BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01780.2
Length=1486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939482 jgi|Araly1|939482|scaffold_600026.1 1136 0.0
> Ahg939482 jgi|Araly1|939482|scaffold_600026.1
Length=1215
Score = 1136 bits (615), Expect = 0.0
Identities = 950/1100 (86%), Gaps = 70/1100 (6%)
Strand=Plus/Plus
Query 155 TTCTTCTCCTCACTCTCCGATCCCAAAGACG-CATACTGCATCGCTTGACTCACTTAATG 213
||||||| ||||||||||||| | ||||||| || ||| ||||| |||| ||||| |||
Sbjct 40 TTCTTCTACTCACTCTCCGATTCGAAAGACGCCA-ACTACATCGTTTGAATCACTCAATA 98
Query 214 ATTATGAAGAGCAATTTCCACCACTTACTGGTGGCTCT---AAGACGAA-G--------- 260
||||||| ||||||||||||||||||||||| |||||| |||| ||| |
Sbjct 99 ATTATGACGAGCAATTTCCACCACTTACTGGCGGCTCTCAGAAGAAGAAGGTTTCACCAA 158
Query 261 -AAGT----TTTATCTTGGTTCTACCAATCCTTCTACTCCATGTCAAAGTTCACAGCTTC 315
|||| || |||||||||||||||||||||||| | ||||| ||||||||||| |||
Sbjct 159 CAAGTGAGGTTGATCTTGGTTCTACCAATCCTTCTAGTTCATGTAAAAGTTCACAGTTTC 218
Query 316 AAAACTGGACAAGCGGTAAGGATGCTTTGTCTTTGCAGAGGAATTTGGGATGTAAGAATA 375
|||| ||| | | |||| | | | | | ||| | ||||| ||| ||
Sbjct 219 AAAATTGG---A-C---AAGG--G----G----T--A-A-GAA-TAGGGAT-CAAG-GTA 254
Query 376 GGAGGAGGAGACGGGCTTCACGGTTTTTACATGAAGAA-TCCAATGGGACAACTTTTGAG 434
|||||||||||||||||||| |||| || |||||||| | |||||||||||||||||
Sbjct 255 CGAGGAGGAGACGGGCTTCACTGTTTATAGATGAAGAAGT-GAATGGGACAACTTTTGAT 313
Query 435 GTTGGCGCTGGTA-T--TGGCTCTCCAACAAGTATGGTTCATTTTGATTCTACCAACCCT 491
||||||||||||| | |||||| | ||||||| | ||| | |||||||||||||||||
Sbjct 314 GTTGGCGCTGGTACTGCTGGCTCACGAACAAGTGTTGTTGAGCTTGATTCTACCAACCCT 373
Query 492 TCTTCTTCTAGTAAAAGTTCACAATCTCAAAATTTGAAAATCCGCAAGGTTAGGAATCAC 551
|||||| | ||||| |||||||||||||| ||||||||||||| |||||||| |
Sbjct 374 TCTTCTCCGAGTAAGAGTTCACAATCTCATAATTTGAAAATCCACAAGGTTA-G------ 426
Query 552 AGGAATTCTGGATTCAAGAGTAGGGATCAAAGTCCTCAGAGGATAAAGGATCCTCCGCCT 611
| ||||||||||||||||||||||||||||||||| |||||| | ||||| | || |||
Sbjct 427 A--AATTCTGGATTCAAGAGTAGGGATCAAAGTCCTAAGAGGACACAGGAT-C-CC-CCT 481
Query 612 TTCGACATATGTTCTTCAGTCCTCGAAAGAAATGATACAAGTATAAAAGATTGGATTTTG 671
|||||||| ||||||||||||||| | || | |||| ||||| |||||| ||||
Sbjct 482 TTCGACATTTGTTCTTCAGTCCTC----G--AT--T-CAAGCATAAACGATTGGGCTTTG 532
Query 672 GCGGATGAAACAAACAGAGAAACTGTTGAAGTTAGTAATAAACACAAAGTTATAAGGCCT 731
||||||||||||||| | |||||||||||||||||||||||||||| |||| ||||||||
Sbjct 533 GCGGATGAAACAAACGGGGAAACTGTTGAAGTTAGTAATAAACACAGAGTTCTAAGGCCT 592
