BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01740.1
Length=724
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486893 jgi|Araly1|486893|fgenesh2_kg.6__27__AT5G01740.1 966 0.0
> Ahg486893 jgi|Araly1|486893|fgenesh2_kg.6__27__AT5G01740.1
Length=647
Score = 966 bits (523), Expect = 0.0
Identities = 598/633 (94%), Gaps = 10/633 (2%)
Strand=Plus/Plus
Query 1 ACACAACACAAATATAAGACTTTTCACTTGAAAACCTATCCTGTTCTAAGTCTG-AAGAG 59
|||| ||||||| ||||||| |||||||| |||||||||||||||||||||||| || |
Sbjct 1 ACACTACACAAAAATAAGACCTTTCACTTCAAAACCTATCCTGTTCTAAGTCTGAAATA- 59
Query 60 AGAAATATACAAATGGAAGCACACAACGTAGAGATATCAACAAGACTTACCCCAGAAATG 119
| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 60 ATAAATTTACAAATGGAAGCACACAACGTAGAGATATCGACAAGACTTACCCCAGAAATG 119
Query 120 AAAAACCAGGGAACCATAGAGTTACTCTACAAAGCGTTGCAGCAAGGCGACACTTCTACG 179
||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 120 AAAAACCAGAGAACCATAGAGTTACTCTACAAAGCGTTGCAGCAAGGAGACACCTCGACG 179
Query 180 GTGACCAAAGTGGTGGCCAGTGACGTGGAATGGTGGTTCCATGGACCGCACGATTGTCAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 GTGACCAAAGTGGTGGCCAGTGACGTGGAATGGTGGTTCCATGGACCGCACCATTGTCAA 239
Query 240 CACATGATGAGGCTGCTAACAGGGGAACCTCCGAGGCAGGTTTCGTTCAGGTTTGAGCCA 299
|||||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 240 CACATGATGAGGCTACTAACAGGGGAACCACGGAGCCAGGTTTCGTTCAGGTTTGAGCCA 299
Query 300 AGCAGTGTACAAGTAGTGGTGCCTGGTCATGACTGCGTGATTGCAGAAGGGTGGGAGGGT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGCAGTGTACAAGTAGTGGTGCCTGGTCATGACTGCGTGATTGCAGAAGGGTGGGAGGGT 359
Query 360 TCACGCGTGTACTGGGTTCACGTGTGGAAATTGAAAGACGGAGTGGTCACTGAGCTAAGA 419
|||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 360 TCACACGTGTACTGGGTTCACGTGTGGAAGTTGAAAGACGGAGTGGTCACGGAGCTAAGA 419
Query 420 GAGTATTTCAACACATGGCTCACTGTTACAGACTACAGTCTTGGAGCAGTAGGATGGGAC 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 GAGTATTTCAACACATGGCTCACTGTTACAGACTACAGTCTTGGAGCAATAGGATGGGAC 479
Query 480 ATGGGGCGTTGTACGGTTTGGGAGAGCGTACCAAGGGACCTGGCTCGTGGTTCGTTGCCT 539
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 480 ATGGGGCGTTGTACGGTTTGGGAGAGCGTACCAAGGGACCTGGCTCGTGGATCGTTGCCT 539
Query 540 AGCTTGTTGTTAGCTATTTAACTA-ATGACTAAAGAGTAAATTAATTAAGTAACACACAG 598
|||||| |||||||||||||| || |||||||||||||||||||| |||||||| |
Sbjct 540 AGCTTGCTGTTAGCTATTTAAGTATATGACTAAAGAGTAAATTAA----GTAACACA--G 593
Query 599 TTTGTCTCTGG-GGGTTTCTATACTTTTATGAT 630
||||| ||||| |||||||||||||||||||||
Sbjct 594 TTTGTGTCTGGTGGGTTTCTATACTTTTATGAT 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26647918983
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5