BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01720.1
Length=2485
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486896 jgi|Araly1|486896|fgenesh2_kg.6__30__AT5G01720.1 3349 0.0
> Ahg486896 jgi|Araly1|486896|fgenesh2_kg.6__30__AT5G01720.1
Length=2296
Score = 3349 bits (1813), Expect = 0.0
Identities = 2138/2291 (93%), Gaps = 37/2291 (2%)
Strand=Plus/Plus
Query 90 CAGATGAAGAAGGTTAAACAGATTCGTGTCTTAAAGCCTTTCGATCTTCTCTCGGAAGAG 149
||||||||||||||||| |||||||| |||| ||||||||||||||||||||| ||||||
Sbjct 34 CAGATGAAGAAGGTTAAGCAGATTCGCGTCTCAAAGCCTTTCGATCTTCTCTCCGAAGAG 93
Query 150 CTCGTCTTTATCATCCTTGACCTCATCTCTCCCAACCCTTCCGATCTCAAATCCTTCTCT 209
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 94 CTCGTCTTCATCATCCTTGACCTCATCTCTCCCAACCCTTCCGATCTCAAATCCTTCTCT 153
Query 210 CTTACTTGCAAAT-CTTTCTACCAGCTCGAGTCCAAGCACCGCGGATCCTTAAAACCTCT 268
||||||||||||| ||| ||||| |||||||||||||||||| ||||||||||||||||
Sbjct 154 CTTACTTGCAAATGGTTT-TACCAACTCGAGTCCAAGCACCGCCGATCCTTAAAACCTCT 212
Query 269 CCGCTCCGACTATCTCCCTCGCATCTTGACTCGTTACCGGAACACCACCGATCTCGATCT 328
|||||||||||| ||||||||||||||||| |||| ||| ||||||||||||||||||||
Sbjct 213 CCGCTCCGACTACCTCCCTCGCATCTTGACCCGTTTCCGCAACACCACCGATCTCGATCT 272
Query 329 TACCTTCTGCCCGCGTGTCACTGACTACGCGCTTAGCGTCGTTGGCTGTCTCTCCGGACC 388
|||||||||||| || |||||||||||||| || ||||||||||||||||||| ||| ||
Sbjct 273 TACCTTCTGCCCTCGCGTCACTGACTACGCCCTCAGCGTCGTTGGCTGTCTCTGCGGTCC 332
Query 389 TACGCTTCGCTCCCTCGACCTCTCGCGCTCTGGCTCCTTCTCCGCCGCGGGACTACTGCG 448
|||||| | |||||||||||| || ||||||| |||||||||||||||||| || ||| |
Sbjct 333 TACGCTCCACTCCCTCGACCTTTCTCGCTCTGCCTCCTTCTCCGCCGCGGGGCTCCTGAG 392
Query 449 ATTGGCCCTCAAATGTGTCAATTTAGTCGAGATTGACCTGTCCAATGCGACGGAGATGAG 508
| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 393 ACTGGCCGTCAAATGTGTCAATTTAGTCGAGATTGACCTGTCGAATGCGACGGAGATGAG 452
Query 509 AGACGCCGATGCTGCGGTGGTGGCGGAGGCGAGGAGTCTGGAGAGGCTGAAGCTGGGCAG 568
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 453 AGACGCCGATGCGGCGGTGGTGGCGGAGGCGAGGAGTCTGGAGAGGCTGAAGCTGGGGAG 512
Query 569 ATGCAAGATGCTGACGGACATGGGAATCGGATGTATAGCAGTTGGATGTAAGAAGCTCAA 628
|||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 513 ATGCAAGATGCTCACGGACATGGGAATCGGATGCATCGCAGTTGGATGCAAGAAGCTCAA 572
Query 629 TACGGTTAGCTTGAAATGGTGTGTTGGCGTCGGAGATTTAGGGGTTGGCTTGCTTGCCGT 688
| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 573 CATGGTTAGCTTGAAATGGTGTGTTGGCGTCGGAGATTTAGGCGTCGGCTTGCTTGCCGT 632
Query 689 CAAATGCAAGGACATTCGCACCTTAGACCTCTCCTACTTGCCGATCACAGGAAAGTGTTT 748
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 633 CAAATGCAAGGACATTCGCACCTTAGACCTCTCCTACTTGCCGATTACAGGCAAGTGTTT 692
Query 749 ACATGACATTCTGAAACTTCAACACCTTGAAGAACTTCTTCTAGAAGGGTGCTTTGGAGT 808
|||||||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||