Query 732 GGAATGGTGCTTCTTAAAGACTTCCTTACGCCTGATATACAGGTTGACATTGTGAAAACA 791
||||||||||||||||||| ||||||| | | ||||||||||||||||||||||||||||
Sbjct 593 GGAATGGTGCTTCTTAAAGGCTTCCTTTCACATGATATACAGGTTGACATTGTGAAAACA 652
Query 792 TGCCGAGAACTTGGTGTTAAGCCCACAGGATTTTACCAACCGGGGTATAGTGTTGGTTCA 851
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 653 TGCCGAGAACTTGGTGTTAAGCCCGCAGGATTTTACCAACCGGGGTATAGAGTTGGTTCA 712
Query 852 AAGCTTCATCTGCAAATGATGTGCCTTGGGCGAAACTGGGATCCTCAGACTAAATACAGG 911
|||||||||||||||||||||||||||||| ||||||||||||| ||||| || |||||
Sbjct 713 AAGCTTCATCTGCAAATGATGTGCCTTGGGAGAAACTGGGATCCACAGACCAAGTACAGT 772
Query 912 AAAAACACTGACATTGATAGTAAAGCACCAGAGATCCCTGTCACATTTAATGTCTTGGTA 971
|||||||||||||| |||||||||||||| || |||||||| |||||| ||||||||||
Sbjct 773 AAAAACACTGACATAGATAGTAAAGCACCCGACATCCCTGTTGCATTTAGTGTCTTGGTA 832
Query 972 GAAAAGGCGATCCGAGAGGCACATGCTCTCATAGATAGAGAATCAGGAACAGAAGATGCG 1031
|| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 GAGGAGGCGATCCGGGAAGCACATGCTCTCATAGATAGAGAATCAGGAACAGAAGATGCG 892
Query 1032 GAGAGGATACTTCCAGTGATGTCACCAGACATTTGCATAGTCAATTTCTACTCAGAAACT 1091
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 893 GAGAGGATACTTCCAGTGATGTCACCAGACATTTGCATAGTCAACTTCTACTCAGAAACT 952
Query 1092 GGAAGACTTGGTCTCCATCAGGACCGTGACGAAAGCGAAGAGAGTATAGCAAGAGGGTTG 1151
||||| |||||||||||||||||||||||||||||| |||||||||||| || |||||||
Sbjct 953 GGAAGGCTTGGTCTCCATCAGGACCGTGACGAAAGCCAAGAGAGTATAGGAAAAGGGTTG 1012
Query 1152 CCGATAGTGTCCTTCTCCATAGGTGATTCTGCAGAGTTCTTGTACGGAGAGAAGAGAGAC 1211
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 CCGATAGTCTCCTTCTCGATAGGTGATTCTGCAGAGTTCTTGTACGGAGAGAAGAGAGAC 1072
Query 1212 GTAGAAGAAGCTCAAGGAGT 1231
||||||||||| |||||||
Sbjct 1073 GTAGAAGAAGCAGAAGGAGT 1092
Score = 172 bits (93), Expect = 5e-42
Identities = 107/114 (94%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 1285 TCCATGGCGTCAAGTCAATCATACCAAACTCAGCTCCCATGTCTCTACTCAACGAGTCCA 1344
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1092 TCCATGGCGTCAAGTCCATCATACCAAACTCAGCTCCCATGTCTCTACTCAATGAGTCCA 1151
Query 1345 AGCTCCGAACAGGACGTCTCAATCTTACTTTTAGGCATTTCTAATCATCTTTCA 1398
|||||||||| ||||||||||| ||||| ||||||||||||||||| | |||||
Sbjct 1152 AGCTCCGAACCGGACGTCTCAACCTTACGTTTAGGCATTTCTAATCTTATTTCA 1205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55611757700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5