BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G01720.1 Length=2485 Score E Sequences producing significant alignments: (Bits) Value Ahg486896 jgi|Araly1|486896|fgenesh2_kg.6__30__AT5G01720.1 3349 0.0 > Ahg486896 jgi|Araly1|486896|fgenesh2_kg.6__30__AT5G01720.1 Length=2296 Score = 3349 bits (1813), Expect = 0.0 Identities = 2138/2291 (93%), Gaps = 37/2291 (2%) Strand=Plus/Plus Query 90 CAGATGAAGAAGGTTAAACAGATTCGTGTCTTAAAGCCTTTCGATCTTCTCTCGGAAGAG 149 ||||||||||||||||| |||||||| |||| ||||||||||||||||||||| |||||| Sbjct 34 CAGATGAAGAAGGTTAAGCAGATTCGCGTCTCAAAGCCTTTCGATCTTCTCTCCGAAGAG 93 Query 150 CTCGTCTTTATCATCCTTGACCTCATCTCTCCCAACCCTTCCGATCTCAAATCCTTCTCT 209 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 94 CTCGTCTTCATCATCCTTGACCTCATCTCTCCCAACCCTTCCGATCTCAAATCCTTCTCT 153 Query 210 CTTACTTGCAAAT-CTTTCTACCAGCTCGAGTCCAAGCACCGCGGATCCTTAAAACCTCT 268 ||||||||||||| ||| ||||| |||||||||||||||||| |||||||||||||||| Sbjct 154 CTTACTTGCAAATGGTTT-TACCAACTCGAGTCCAAGCACCGCCGATCCTTAAAACCTCT 212 Query 269 CCGCTCCGACTATCTCCCTCGCATCTTGACTCGTTACCGGAACACCACCGATCTCGATCT 328 |||||||||||| ||||||||||||||||| |||| ||| |||||||||||||||||||| Sbjct 213 CCGCTCCGACTACCTCCCTCGCATCTTGACCCGTTTCCGCAACACCACCGATCTCGATCT 272 Query 329 TACCTTCTGCCCGCGTGTCACTGACTACGCGCTTAGCGTCGTTGGCTGTCTCTCCGGACC 388 |||||||||||| || |||||||||||||| || ||||||||||||||||||| ||| || Sbjct 273 TACCTTCTGCCCTCGCGTCACTGACTACGCCCTCAGCGTCGTTGGCTGTCTCTGCGGTCC 332 Query 389 TACGCTTCGCTCCCTCGACCTCTCGCGCTCTGGCTCCTTCTCCGCCGCGGGACTACTGCG 448 |||||| | |||||||||||| || ||||||| |||||||||||||||||| || ||| | Sbjct 333 TACGCTCCACTCCCTCGACCTTTCTCGCTCTGCCTCCTTCTCCGCCGCGGGGCTCCTGAG 392 Query 449 ATTGGCCCTCAAATGTGTCAATTTAGTCGAGATTGACCTGTCCAATGCGACGGAGATGAG 508 | ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 393 ACTGGCCGTCAAATGTGTCAATTTAGTCGAGATTGACCTGTCGAATGCGACGGAGATGAG 452 Query 509 AGACGCCGATGCTGCGGTGGTGGCGGAGGCGAGGAGTCTGGAGAGGCTGAAGCTGGGCAG 568 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 453 AGACGCCGATGCGGCGGTGGTGGCGGAGGCGAGGAGTCTGGAGAGGCTGAAGCTGGGGAG 512 Query 569 ATGCAAGATGCTGACGGACATGGGAATCGGATGTATAGCAGTTGGATGTAAGAAGCTCAA 628 |||||||||||| |||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct 513 ATGCAAGATGCTCACGGACATGGGAATCGGATGCATCGCAGTTGGATGCAAGAAGCTCAA 572 Query 629 TACGGTTAGCTTGAAATGGTGTGTTGGCGTCGGAGATTTAGGGGTTGGCTTGCTTGCCGT 688 | ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 573 CATGGTTAGCTTGAAATGGTGTGTTGGCGTCGGAGATTTAGGCGTCGGCTTGCTTGCCGT 632 Query 689 CAAATGCAAGGACATTCGCACCTTAGACCTCTCCTACTTGCCGATCACAGGAAAGTGTTT 748 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 633 CAAATGCAAGGACATTCGCACCTTAGACCTCTCCTACTTGCCGATTACAGGCAAGTGTTT 692 Query 749 ACATGACATTCTGAAACTTCAACACCTTGAAGAACTTCTTCTAGAAGGGTGCTTTGGAGT 808 |||||||||| ||||||| |||||||||||||||||| |||||||||||||||| ||||| Sbjct 693 