BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01712.1
Length=2123
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486898 jgi|Araly1|486898|fgenesh2_kg.6__32__AT5G01710.1 3011 0.0
> Ahg486898 jgi|Araly1|486898|fgenesh2_kg.6__32__AT5G01710.1
Length=2113
Score = 3011 bits (1630), Expect = 0.0
Identities = 1975/2137 (92%), Gaps = 41/2137 (2%)
Strand=Plus/Plus
Query 4 ttttccgattcctctcaatctctctttcttcttc-tttttct-ctcgctccaaattccat 61
|||||||||||| ||| ||||||||||||||||| ||||| | ||| ||||| |||||||
Sbjct 1 TTTTCCGATTCCCCTCTATCTCTCTTTCTTCTTCATTTTTTTGCTCACTCCAGATTCCAT 60
Query 62 gtctgtgtctctttcctcctccGCCGTATAATTCGCCGGAAAAATTATCTCCC-T-TTGA 119
|||| | |||| || ||||||||||||| | ||||||||||| || ||| | ||
Sbjct 61 GTCTCTATCTC-TT--TCCTCCGCCGTAT-AGCCGCCGGAAAAA--CTC-CCCTTGTTTT 113
Query 120 TTTT-CGAACACC-TCCGCGAACTATGCGCTTCTTTTGCCCTTATCCTCCAACTACTTGT 177
|||| |||| ||| | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 114 TTTTCCGAAAACCGT-GGCGAACTATGCGCTTCTTTTGCCGTTATCCTCCAACTACTTGT 172
Query 178 CGGATCTGCAATTCTTCTTGTCAATTCCCAACCCTAATCGGAGCTAATCACACCTCTGCT 237
| |||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 173 CCGATCTGCAATTCGTATTGTCTATTCCCAACCCTAATCGGAGCTAATCACACCTCTGCT 232
Query 238 CGTTTCTCTTCTCGTTAGTCTCTGCTCCATCTCCTCCTCAGATTTAGGGAT-ATTTGCTT 296
| |||||||||||||||||| || |||| ||||||||||||||||| | |||| |
Sbjct 233 AGGTTCTCTTCTCGTTAGTCTTTGTTCCA---CCTCCTCAGATTTAGGGTTGATTTAAGT 289
Query 297 CCAATTTAACAAACAAACCAAGAGCTATTCTTTCGTTCTTTATTCTCTCCGTCTTGTAAA 356
| || ||||||| ||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 290 CTAA-GAAACAAACCTACCGAGAGCTATTCTTTCGTTCTTTATTCTCTCTGTCTTGTAAA 348
Query 357 GTAGTTTTAGCAGTGAGATAC--ATACA-AATGGAGACTTCCATGGGGAAACCCAGCTTC 413
| ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||
Sbjct 349 GCAGTTTTAGCAGTGAGATACATATATACAATGGAGACTTCCATGGGGAAACCCAGCTTC 408
Query 414 TTACGGAATATAATGGTTCGCGTGCTTCTCTTTGGTGTTCTTATCATCGTTGTGAGATTT 473
|| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 409 TTGCGGAATATTATGGTTCGCGTGCTTCTCTTTGGTGTTCTTATCATCGTTGTCAGATTT 468
Query 474 GCTTATGTTGTCACCATCACCGGTGAATCATGCAATCGCGGCGACTTCTGCTTCTTCTCT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 GCTTATGTTGTCACCATCACCGGTGAATCATGCAATCGCGGCGACTTCTGCTTCTTCTCT 528
Query 534 CTCCCTGAGAATCTCAACTTTGTCATCTCCGGTGCTGCCTCCGGCTCTTCTGCTATCGAC 593
||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||
Sbjct 529 CTCCCTGAGAATCTCAACTTTGTCATCTCCGGTCCTGGCTCCGGCGCTTCTGCTATCGAC 588
Query 594 GCCATCAGATCTACTTCCCCTGGGGATGATCTCTACACCACCAGGGATTGGATCAAATCC 653
||||||||||||||||| || || |||||||| || |||| |||||||||||||||| ||
Sbjct 589 GCCATCAGATCTACTTCTCCAGGCGATGATCTGTATACCAGCAGGGATTGGATCAAAGCC 648
