTTCACGGCAGTGGCACCGCGAAAGACGATGCACGAGGACGTGTGTGCGA 1627
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1370 TGATAGAGTGCTTCACGGCAGTGGCGCCGCGAAAGACGATGCACGAGGATGTGTGTGCGA 1429
Query 1628 TTGCCTTTGACCAGGAAACAGATATTGTGATCCTAACTCTTGATGCCGGGATCGAGTTAT 1687
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1430 TTGCCTTTGACCAGGAAACAGATATTGTGATCCTAACTCTTGATGCCGGGATAGAGTCAT 1489
Query 1688 GGGAGAGGCTCCTGTGTCGTAATCTCCTGCACAACTGTCCCTGCTCTGTTGCGCTTTTCA 1747
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1490 GGGAGAGGCTCCTGTGTCGTAATCTCCTGCAAAACTGTCCCTGCTCCGTTGCGCTTTTCA 1549
Query 1748 TAGACAGAGGAAGGCTCCCAGATTTCAGGTTCGTTCCACTGAAAAAGCTTACCATCAATA 1807
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1550 TAGACAGAGGAAGGCTTCCAGATTTCAGGTTCGTTCCACTGAAAAAGCTCACCATCAATA 1609
Query 1808 T-TGGTGCTATCTTCTTAGGAGGACCAGATGACCGTGAAATGCTTGCGTATGCAACACGC 1866
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 TCTG-TGCTATCTTCTTAGGAGGACCAGATGACCGTGAAATGCTTGCGTATGCAACACGC 1668
Query 1867 TTAGCCAGCCATCCAAGCGTCGAGCTCCAAGTCTTCCGGCTCGTGGACCAGAACGGCGTC 1926
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1669 TTAGCCAGCCATCCAAGCGTCGATCTCCATGTCTTCCGGCTCGTGGACCAGAACGGCGTC 1728
Query 1927 TCTCCGCTCAGAGACATGGTCGAGAGGAATCACGACATGAGAGTCATCAACGTCTTCCGC 1986
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1729 TCTCCGCTCAGAGACATGGTCGAGAGGAACCACGACATGAGAGTCATCAACGTCTTCCGC 1788
Query 1987 AAAGAAAATTCCGAGAAAAACATCATCTTCAGAGAGGTAAGAATAGAGGAAGCAGTGAAT 2046
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1789 AAAGAAAATTCCAAGAAAAACATCATCTTCAGAGAGGTAAGAATAGAGGAAGCAGTGGAT 1848
Query 2047 CTACTGGATCTACTAAGGAAGGAAGGGGACGACTTCGATCTGATGATGGTCGGGATAAGA 2106
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1849 CTATTGGATCTACTAAGGAAGGAAGGAGACGACTTCGATCTGATGATGGTCGGGATAAGA 1908
Query 2107 CACGAAGAAAATCTTTTGATGTTGGAAGGATTGTCAGAATGGAGCGATATGAAGGAGTTA 2166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1909 CACGAAGAAAATCTTTTGATGTTGGAAGGATTGTCAGAATGGAGCGATATGAAGGAGTTA 1968
Query 2167 GGAGAGGTTGGAGATGTGTTGATCTCCAAAGATCTCGAGCTCTCTGTTTCGGTTCTCGCC 2226
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 GGAGAGGTCGGAGATGTGTTGATCTCCAAAGATCTCGAGCTCTCTGTTTCGGTTCTCGCA 2028
Query 2227 GTACAGCAATGA 2238
|| |||||||||
Sbjct 2029 GTCCAGCAATGA 2040
Score = 1194 bits (646), Expect = 0.0
Identities = 704/733 (96%), Gaps = 0/733 (0%)
Strand=Plus/Plus
Query 1 ATGGAAAATATAACCAAAACTTTTCAGTACGGAGGAGTTGATTGGCTTTGCGAGCCATGG 60
||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1 ATGGAAAATATCACCAAAACTTTTCAGTACGGAGGAGTCGAATGGCTTTGCGAGCCATGG 60
Query 61 GTAGGTGCAGGCTCTTTGGGGATTGGCCGGGGAGAGAATCCGCTCAAGTTTGCtcttcct 120
