BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01760.1
Length=1847
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494915 jgi|Araly1|494915|fgenesh2_kg.8__731__AT5G01760.1 2158 0.0
Ahg486890 jgi|Araly1|486890|fgenesh2_kg.6__24__AT5G01760.1 2128 0.0
> Ahg494915 jgi|Araly1|494915|fgenesh2_kg.8__731__AT5G01760.1
Length=1786
Score = 2158 bits (1168), Expect = 0.0
Identities = 1523/1686 (90%), Gaps = 57/1686 (3%)
Strand=Plus/Plus
Query 1 CTTGTGGAATAAAGGCA-TTTTCGACGAGAATTTC--T-G---T-AGAGATGAGGCCTTC 52
||||||||||||||| | |||| |||||||||||| | | | ||| |||||||| ||
Sbjct 1 CTTGTGGAATAAAGGTATTTTTAGACGAGAATTTCAGTGGAATTCAGAAATGAGGCCATC 60
Query 53 TTGTGCTTCTTCCTCCTCCTCCTCTGCTTCTCCTTCGTTGAGGCTATCGTCAGTGACAGT 112
| | ||||||| ||||| |||||||||||||||||||| | ||| || |||||||||||
Sbjct 61 -T-T-CTTCTTCTTCCTCATCCTCTGCTTCTCCTTCGTTTACGCTGTCTTCAGTGACAGT 117
Query 113 GGCGGTGGACAAAGCCACGAGCGAGCTTCTCCGCACTCCTGATTGGACCATCATCATCGC 172
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GGCGGTGGACAAAGCCACAAGCGAGCTTCTCCGCACTCCTGATTGGACCATCATCATCGC 177
Query 173 CATCTGCGATTCTCTCAATTCTAATCGCTGGCAATGCAAAGATGCCATCAAAGCCGTGAA 232
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 178 CATCTGCGATTCCCTCAATTCTAATCGCTGGCAATGCAAAGATGCTATCAAAGCCGTGAA 237
Query 233 GAGAAGATTGCAGCACAAGAGTTCTAGAGTTCAATTACTCACTTTAACGTTGTTGGAGGC 292
|||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 238 GAGAAGATTGCAACACAAGAGTTCTAAAGTGCAATTACTCACTTTAACGTTGTTGGAGGC 297
Query 293 AATGCTGAAGAACTGCGGTGACTTTGTGCATTCTCATATCGCTGAGAAACATCTTCTTGA 352
||||||||| || || ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 298 AATGCTGAAAAATTGTGGTGACTTTGTTCATTCTCATATCACTGAGAAACATCTTCTTGA 357
Query 353 AGATATGGTTAAGCTTGTCAGGAAAAAGGGTGATTTTGAAGTAAGGAACA-AACTCTTGA 411
|||| |||||||| |||||||||||||||||||||||||||||||||||| || |||||
Sbjct 358 AGATCTGGTTAAGATTGTCAGGAAAAAGGGTGATTTTGAAGTAAGGAACAGAA-TCTTGC 416
Query 412 TTTTGTTGGATACATGGAATGAAGCATTCAGTGGAGTTGCTTGCAAACACCCTCACTACA 471
| ||||||||||||||||||||||||||| |||||||| |||| ||| |||| |||||||
Sbjct 417 TATTGTTGGATACATGGAATGAAGCATTCGGTGGAGTTCCTTGTAAATACCCCCACTACA 476
Query 472 ACTGGGCATACCAAGAGCTTAAACGGTGTGGTGTGAAATTTCCACAACGTTCGAAAGAAG 531
| ||||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||||
Sbjct 477 ATTGGGCATACCAAGAGCTTAAACGGTGTGGGGTGACATTCCCACAACGTTCCAAAGAAG 536
Query 532 CACCCCTGATGCTTGAACCACCACCTCCAGTGACACAGTCTTCTTC--C-TC-T--TCTT 585
||||| ||||||||| ||||||||||||| ||||||| |||||||| | || | ||||
Sbjct 537 CACCCATGATGCTTGCACCACCACCTCCAATGACACATTCTTCTTCTTCTTCTTCATCTT 596
