BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01700.2
Length=1339
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486901 jgi|Araly1|486901|fgenesh2_kg.6__35__AT5G01700.2 2242 0.0
> Ahg486901 jgi|Araly1|486901|fgenesh2_kg.6__35__AT5G01700.2
Length=1340
Score = 2242 bits (1214), Expect = 0.0
Identities = 1299/1340 (97%), Gaps = 5/1340 (0%)
Strand=Plus/Plus
Query 1 TTCTTCCAAAGGACTTAGCCACACGTCGTGTTTCCAGATATTTCCTGTTTGTTTTTGTTT 60
||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 TTCTTCCAAAGAACATAGCCACACGTCGTGTTTCCAGAAATTTCCTGTTTGTTTTTGTTT 60
Query 61 CTTGTTGCGTACCAGTCTCTTGCAGTCTAAATGGGGGTCTGTTGTAGCAAGGGCACAGGG 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTGTTGCGTACCAGTCTCTGGCAGTCTAAATGGGGGTCTGTTGTAGCAAGGGCACAGGG 120
Query 121 ATAATTGTGGAGCATGGCGCTGATGATGGTAATGAATGTGGAGACGGAGAGGCTGAGGTT 180
|||||||||||||||||| | |||||| ||||||||| |||| ||||||||||||| |||
Sbjct 121 ATAATTGTGGAGCATGGCACGGATGATAGTAATGAATATGGAAACGGAGAGGCTGAAGTT 180
Query 181 AGGGACACAAATGATGGAGCTGTTGTAAGGACGCGTGGATCATCCAAACACGTTTCCATG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGGGACACAAATGATGGAGCTGTTGTAAGGACGCGTGGATCATCCAAACACGTTTCCATG 240
Query 241 TCAATCAAACAAGGGAAAAAAGGAATAAATCAAGACGCCATGACAGTCTGGGAGAACTTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCAATCAAACAAGGGAAAAAAGGAATAAATCAAGACGCCATGACAGTCTGGGAGAACTTT 300
Query 301 GGTGGGGAAGAAGATACGATCTTTTGCGGTGTATTTGACGGTCACGGTCCCATGGGTCAC 360
|||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 GGTGGGGAGGAAGATATGATCTTTTGCGGTGTATTTGACGGTCATGGTCCCATGGGTCAC 360
Query 361 AAGATTTCTCGTCACGTATGTGAAAATTTACCTTCGAGGGTCCATTCAAAAATTAGATCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGATTTCTCGTCACGTATGTGAAAATTTACCTTCGAGGGTCCATTCAAAAATTAGATCT 420
Query 421 TCCAAATCTGCCGGCGATGAAAACATAGAGAATAATAGTTCACAGAGTCAGGAGGAACTC 480
||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 421 TCCAAATCTGCCGGCAATGAAAACGTAGAGAATAATAGTTCACAGAGTCAGGAGGTACTC 480
Query 481 TTCCGTGAATTCGAGGACATTCTAGTGACATTCTTCAAGCAAATAGACAGTGAACTTGGT 540
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 TTCCGTGAATTTGAGGACATTCTAGTGACATTTTTCAAGCAAATAGACAGTGAACTTGGT 540
Query 541 CTCGACTCTCCTTATGATAGTTTTTGCAGCGGTACAACTGCTGTAACTGTCTTTAAACAG 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 CTCGACTCTCCTTATGATAGTTTTTGCAGCGGTACGACTGCTGTAACTGTCTTTAAACAG 600
Query 601 GCTGACTGTTTGGTGATCGCCAACTTGGGACATTCACGAGCCGTTCTTGGCACCCGAAGC 660
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 GCTGACTGTTTGGTGATCGCCAACTTGGGAGATTCACGAGCCGTTCTTGGCACCCGAAGC 660
Query 661 AAGAACAGTTTCAAAGCTGTCCAACTCACGGTTGATCTGAAACCCTGTGTCCAACGCGAA 720
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 661 AAGAACAGTTTCAAAGCTGTCCAACTCACGGTTGATCTGAAACCTTGTGTCCAACGCGAA 720
Query 721 GCAGAGAGAATAGTGTCATGCAAGGGAAGGGTGTTTGCTATGGAAGAGGAACCCGATGTG 780
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 GCAGAGAGAATAGTGTCATGCAAGGGAAGGGTGTTTGCTATGGAGGAGGAACCCGATGTG 780
Query 781 TATAGAGTGTGGATGCCTGATGATGATTGCCCGGGGCTCGCAATGTCAAGGGCTTTTGGT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TATAGAGTGTGGATGCCTGATGATGATTGCCCGGGGCTCGCAATGTCAAGGGCTTTTGGT 840
Query 841 GATTTCTGCCTCAAAGACTATGGACTTGTCTGCATTCCTGACGTCTTCTGCAGAAAAGTC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GATTTCTGCCTCAAAGACTATGGACTTGTCTGCATTCCTGACGTCTTCTGCAGAAAAGTC 900
Query 901 AGCAGAGAAGACGAGTTTGTGGTTCTAGCTACTGATGGGATTTGGGATGTTTTGTCAAAC 960
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 901 AGCAGAGAAGACGAGTTTGTGGTTCTAGCAACTGATGGGATTTGGGATGTTTTGTCAAAC 960
Query 961 GAAGAAGTGGTGAAAGTTGTAGGTTCCTGCAAGGACCGGTCAGTTGCAGCTGAGATGTTG 1020
||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||
Sbjct 961 GAAGAAGTGGTGAAAGTTGTAGGTTCCTGCAAGGACCGGACAATTGCAGCTGAGACGTTG 1020
Query 1021 GTTCAGCGAGCCGCTCGGACTTGGAGAACAAAGTTTCCAGCCTCAAAAGCTGATGACTGT 1080
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1021 GTTCAGCGAGCCGCTCGGACTTGGAGAACAAAGTTTCCAGCCTCTAAAGCTGATGACTGT 1080
Query 1081 GCGGTGGTGGTGCTTTACCTAAACCACCGGCCTTACCCAAGAGAAGGAAACGTGAGCCGA 1140
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GCGGTGGTGGTCCTTTACCTAAACCACCGGCCTTACCCAAGAGAAGGAAACGTGAGCCGA 1140
Query 1141 GCAATATCAACTATTTCCTGGAGATCAAATAAGAGCAATAACGAGTGTTATGGAGCCGCA 1200
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1141 GCAATATCGACTATTTCCTGGAGATCAAATAAGAGCAATAACGAGTGTTATGGAGTCGCA 1200
Query 1201 CCATTGTCACCATTGGGTCTATCCCAAAGGGTTTCATAGTAGGATAATTGTTACTGTTGT 1260
|||||||| |||||||||||| ||||||||||||||||||||||| ||||||| ||||||
Sbjct 1201 CCATTGTCGCCATTGGGTCTACCCCAAAGGGTTTCATAGTAGGATCATTGTTATTGTTGT 1260
Query 1261 TGTT-TCT-AA-CTGTTTAGTAAAATTTGAACCTGTTGAGGTGT--CGATATTACTCAAC 1315
|||| | | || |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1261 TGTTGTTTCAAACTGTTTAGTAAAATTTGAACCTGTTGAGGTGTGTCGATACTACTCAAC 1320
Query 1316 ATCAACTTTATTTGTGTGTG 1335
||||||||||||||||||||
Sbjct 1321 ATCAACTTTATTTGTGTGTG 1340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50093512938
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5