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTGGTGCAGGCTCCTTGGGGATTGGCCGGGGAGAGAATCCGCTCAAGTTTGCTCTTCCT 120
Query 121 cttcttctccttcagatttctgtcttttccatattttccgtatcttttcagtttcttctt 180
||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 121 CTTCTTCTCCTTCAGATATCTGTCTTTACCATATTTTCCGTATCTCTTCAGTTTTTTCTC 180
Query 181 cGGCCTTTTGGAAAATTTGCATTCCTCACTCAGATGCTGGCTGGGATCTGCTTAGGACCG 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGGCCTTTCGGAAAATTTGCATTCCTCACTCAGATGCTGGCTGGGATCTGCTTAGGACCG 240
Query 241 TCCGTTATAGGACGTAACAAACAGTACATGGCTACATTCTTCTACGCGAGAAGCGTGTAC 300
|||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||
Sbjct 241 TCCGTTATAGGACGTAACAAACAGTACATGTCTACATTTTTCTACACGAGAAGCGTGTAC 300
Query 301 ATAATCGAATCCTTCGAGGCCATATGTTTTCTCTTCATTTGCTACATCACAACATGTCAA 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 ATAATCGAATCCTTCGAGGCCATATGTTTTCTCTTCATTTGCTACATTACAACATGTCAA 360
Query 361 GTAGACACTAGGATGATAAAGAGAGTAGGCAAGTTAGCATTCATAAACGGCATCTTACTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTAGACACTAGGATGATAAAGAGAGTAGGCAAGTTAGCATTCATAAACGGCATCTTACTT 420
Query 421 TTCCTCATACCTTTCGTATGGGGCCAATTCGCGGCCATCTTGATCTCCAAGAGGCTCAAA 480
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 421 TTCCTTATACCTTTCGTATGGGGCCAATTCGCAGCCATCTTGATCTCCAAGAGGCTCGGA 480
Query 481 AGCGGGCCTGCGGGGATCCCTCCCGTGGAGTTCCACCATGTAGCGATCGTCCAGTCCACA 540
||||||| ||||||||||||||||||||||||||||| ||||||||||| | ||||||
Sbjct 481 GGCGGGCCAGCGGGGATCCCTCCCGTGGAGTTCCACCACATAGCGATCGTCGAATCCACA 540
Query 541 ATGTTTTTTCAGGTGGTTTACGGAGTCTTGTCGAGCCTAAAGATGTTGAACACTGAGCCA 600
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATGTTTTTTCAGGTGGTTTATGGAGTCTTGTCGAGCCTAAAGATGTTGAACACTGAGCCA 600
Query 601 GGGAGGTTAGCACTTGCATCCATGATGGTGCATGACTGCCTCTCTTGGTGTTTTTTCATG 660
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 GGGAGGTTAGCACTTGCCTCCATGATGGTGCATGACTGCCTCTCATGGTGTTTTTTCATG 660
Query 661 CTTAACATCGCCATTAAACTTAATGTTGACTTACCCAATAAAAATCGCGCTGCTTTCTTG 720
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 CTTAACATCGCCATTAAACTTAATGTGGACTTACCCAATAAAAATCGCGCTGCTTTCTTG 720
Query 721 TCCGTCTTACAGA 733
|||||||||||||
Sbjct 721 TCCGTCTTACAGA 733
Score = 171 bits (92), Expect = 3e-41
Identities = 97/99 (98%), Gaps = 1/99 (1%)
Strand=Plus/Plus
Query 888 CAGAATTTGTGGGTTTACCTTACTTCTTTGGTGCGGTCGTCTTAGGTCTAGCCACCCCAA 947
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 CAG-ATTTGTTGGTTTACCTTACTTCTTTGGTGCGGTCGTCTTAGGTCTAGCCACCCCAA 788
Query 948 AACGTCCGCCTCTAGGCACGGGACTGTCAGACAAAATCG 986
|||||||||||||||||||||||||||||||||||||||
Sbjct 789 AACGTCCGCCTCTAGGCACGGGACTGTCAGACAAAATCG 827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84255621940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5