Query 586 CTATGAATTTAATGTCCATTGGCTCATTTAGAAGGCTTGACGAAACTATGGCTACAGAAA 645
||||||||||| |||||||||| |||||||||||||| |||||| |||||||||||||||
Sbjct 597 CTATGAATTTACTGTCCATTGGTTCATTTAGAAGGCTCGACGAAGCTATGGCTACAGAAA 656
Query 646 TTGAGAGCTTAAGCTTATCAAGCCTTGAATCCATGAGAAATGTGATGGATCTTGTGAATG 705
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TTGAGGGCCTAAGCTTATCAAGCCTTGAATCCATGAGAAATGTGATGGATCTTGTGAATG 716
Query 706 ACATGGTTCAAGCCGTTAATCCTTCTGATAAATCAGCCT-TAAAAGATGAGCTAATAGTT 764
|||||||||||||||| ||||| |||||||||||||| | |||| |||||||||||||||
Sbjct 717 ACATGGTTCAAGCCGTGAATCCATCTGATAAATCAGC-TATAAATGATGAGCTAATAGTT 775
Query 765 GATCTAGTAGAGCAGTGCAGATCTAATCAGAAGAAACTAATCCAGATGCTCACTACAACT 824
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 776 GATCTAGTAGAGCAGTCCAGATCTAATCAAAAGAAACTAATCCAGATGCTCACTACAACT 835
Query 825 GCGGACGAGGATGTTCTGGCACGTGGTCTCGAGCTGAATGACTCTTTGCAGGTAGTGCTC 884
|| || ||||||||| |||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 836 GCTGATGAGGATGTTATGGCACGTGGGCTCGAGCTGAATGACTCTTTACAGGTAGTGCTC 895
Query 885 GCTAGACACGACGCTATTGCCTCTGGCGTCTCTCTTCCTTTGTTGTTGCAGGCCCCAGAG 944
|| ||||| ||||||||||| ||||| || ||||||||| ||||| | |||||||||||
Sbjct 896 GCGAGACATGACGCTATTGCATCTGGTGTATCTCTTCCTATGTTG--G-AGGCCCCAGAG 952
Query 945 CCAAGAGAGACAAGCTCTTCCCTCAAGACTTGTGGTGCTGCTGCTCTTGAGTCTGCTGAC 1004
| |||||||| |||||||||||| || ||| |||||||||||||||| ||
Sbjct 953 --A-------CAAGCTCTGCCCTCAAGACTTATGATGCAGCTGCTCTTGAGTCTG---AC 1000
Query 1005 TCTGAGTCTTCTTCATCATCATCGAGCAGTGAAAGTGAAACAGATGAAGTGGAGGATGTT 1064
||||||||||||||||| || |||||||||||||||||||||||||| ||||||| ||
Sbjct 1001 TCTGAGTCTTCTTCATCGTC---GAGCAGTGAAAGTGAAACAGATGAAGGGGAGGATATT 1057
Query 1065 AAAGATGACTTTATACAGCTAGCCAAAAGGCATGCTCTATTAAATGCCCTACACAGCGAT 1124
|||||||||||||| ||| |||||| |||||| |||||||||| |||| ||||||||||
Sbjct 1058 AAAGATGACTTTATGCAGTTAGCCAGAAGGCACGCTCTATTAAGTGCCGAACACAGCGAT 1117
Query 1125 GAAGAAGAAGAAACATTGCTTCTAGGCAACGACAATGAAAAAACAGCAGAAGCAGAAGCC 1184
|||||||||||||||||||||||| |||| ||||||||||||| ||| ||| ||||||||
Sbjct 1118 GAAGAAGAAGAAACATTGCTTCTACGCAATGACAATGAAAAAATAGCGGAAACAGAAGCC 1177
Query 1185 AAGACACAGTGCAAAGATCTAGCTTTGTTCGacacaacaacaacaacaacCACCAAGTCA 1244
||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1178 AAGACACAGTGCAAAAATCTAGCTTTGTTCGACACAACAACAACAACCACCACCGAGTCA 1237
Query 1245 GAGCAGGATATTATTGAACTTCTCAGCCTAACTCTGTCAACAACTGCTCTGCCCTCCCCA 1304
