BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01790.1
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939481 jgi|Araly1|939481|scaffold_600025.1 843 0.0
> Ahg939481 jgi|Araly1|939481|scaffold_600025.1
Length=617
Score = 843 bits (456), Expect = 0.0
Identities = 567/619 (92%), Gaps = 13/619 (2%)
Strand=Plus/Plus
Query 53 tctcactctccCAAGACAATAATGCCAAACGCGGGATCTGAGCGGGCAGCTTCACTCTCA 112
||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| |||
Sbjct 1 TCTCACTCTCCAAAGACAACAATGCCAAACGCGGGATCTGAGCGGGGAGCTTCACTGTCA 60
Query 113 CTGAAAAAGCAAGACACCGCCACCTTCTCCGGTAAGCTACCGTCGACCAAACAACG-TTT 171
|||| |||||||||||| |||||||||||||||||| ||||||||||||||||||| |||
Sbjct 61 CTGAGAAAGCAAGACACGGCCACCTTCTCCGGTAAGTTACCGTCGACCAAACAACGCTTT 120
Query 172 T--TCGTCGGTATC---AGC-T--GCTTGTCCTTCCTTTAGAATCTACTACTACGACGGA 223
| ||| ||| | | ||| | |||||||||||||||||||| |||||||||||||||
Sbjct 121 TCGTCGCCGGCAACAGGAGCATCAGCTTGTCCTTCCTTTAGAATTTACTACTACGACGGA 180
Query 224 GCCGCCGGTGCCGTCCCTTTCGAATGGGAATCTCATCCAGGCACACCCAAACACCCCTCC 283
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GCCGCCGGTTCCGTCCCTTTCGAATGGGAATCTCATCCAGGCACACCCAAACACCCATCC 240
Query 284 TCTGAGCTACCTACTCTGCCACCTCTCACTCCTCCGCCGTCTCATTTCTCTTTCTCCGGC 343
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCTGAGCTACCTACTCTGCCACCTCTCACTCCTCCGCCGTCTCATTTCTCTTTCTCCGGT 300
Query 344 GACCAAATCCGCCGCCGTTCCAAAAAGTCCACCAAGAAAATCCTCGCACTAATCCCGAC- 402
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 GACCAAATCCGCCGCCGTTCCAAAAACTCCACCAAGAAAATCCTCGCACTAATCCCGACC 360
Query 403 AAGGCTCTTCTGGCTATCGGGCGATCACAATGGTAAGGCTAAGAAACTGTCGGCTTCATC 462
||| ||||||| | ||||||||||||| | | | ||||| |||||||||||||| || ||
Sbjct 361 AAG-CTCTTCTAGTTATCGGGCGATCATAGTAGCAAGGCCAAGAAACTGTCGGCATCGTC 419
Query 463 ACCACCATCTCTGTCGGAGAGAGTGTTGATCGACGAAAATGAGTACGATCTGTTCAAGTT 522
|||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 420 ACCACCATCTATGTCGGAGAGAGTGTTGATCGATGAGAATGAGTACGATCTGTTCAAGTT 479
Query 523 TCAAACAGAAAGGAATGTCATGCGAAGATTTTCATCCTTCGACTCTTCTGCTGACTACCC 582
||| | |||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 480 TCAGTCGGAAAGGAACGTCATGCGAAGATTTTCATCCTTCGACTCTTCTACTGACTACCC 539
Query 583 AATTCAGAGATCACAATCCACTTCCTGCTTCGGAATCCGCAGATGTTTCCTCTGCTAATT 642
|||||||||||||||||||| || |||||||||||||||||||||||| ||| ||||||
Sbjct 540 CATTCAGAGATCACAATCCACCTCTTGCTTCGGAATCCGCAGATGTTTCATCTACTAATT 599
Query 643 CCGCT-GCAAAATTTGGAA 660
|||| | ||||| |||||
Sbjct 600 TCGCTAG-AAAATATGGAA 617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29545260675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5