Sbjct 693 ACATGACATTTTGAAACTCCAACACCTTGAAGAACTTTTTCTAGAAGGGTGCTTCGGAGT 752
Query 809 AGATGATGACAGTCTTAAATCACTCAGACATGATTGCAAGTCATTGAAGAAGCTTGATGC 868
||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||
Sbjct 753 AGATGATGACAGTCTTAAATCTCTCAGACATGATTGCAAGACATTGAAGAAGCTCGATGC 812
Query 869 ATCCAGCTGCCAGAATTTAACTCATAGAGGTTTAACCTCACTTTTAAGCGGGGCAGG-AT 927
|||||||||||||||||||||||||| |||||||||||||||||||||||| || || ||
Sbjct 813 ATCCAGCTGCCAGAATTTAACTCATAAAGGTTTAACCTCACTTTTAAGCGGAGC-GGCAT 871
Query 928 ATCTTCAGCGACTTGATCTATCACACTGTTCTTCTGTGATATCATTGGATTTTGCGAGTA 987
||| |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 872 GTCTCCAGCGACTGGATCTAGCACATTGTTCTTCTGTGATATCATTGGATTTTGCGAGTA 931
Query 988 GCTTAAAGAAGGTTTCAGCATTACAGTCGATCAGGTTGGATGGTTGTTCTGTTACGCCTG 1047
||||||||||||||||||| |||||||| ||| |||||||||||||||||||||| ||||
Sbjct 932 GCTTAAAGAAGGTTTCAGCGTTACAGTCAATCGGGTTGGATGGTTGTTCTGTTACACCTG 991
Query 1048 ATGGTTTGAAGGCGATAGGCACATTGTGCAATTCCCTGAAAGAGGTTAGCCTAAGCAAAT 1107
| ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 992 ACGGTTTAAAGGCGATAGGCACATTGTGCAATTCCCTGAATGAGGTTAGTCTAAGCAAGT 1051
Query 1108 GCGTGAGCGTAACTGATGAAGGTCTTTCTTCTCTAGTAATGAAACTGAAAGACCTCAGAA 1167
| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1052 GTGTGAGCGTATCTGATGAAGGTCTCTCTTCTCTAGTAATGAAACTGAAAGACCTCAGAA 1111
Query 1168 AACTTGACATCACATGTTGCCGGAAACTAAGTAGAGTTTCAATCACCCAAATCGCCAATT 1227
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1112 AACTTGACATCACATGTTGTCGGAAACTAAGTGGAGTTTCAATCACCCAAATCGCCAATT 1171
Query 1228 CGTGTCCTTTACTAGTCTCTTTGAAGATGGAGTCTTGTTCTCTTGTTTCCAGAGAAGCCT 1287
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 CATGTCCCTTACTAGTCTCTTTGAAGATGGAGTCTTGTTCTCTTGTTTCCAGAGAAGCCT 1231
Query 1288 TTTGGTTGATCGGACAAAAGTGTCGGCTACTTGAAGAGCTTGACTTAACTGACAACGAGA 1347
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 TTTGGTTGATCGGACAGAAGTGTCGGCTACTTGAAGAGCTTGACTTAACTGACAACGAGA 1291
Query 1348 TTGATGATGAAGGACTGAAATCCATATCTAGTTGTCTGAGTCTTTCCTCGTTAAAGCTGG 1407
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1292 TTGATGATGAAGGACTGAAATCCATATCTAGTTGTCTTAGTCTTTCCTCGTTAAAGTTGG 1351
Query 1408 GAATTTGTCTTAACATAACAGACAAAGGGCTCTCGTACATCGGGATGGGCTGTTCAAATC 1467
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1352 GAATTTGTCTTAACATAACAGACAAAGGGCTCTCGTACATTGGGATGGGCTGCTCAAATC 1411
Query 1468 TCCGTGAACTTGATCTCTATAGGTCAGTGGGAATAACAGACGTAGGCATCTCCACAATTG 1527
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1412 TCCGTGAACTTGATCTCTATAGGTCAGTAGGAATAACAGACGTAGGCATCTCCACAATCG 1471
Query 1528 CCCAAGGCTGCATTCATCTGGAAACAATAAACATTTCATACTGCCAAGACATAACAGACA 1587
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1472 CCCAAGGCTGCATTCATCTGGAAACAATAAACATATCATACTGCCAAGACATAACAGACA 1531
Query 1588 AGTCCCTGGTTTCATTGTCCAAATGCTCGTTGTTACAAACATTCGAGAGCAGGGGATGTC 1647