|||||||| ||||| |||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 1238 GAGCAGGACATTATAGAACTTCTCAGCCTAACTCTGTCAACGACTGCTCTACCGTCCCCA 1297
Query 1305 CAAACGCAACCGCA---G-A-CG-CA---GCA-CC-C-ATCGTTTTTTGCTGATGATAAT 1352
||||||||||| || | | | || ||| || | ||||||||||||||||||||||
Sbjct 1298 CAAACGCAACCTCAAATGCAACCACAAACGCAGCCTCCATCGTTTTTTGCTGATGATAAT 1357
Query 1353 ATTCTTATGAACAGCTACGTTGTCCCCTGGGCACAGTCCCAAGAAGAACCACAAGTCCCA 1412
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1358 ATTCTTATGAACAACTACGTTGTCCCCTGGGCACAGTCCCAAGAAGAACCGCAAGTCCCA 1417
Query 1413 AAAATGACTCAGTTTGCTCCATC-AGGACCTCAGTTTCAGCCATGGCCTCTGCAGCAGCA 1471
||||||||||||||||| ||||| || |||||||||||||||||||||||| ||||||||
Sbjct 1418 AAAATGACTCAGTTTGCACCATCGAG-ACCTCAGTTTCAGCCATGGCCTCTACAGCAGCA 1476
Query 1472 ACAACCGTATTCATACGGTTATCCTCAGCCACAATGGAGCGGTGGCCAAGTAAACAGTAA 1531
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1477 ACAACCGTTTTCATACGGTTATCCTCAGCCACAATGGAGCGGTGGCCAAGTAAATAGTAA 1536
Query 1532 TGACACAACATTCTGGAGCCAAGGAGGCAATGAGAATATGGTCTTTGAGAGAAACTTGCA 1591
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1537 TGACACAACATTGTGGAGCCAAGGAGGCAATGAGAATAAGGTCTTTGAGAGAAACTTGCA 1596
Query 1592 AGT-CTCAAACTCATTTCCTGCTAGAGCCACGGGCACATCCGGTGCTGC-TACTGCGGCT 1649
| | || |||||| || || |||||||||||||| |||||||||||||| | ||| | ||
Sbjct 1597 A-TACTTAAACTCCTTCCCCGCTAGAGCCACGGGGACATCCGGTGCTGCCT-CTGTGCCT 1654
Query 1650 ACAGTG 1655
|| |||
Sbjct 1655 ACGGTG 1660
> Ahg486890 jgi|Araly1|486890|fgenesh2_kg.6__24__AT5G01760.1
Length=1762
Score = 2128 bits (1152), Expect = 0.0
Identities = 1499/1658 (90%), Gaps = 58/1658 (3%)
Strand=Plus/Plus
Query 2 TTGTGGAATAAAGGCA-TTTTCGACGAGAATTTCTGTAGAGATGAGGCCTTCTTGTGCTT 60
|||||||||||||||| |||| |||||||| || ||| | |||||||| || | | |||
Sbjct 1 TTGTGGAATAAAGGCATTTTTAGACGAGAA-TT-TGT-G-TATGAGGCCATC-T-T-CTT 53
Query 61 CTTCCTCCTCCTCCTCTGCTTCTCCTTCGTTGAGGCTATCGTCAGTGACAGTGGCGGTGG 120
|||| ||||| |||||||||||||||||||| | ||| || |||||||||||| ||||||
Sbjct 54 CTTCTTCCTCATCCTCTGCTTCTCCTTCGTTTACGCTGTCTTCAGTGACAGTGACGGTGG 113
Query 121 ACAAAGCCACGAGCGAGCTTCTCCGCACTCCTGATTGGACCATCATCATCGCCATCTGCG 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 ACAAAGCCACAAGCGAGCTTCTCCGCACTCCTGATTGGACCATCATCATCGCCATCTGCG 173
Query 181 ATTCTCTCAATTCTAATCGCTGGCAATGCAAAGATGCCATCAAAGCCGTGAAGAGAAGAT 240
|||| |||||||||||| |||||||||||||| |||| ||||||||||||||||||||||
Sbjct 174 ATTCCCTCAATTCTAATTGCTGGCAATGCAAATATGCGATCAAAGCCGTGAAGAGAAGAT 233
Query 241 TGCAGCACAAGAGTTCTAGAGTTCAATTACTCACTTTAACGTTGTTGGAGGCAATGCTGA 300