Query 654 GTTCAGTTTTACTCCTCCATCTTCCAGGATCTGATCGCCGACGGTTATCTATCGCCTGAA 713
||||||||||||||||||||||| |||||||||||||||||||||||||| || || |||
Sbjct 649 GTTCAGTTTTACTCCTCCATCTTTCAGGATCTGATCGCCGACGGTTATCTCTCCCCGGAA 708
Query 714 TCGAAGACGCTTTGTGTAGAGACGGCGATTGGACAAGAGGTTCACTCGCTCAGAGAGATT 773
||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 709 TCGAAGACGCTTTGTGTGGAAACGGCGATTGGACAAGAGGTTCACTCACTCAGAGAGATT 768
Query 774 GGGGTGAAGAACTCCGTCGGGATCTCTAAGAAAGCTTCTAGGCCGTTGGTGGTTAGAGGC 833
||||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||||||
Sbjct 769 GGGGTCAAGAACTCCGTCGGGATCTCTAAGAAGGCTTTTAGGCCGTTGGTGGTCAGAGGC 828
Query 834 GAGGGACATGCTATTCCCTTTGAGGATAACGCTTTCGATTTTGTATTCTCCGGTGGTGAC 893
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 829 GAGGGACATGCTATTCCCTTCGAGGATAACGCTTTCGATTTTGTCTTCTCCGGTGGTGGT 888
Query 894 CGCCTTGGGAAGTCGTTGAAGCAGTTGGAATTCGCCGATGAGATTACTCGAACACTGAAA 953
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 889 CGCCTCGGGAAGTCGTTGAAGCAGTTGGAATTCGCCGACGAGATTACTCGAACACTGAAA 948
Query 954 CCCGAAGGGTTTGCGGTGGTTCATGTTGGGGCTACAGATACGTACAGTTTCAATTCATTC 1013
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 CCCCAAGGGTTTGCGGTGGTTCATGTTGGGGCTACAGATACGTACAGTTTCAATTCATTC 1008
Query 1014 CTTGATTTGTTTAATTCTTGCAGATTGGTGAAGATGCGTGATATCGATGGTTTTGATCCT 1073
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1009 CTTGATTTGTTTAATTCTTGCAGATTGGTGAAGATGCGTGATATTGATGGTTTTGATTCT 1068
Query 1074 TCGATGCCTCATATCAGAGAATTTGTTATTCAGAAATACTCAGAGATTGATGGTGGTGGT 1133
|| |||||||||||||||||||| |||||||| ||||||||||| ||||||||| |
Sbjct 1069 TCAATGCCTCATATCAGAGAATTCGTTATTCAAAAATACTCAGATATTGATGGTCAT--- 1125
Query 1134 CATCACC--ACCGTGGT--GGTGGTGATTCTGGTGGAAAGTGCTGGATTCCGGGTTACAA 1189
||||||| | | | |||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1126 CATCACCGGAA-GAATTCCGGTGATGATTCTGGTGGAAAGTGCTGGATTCCCGGTTACAA 1184
Query 1190 AAGAGATTTGATTCGGGATGCAGAGCCACTGATTCAAGAGGAGCCTCTTAAGCCATGGAT 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AAGAGATTTGATTCGGGATGCAGAGCCACTGATTCAAGAGGAGCCTCTTAAGCCATGGAT 1244
Query 1250 TACACTTAAGAGGAACATCAAGAATATTAAATATGTGCCTTCTATGGTTGATATACGTTT 1309
||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1245 TACCCTTAAGAGGAACATTAAGAATATTAAATATGTGCCTTCTATGGTAGATATACGTTT 1304
Query 1310 CAAGAGTAGATACGTTTACGTTGATGTTGGTGCTAGAAGTTATGGATCCAGTATTGGGAG 1369
|||||||||||| || ||||||||||||||| || ||||||| || ||||||||||||||
Sbjct 1305 CAAGAGTAGATATGTATACGTTGATGTTGGTTCTCGAAGTTACGGGTCCAGTATTGGGAG 1364
Query 1370 TTGGTTCAAGAAAGAGTACCCTAAGCAGAACAAAACTTTTGATGTTTTCGCCATTGAGGC 1429