ACATGACATTTTGAAACTCCAACACCTTGAAGAACTTTTTCTAGAAGGGTGCTTCGGAGT 752 Query 809 AGATGATGACAGTCTTAAATCACTCAGACATGATTGCAAGTCATTGAAGAAGCTTGATGC 868 ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| Sbjct 753 AGATGATGACAGTCTTAAATCTCTCAGACATGATTGCAAGACATTGAAGAAGCTCGATGC 812 Query 869 ATCCAGCTGCCAGAATTTAACTCATAGAGGTTTAACCTCACTTTTAAGCGGGGCAGG-AT 927 |||||||||||||||||||||||||| |||||||||||||||||||||||| || || || Sbjct 813 ATCCAGCTGCCAGAATTTAACTCATAAAGGTTTAACCTCACTTTTAAGCGGAGC-GGCAT 871 Query 928 ATCTTCAGCGACTTGATCTATCACACTGTTCTTCTGTGATATCATTGGATTTTGCGAGTA 987 ||| |||||||| |||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 872 GTCTCCAGCGACTGGATCTAGCACATTGTTCTTCTGTGATATCATTGGATTTTGCGAGTA 931 Query 988 GCTTAAAGAAGGTTTCAGCATTACAGTCGATCAGGTTGGATGGTTGTTCTGTTACGCCTG 1047 ||||||||||||||||||| |||||||| ||| |||||||||||||||||||||| |||| Sbjct 932 GCTTAAAGAAGGTTTCAGCGTTACAGTCAATCGGGTTGGATGGTTGTTCTGTTACACCTG 991 Query 1048 ATGGTTTGAAGGCGATAGGCACATTGTGCAATTCCCTGAAAGAGGTTAGCCTAAGCAAAT 1107 | ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| | Sbjct 992 ACGGTTTAAAGGCGATAGGCACATTGTGCAATTCCCTGAATGAGGTTAGTCTAAGCAAGT 1051 Query 1108 GCGTGAGCGTAACTGATGAAGGTCTTTCTTCTCTAGTAATGAAACTGAAAGACCTCAGAA 1167 | ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1052 GTGTGAGCGTATCTGATGAAGGTCTCTCTTCTCTAGTAATGAAACTGAAAGACCTCAGAA 1111 Query 1168 AACTTGACATCACATGTTGCCGGAAACTAAGTAGAGTTTCAATCACCCAAATCGCCAATT 1227 ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 1112 AACTTGACATCACATGTTGTCGGAAACTAAGTGGAGTTTCAATCACCCAAATCGCCAATT 1171 Query 1228 CGTGTCCTTTACTAGTCTCTTTGAAGATGGAGTCTTGTTCTCTTGTTTCCAGAGAAGCCT 1287 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1172 CATGTCCCTTACTAGTCTCTTTGAAGATGGAGTCTTGTTCTCTTGTTTCCAGAGAAGCCT 1231 Query 1288 TTTGGTTGATCGGACAAAAGTGTCGGCTACTTGAAGAGCTTGACTTAACTGACAACGAGA 1347 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1232 TTTGGTTGATCGGACAGAAGTGTCGGCTACTTGAAGAGCTTGACTTAACTGACAACGAGA 1291 Query 1348 TTGATGATGAAGGACTGAAATCCATATCTAGTTGTCTGAGTCTTTCCTCGTTAAAGCTGG 1407 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 1292 TTGATGATGAAGGACTGAAATCCATATCTAGTTGTCTTAGTCTTTCCTCGTTAAAGTTGG 1351 Query 1408 GAATTTGTCTTAACATAACAGACAAAGGGCTCTCGTACATCGGGATGGGCTGTTCAAATC 1467 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 1352 GAATTTGTCTTAACATAACAGACAAAGGGCTCTCGTACATTGGGATGGGCTGCTCAAATC 1411 Query 1468 TCCGTGAACTTGATCTCTATAGGTCAGTGGGAATAACAGACGTAGGCATCTCCACAATTG 1527 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 1412 TCCGTGAACTTGATCTCTATAGGTCAGTAGGAATAACAGACGTAGGCATCTCCACAATCG 1471 Query 1528 CCCAAGGCTGCATTCATCTGGAAACAATAAACATTTCATACTGCCAAGACATAACAGACA 1587 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1472 CCCAAGGCTGCATTCATCTGGAAACAATAAACATATCATACTGCCAAGACATAACAGACA 1531 Query 1588 AGTCCCTGGTTTCATTGTCCAAATGCTCGTTGTTACAAACATTCGAGAGCAGGGGATGTC 1647 