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
Sbjct 234 TGCAGCACAAGAGTTCTAAAGTGCAATTACTCACTTTAACGTTGTTGGAGGCAATGCACA 293
Query 301 AGAACTGCGGTGACTTTGTGCATTCTCATATCGCTGAGAAACATCTTCTTGAAGATATGG 360
| || || |||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 294 AAAATTGTGGTGACTTTGTGCATTCTCATATCACTAAGAAACATCTTCTTGAAGATATGG 353
Query 361 TTAAGCTTGTCAGGAAAAAGGGTGATTTTGAAGTAAGGAACA-AACTCTTGATTTTGTTG 419
||||| |||||||||||||||||||||||||||||||||||| || ||||| | ||||||
Sbjct 354 TTAAGATTGTCAGGAAAAAGGGTGATTTTGAAGTAAGGAACAGAA-TCTTGCTATTGTTG 412
Query 420 GATACATGGAATGAAGCATTCAGTGGAGTTGCTTGCAAACACCCTCACTACAACTGGGCA 479
||||| |||||||||||||||||||||||| |||| ||| ||||||||||||| |||||
Sbjct 413 GATACTTGGAATGAAGCATTCAGTGGAGTTCCTTGTAAATACCCTCACTACAATTGGGCG 472
Query 480 TACCAAGAGCTTAAACGGTGTGGTGTGAAATTTCCACAACGTTCGAAAGAAGCACCCCTG 539
||||||||||||||| ||||||| |||| ||| ||||| ||||| |||||||||||||||
Sbjct 473 TACCAAGAGCTTAAAGGGTGTGGGGTGACATTCCCACAGCGTTCCAAAGAAGCACCCCTG 532
Query 540 ATGCTTGAACCACCACCTCCAGTGACACAGTCTTCTTCCTCTTCTTCTATGAATTTAATG 599
||||||| ||||||||||||||||||||| |||||| || ||||||||||||||||||
Sbjct 533 ATGCTTGCACCACCACCTCCAGTGACACA---TTCTTCTTCATCTTCTATGAATTTAATG 589
Query 600 TCCATTGGCTCATTTAGAAGGCTTGACGAAACTATGGCTACAGAAATTGAGAGCTTAAGC 659
||||| || |||||||||||||| ||||||||||||||||||||||||||| || |||||
Sbjct 590 TCCATCGGTTCATTTAGAAGGCTCGACGAAACTATGGCTACAGAAATTGAGGGCCTAAGC 649
Query 660 TTATCAAGCCTTGAATCCATGAGAAATGTGATGGATCTTGTGAATGACATGGTTCAAGCC 719
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 650 TTATCAAGCCTTGAATCCATGAGAAATGTGATTGATCTTGTGAACGACATGGTTCAAGCA 709
Query 720 GTTAATCCTTCTGATAAATCAGCCT-TAAAAGATGAGCTAATAGTTGATCTAGTAGAGCA 778
|| ||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 710 GTGAATCCATCTGATAAATCAG-CTGTAAAAGATGAGCTAATAGTTGATCTAGTAGAGCA 768
Query 779 GTGCAGATCTAATCAGAAGAAACTAATCCAGATGCTCACTACAACTGCGGACGAGGATGT 838
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 769 GTGCAGATCTAATCAGAAGAAACTAATCCAGATGCTCACTACAACTGCTCATGAGGATGT 828
Query 839 TCTGGCACGTGGTCTCGAGCTGAATGACTCTTTGCAGGTAGTGCTCGCTAGACACGACGC 898
| || ||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 829 TATGACACGTGGGCTCGAGCTGAATGACTCTTTGCAGGTAGTGCTCGCGAGACATGACGC 888
Query 899 TATTGCCTCTGGCGTCTCTCTTCCTTTGTTGTTGCAGGCCCCAGAGCCAAGAGAGACAAG 958
|||||| ||||| |||||||||||| ||||| | ||||||||||| | ||||
Sbjct 889 TATTGCATCTGGTGTCTCTCTTCCTATGTTG--G-AGGCCCCAGAG--A-------CAAG 936
Query 959 CTCTTCCCTCAAGACTTGTGGTGCTGCTGCTCTTGAGTCTGCTGACTCTGAGTCTTCTTC 1018