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1365 TTGGTTCAAGAAAGAGTACCCTAAGCAGAACAAAACTTTCGATGTTTTCGCCATTGAGGC 1424
Query 1430 TGACAAAGCCTTTCACGAAGAGTATAAGATAAAGAAGAAGGTGAACCTGTTGCCATACGC 1489
|||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 1425 CGACAAAGCCTTTCATGAAGAGTATAAGATTAAGAAAAAGGTGAACCTATTGCCATACGC 1484
Query 1490 AGCGTGGGTGAGGAACGAGACGTTATCGTTTGAGATCAATCACGATCCGGGAAAGGAAGT 1549
||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 1485 AGCATGGGTGAGGAACGAGACATTATCATTTGAGATAAATCACGATCCGGGAAAGGAAGC 1544
Query 1550 GGAAGCCAAAGCAAAGGGCAGGGGGATGGGCAGAATCCAGCCGGTTAAAAAGTCTGACTC 1609
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1545 GGAAGCCAAAGCAAAGGGCAGGGGAATGGGCAGAATCCAGCCGGTTAAAAAGTCTTCCTC 1604
Query 1610 GAGTGACTTAGCTGGAGAGGTGAATTTGATTCAAGGGTTTGATTTCGCTGACTGGTTGAA 1669
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1605 CAGTGACTTAGCTGGAGAGGTCAATTTGATTCAAGGGTTTGATTTCGCTGACTGGTTGAA 1664
Query 1670 GAAGAGTGTGAGAGAGAGGGACTTTGTTGTGATGAAGATGGATGTTGAAGGAACCGAATT 1729
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1665 GAAGAGTGTGAGGGAGAGGGACTTTGTTGTGATGAAGATGGATGTGGAAGGAACCGAATT 1724
Query 1730 CGATCTGATCCCGAGGCTAATCAAGACAGGAGCGATTTGTCTAATAGATGAGTTGTTCCT 1789
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1725 CGATCTGATCCCGAGGCTAATCAAGACAGGAGCGATTTGTCTAATCGACGAGTTGTTCCT 1784
Query 1790 TGAATGCCATTACAACAGGTGGCAGAGATGTTGTCCTGGTCAAAGGAGCCAAAAGTACAA 1849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1785 TGAATGCCATTACAACAGGTGGCAGAGATGTTGTCCTGGTCAAAGGAGCCAAAAGTACAA 1844
Query 1850 CAAGACTTATAACCAATGCTTAGAGCTCTTCAATTCGCTCAGACAAAGAGGGGTGCTTGT 1909
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1845 CAAGACTTATAACCAATGCTTAGAGCTCTTCACTTCGCTCAGACAAAGAGGGGTGCTTGT 1904
Query 1910 CCATCAATGGTGGTAATGGTTAGGATGCTGCATAAAAGTCTCCTTCTTCTA-TGCAT-TT 1967
|||||| |||||||||||||||||||||||||||| |||||||||||| | | | ||
Sbjct 1905 CCATCAGTGGTGGTAATGGTTAGGATGCTGCATAA---TCTCCTTCTTCTTCTTCTTCTT 1961
Query 1968 GG-TGAAAAATGTACTTTCTTCTTCTAGAATATATAAAGCGGGATATTGTAGGTTTCTAT 2026
|| |||||||||||||||||||||||||||| ||| ||| |||||||||||||||||
Sbjct 1962 CTATGCAAAATGTACTTTCTTCTTCTAGAATATA-AAA-CGG-ATATTGTAGGTTTCTAT 2018
Query 2027 TAAAAATACGTTGTCTGTGCTGAAATTCCCTTTTACTGTAAGAAAAAAGAAGTTTAGCTT 2086
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2019 TAAAAATACGTTGTCTATGCTGAAATTCCCTTT-ACTGTAAGAAAAAAGAAGTTTAGCTT 2077
Query 2087 TAAATGGAAATTTGAGTTTCTTTTACGCTCGCAACTG 2123
||||| ||||||||||||||||||| ||||||||||
Sbjct 2078 GAAATG-AAATTTGAGTTTCTTTTACTCTCGCAACTG 2113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79875243765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5