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 AGTCCCTGGTTTCATTGTCAAAATGCTCGTTGTTACAAACATTCGAGAGCAGGGGATGTC 1591
Query 1648 CTAACATCACGTCCCAAGGACTTGCAGCCATTGCTGTTCGGTGCAAGCGACTCGCCAAGG 1707
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1592 CTAACATCACGTCACAAGGACTTGCGGCCATTGCTGTTCGGTGCAAGCGACTCGCCAAGG 1651
Query 1708 TTGACTTGAAGAAGTGCCCATCCATCAATGATGCGGGGTTGCTCGCTCTGGCTCACTTCT 1767
| |||||||||||||| ||||||||||||||| | |||||||||||||| || |||||||
Sbjct 1652 TCGACTTGAAGAAGTGTCCATCCATCAATGATTCTGGGTTGCTCGCTCTCGCCCACTTCT 1711
Query 1768 CTCAGAATCTCAAACAGATAAACGTGTCAGACACAGCTGTGACTGAAGTGGGACTTCTCT 1827
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1712 CACAGAATCTCAAACAGATAAACGTGTCAGACACAGCTGTGACTGAAGTGGGACTTCTCT 1771
Query 1828 CCCTAGCCAACATAGGGTGTTTACAGAACATAGCGGTTGTGAACTCGAGTGGTTTAAGAC 1887
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1772 CCCTAGCCAACATAGGGTGTTTACAGAACATAGCGGTTGTGATTTCAAGTGGTTTAAGCC 1831
Query 1888 CGAGCGGAGTAGCAGCAGCATTGCTGGGGTGTGGAGGATTAAGGAAAGCGAAACTACATG 1947
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1832 CAAGCGGAGTAGCAGCAGCATTGCTGGGGTGTGGAGGACTAAGGAAAGCGAAACTACATG 1891
Query 1948 CGTCCCTAAGATCACTGCTTCCTCTTTCTCTAATCCACCACTTGGAAGCTCGTGGTTGTG 2007
| ||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1892 CCTCCCTAAGATCGCTCCTTCCTCTATCTCTAATCCACCACTTGGAAGCTCGTGGTTGTG 1951
Query 2008 CGTTCCTCTGGAAAGACAATACCCTTCAGGCGGAGTTAGATCCCAAGTACTGGAAGCAAC 2067
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1952 CTTTCCTCTGGAAAGACAATACCCTTCAGGCGGAGTTAGATCCCAAGTACTGGAAGCAAC 2011
Query 2068 AGCTGGAAGAGATGGCGCCTTAAATTAAAAGTGAGAAGAAACATTCTGAAATGGGAAAGA 2127
||||||||||||| | ||||| || | ||| ||| | ||||||||| |||||||||
Sbjct 2012 AGCTGGAAGAGATAGTGCCTTGAA--A---GTGTGAA-A--CATTCTGAA-TGGGAAAGA 2062
Query 2128 GGAGTTCCTATGGGAGCCAGCAGACAGGCCCTGTTTTGGG--CCCAGTGTGGATTAGCTG 2185
|| ||| |||| |||| ||| ||||||||| |||||||| ||||||||||||||||||
Sbjct 2063 GG-GTTTCTATCGGAGGCAGAAGACAGGCCA-GTTTTGGGGGCCCAGTGTGGATTAGCTG 2120
Query 2186 GAACAATTTTGGTCTCTTTTGTGTTGTTGTTGACGGCGCGTGTTCTAAC-AACCCCACAC 2244
||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 2121 GAACATTTTTGGTCTCTTTTGTGTTATTGTTGACGGCGCGTGTACTAACCAACCCCACAC 2180
Query 2245 AACCTTACATTATAAGTCTAGTCACATGGTGG-G-T--GACATGGTACCGTTGTATATGT 2300
||||||| |||||||||||||||||||||||| | | || |||||||||||||||||||
Sbjct 2181 AACCTTATATTATAAGTCTAGTCACATGGTGGTGATATGA-ATGGTACCGTTGTATATGT 2239
Query 2301 AGtttttgtttcttttttttttttttttGGTTGGGGAGCCGAAATTAACGGACGTAACAG 2360
| | |||||||||||| ||||||| ||||| |||||||||||||||||
Sbjct 2240 AAT--------CTTTTTTTTTTT-----GGTTGGGT-GCCGATATTAACGGACGTAACAG 2285
Query 2361 AGTCACAAGGG 2371
|||||||||||
Sbjct 2286 AGTCACAAGGG 2296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93663912455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5