|||| |||||||||||| || || || |||||||||||||| ||||||||||||||||
Sbjct 937 CTCTGCCCTCAAGACTTATGATGTTGTTGCTCTTGAGTCTG---ACTCTGAGTCTTCTTC 993
Query 1019 ATCATCATCGAGCAGTGAAAGTGAAACAGATGAAGTGGAGGATGTTAAAGATGACTTTAT 1078
|| || |||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 994 GTCGTC---GAGCAGTGAAAGTGAAACAGATGAAGGGGAGGATATTAAAGATGACTTTAT 1050
Query 1079 ACAGCTAGCCAAAAGGCATGCTCTATTAAATGCCCTACACAGCGATGAAGAAGAAGAAAC 1138
||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||
Sbjct 1051 GCAGCTAGCCAAAAGGCACACTCTATTAAGTGCCGAACACAGCGATGAAGAAGAAGAAAC 1110
Query 1139 ATTGCTTCTAGGCAAC-GACAATGAAAAAACAGC-AGAAGCAGAAGCCAAGACACAGTGC 1196
|||||||||||||| | ||||||||||||| ||| | || |||||||||||||| |||||
Sbjct 1111 ATTGCTTCTAGGCA-CTGACAATGAAAAAATAGCGAAAA-CAGAAGCCAAGACAAAGTGC 1168
Query 1197 AAAGATCTAGCTTTGTTCGacacaacaacaacaacaacCACCAAGTCAGAGCAGGATATT 1256
||| ||||||||||||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct 1169 AAAAATCTAGCTTTGTTCGACACAACAACAACAAC--C-ACCAAGTCAGAGCAGGACATT 1225
Query 1257 ATTGAACTTCTCAGCCTAACTCTGTCAACAACTGCTCTGCCCTCCCCACAAACGCAACCG 1316
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1226 ATTGAACTTCTCAGCCTAACTCTGTCAACAACTGCTCTACCCTCCCCACAAACGCAACCT 1285
Query 1317 CA---G-A-CG-CA---GCA-CC-C-ATCGTTTTTTGCTGATGATAATATTCTTATGAAC 1364
|| | | | || ||| || | ||| ||||||| ||||||||||||||||||||||
Sbjct 1286 CAAATGCAACCACAAACGCAACCTCCATCTTTTTTTGTTGATGATAATATTCTTATGAAC 1345
Query 1365 AGCTACGTTGTCCCCTGGGCACAGTCCCAAGAAGAACCACAAGTCCCAAAAATGACTCAG 1424
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1346 AGCTACGTTGTCCCCTGGGCACAGTCCCAAGAAGAACCGCAAGTCCCAAAAATGACTCAG 1405
Query 1425 TTTGCTCCATCAGGACCTCAGTTTCAGCCATGGCCTCTGCAGCAGCAACAACCGTATT-C 1483
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1406 TTTGCTCCATCGGGACCTCAGTTTCAGCCATGGCCTCTGCAGCAGCAACAACCGT-TTAC 1464
Query 1484 ATACGGTTATCCTCAGCCACAATGGAGCGGTGGCCAAGTAAACAGTAATGACACAACATT 1543
||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 1465 ATACGGTTATCCTCAGCCACAATGGAGCGGTGGTCAAGTAAATAGTAATGAAACAACATT 1524
Query 1544 CTGGAGCCAAGGAGGCAATGAGAATATGGTCTTTGAGAGAAACTTGCAAGT-CTCAAACT 1602
|||||||||||| |||||||||||| ||| |||||||||||||||||| | ||||||||
Sbjct 1525 GTGGAGCCAAGGATGCAATGAGAATAAGGTTTTTGAGAGAAACTTGCAA-TACTCAAACT 1583
Query 1603 CATTTCCTGCTAGAGCCACG-GGCACATCCGGTGCTGC 1639
| || || ||||||||||| || ||||||||||||||
Sbjct 1584 CCTTCCCCGCTAGAGCCACAAGG-ACATCCGGTGCTGC 1620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69362336145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5