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1532 AGTCCCTGGTTTCATTGTCAAAATGCTCGTTGTTACAAACATTCGAGAGCAGGGGATGTC 1591 Query 1648 CTAACATCACGTCCCAAGGACTTGCAGCCATTGCTGTTCGGTGCAAGCGACTCGCCAAGG 1707 ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1592 CTAACATCACGTCACAAGGACTTGCGGCCATTGCTGTTCGGTGCAAGCGACTCGCCAAGG 1651 Query 1708 TTGACTTGAAGAAGTGCCCATCCATCAATGATGCGGGGTTGCTCGCTCTGGCTCACTTCT 1767 | |||||||||||||| ||||||||||||||| | |||||||||||||| || ||||||| Sbjct 1652 TCGACTTGAAGAAGTGTCCATCCATCAATGATTCTGGGTTGCTCGCTCTCGCCCACTTCT 1711 Query 1768 CTCAGAATCTCAAACAGATAAACGTGTCAGACACAGCTGTGACTGAAGTGGGACTTCTCT 1827 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1712 CACAGAATCTCAAACAGATAAACGTGTCAGACACAGCTGTGACTGAAGTGGGACTTCTCT 1771 Query 1828 CCCTAGCCAACATAGGGTGTTTACAGAACATAGCGGTTGTGAACTCGAGTGGTTTAAGAC 1887 |||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | Sbjct 1772 CCCTAGCCAACATAGGGTGTTTACAGAACATAGCGGTTGTGATTTCAAGTGGTTTAAGCC 1831 Query 1888 CGAGCGGAGTAGCAGCAGCATTGCTGGGGTGTGGAGGATTAAGGAAAGCGAAACTACATG 1947 | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1832 CAAGCGGAGTAGCAGCAGCATTGCTGGGGTGTGGAGGACTAAGGAAAGCGAAACTACATG 1891 Query 1948 CGTCCCTAAGATCACTGCTTCCTCTTTCTCTAATCCACCACTTGGAAGCTCGTGGTTGTG 2007 | ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||| Sbjct 1892 CCTCCCTAAGATCGCTCCTTCCTCTATCTCTAATCCACCACTTGGAAGCTCGTGGTTGTG 1951 Query 2008 CGTTCCTCTGGAAAGACAATACCCTTCAGGCGGAGTTAGATCCCAAGTACTGGAAGCAAC 2067 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1952 CTTTCCTCTGGAAAGACAATACCCTTCAGGCGGAGTTAGATCCCAAGTACTGGAAGCAAC 2011 Query 2068 AGCTGGAAGAGATGGCGCCTTAAATTAAAAGTGAGAAGAAACATTCTGAAATGGGAAAGA 2127 ||||||||||||| | ||||| || | ||| ||| | ||||||||| ||||||||| Sbjct 2012 AGCTGGAAGAGATAGTGCCTTGAA--A---GTGTGAA-A--CATTCTGAA-TGGGAAAGA 2062 Query 2128 GGAGTTCCTATGGGAGCCAGCAGACAGGCCCTGTTTTGGG--CCCAGTGTGGATTAGCTG 2185 || ||| |||| |||| ||| ||||||||| |||||||| |||||||||||||||||| Sbjct 2063 GG-GTTTCTATCGGAGGCAGAAGACAGGCCA-GTTTTGGGGGCCCAGTGTGGATTAGCTG 2120 Query 2186 GAACAATTTTGGTCTCTTTTGTGTTGTTGTTGACGGCGCGTGTTCTAAC-AACCCCACAC 2244 ||||| ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| Sbjct 2121 GAACATTTTTGGTCTCTTTTGTGTTATTGTTGACGGCGCGTGTACTAACCAACCCCACAC 2180 Query 2245 AACCTTACATTATAAGTCTAGTCACATGGTGG-G-T--GACATGGTACCGTTGTATATGT 2300 ||||||| |||||||||||||||||||||||| | | || ||||||||||||||||||| Sbjct 2181 AACCTTATATTATAAGTCTAGTCACATGGTGGTGATATGA-ATGGTACCGTTGTATATGT 2239 Query 2301 AGtttttgtttcttttttttttttttttGGTTGGGGAGCCGAAATTAACGGACGTAACAG 2360 | | |||||||||||| ||||||| ||||| ||||||||||||||||| Sbjct 2240 AAT--------CTTTTTTTTTTT-----GGTTGGGT-GCCGATATTAACGGACGTAACAG 2285 Query 2361 AGTCACAAGGG 2371 ||||||||||| Sbjct 2286 AGTCACAAGGG 2296 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93663912455 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5