BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01800.1
Length=1078
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486888 jgi|Araly1|486888|fgenesh2_kg.6__22__AT5G01800.1 1243 0.0
> Ahg486888 jgi|Araly1|486888|fgenesh2_kg.6__22__AT5G01800.1
Length=978
Score = 1243 bits (673), Expect = 0.0
Identities = 898/1000 (90%), Gaps = 42/1000 (4%)
Strand=Plus/Plus
Query 84 GATCGGTTGCTCTCTTTCATTAATCAGATCTAATTGATACCCAAGCTTCTTCATCGGAGG 143
|||||||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 1 GATCGGTTGCTCTCTTTCATTAATCAGATCTAATTG--ACCCAA--TT-TTCATCGGAGG 55
Query 144 CCGTATCTC-A-CGAGGAAACATGGGCGGTAGATTTGGAGTCCTCCTAGTCCTCTT---C 198
||||| || | | | || ||||||||||||||||||||||||| | |||||||
Sbjct 56 CCGTAAATCAATC-A-TAATCATGGGCGGTAGATTTGGAGTCCTCTTCTTCCTCTTGGGG 113
Query 199 CTCTTGA---GC---TGGTCTTGTCATGCTACAAACCCGATTCTTCTCGAACCATTCGAA 252
| || | || ||||||||| | |||||| |||||||||||||| |||||||||||
Sbjct 114 TTATTAACCTGCTGGTGGTCTTGTGACGCTACAGACCCGATTCTTCTCCAACCATTCGAA 173
Query 253 TCAGCTCATGATGACAACCAAGTCTGTGAACTATGTGACAAGTATGTCACGCTAGTCATT 312
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| | ||||
Sbjct 174 TCAGCTCATGATGACAACCAAGTCTGTGAACTGTGTGACAAGTATGTTACGCTTGCCATT 233
Query 313 GATTACCTTCAAGACTACGACAACCAGAATGAACTCGTTGAGGCCCTTCATATCAGCTGC 372
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 234 GATTACCTTCAAGACTACGACAACCAGAATGCACTCGTCCAGGCCCTTCATATCAGCTGC 293
Query 373 TCTCAGATTCCTCCTCTCAAAAAACAGTGTCTTTCAATGGTAGATCATTACACCCAACTT 432
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 294 TCTCAGATTCCTCCTCTCAAAAAACAGTGTCTTTCCATGGTAGATCATTACACCCAACTT 353
Query 433 TTCTTCACACAAGTCTCTACTATCAAATCAGACCAAATCTGCAAACGGCTTAACCTCTGT 492
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 354 TTCTTCACACAAGTCTCTACTATCAAATCAGACCAAATCTGCAAAAGGCTTAACCTCTGT 413
Query 493 CAAGCTGTGACACCGGCCTTTGCCTCTCAAGTCCATCAAGGAAACTGCGAGGCTTGCCGC 552
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 414 CAAGCTGTGACTCCGGCCTTTGCTTCTCAAGTCCATCAAGGAAACTGCGAGGCTTGCCGC 473
Query 553 GAGACTGTCTCTGAGGTTGTCACCAAACTCAAGGATCCTGAGACTAAGCTGAAGATAATT 612
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CAGACTGTCTCCGAGGTTGTCACCAAACTCAAGGATCCTGAGACTAAGCTGAAGATAATT 533
Query 613 CGGTTACTTCTCAAGGAATGCAAGTCGCTTAACAATTACCAGGACAAGTGCAAGAAGATG 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CGGTTACTTCTCAAGGAATGCAAGTCGCTTAACAATTACCAGGACAAGTGCAAGAAGATG 593
Query 673 GTATTCGAGTACGGGCCTCTGATGCTTACGGATTTGCAGAAGTTTCTGGAGAAGAAAGAC 732
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 594 GTATTCGAGTACGGGCCTCTGATGCTTACGGATTTGGAGAAGTTTCTGGAAAAGAAAGAC 653
Query 733 GTGTGCACTATCCTCCACGTCTGTCCAGGTCCAGCCACCCACCGTGACTACGTTCCTGCG 792
|||||| ||||||||||||||||||||||||||||||||||| || |||| ||||||||
Sbjct 654 GTGTGCTTTATCCTCCACGTCTGTCCAGGTCCAGCCACCCACCATGGCTACATTCCTGCG 713
Query 793 GTGGAGTCATTGGCAGATTCGTAAATTCGGCCACCTTGGTTTTGTCGTCATTCACACTAA 852
|||||| ||||||||||||||||||| || | |||| | ||| || | |
Sbjct 714 GTGGAGGCATTGGCAGATTCGTAAATCCGACAACCTCACA-----CA-CAT--AC-C-A- 762
Query 853 TACCATGCCATG--ATCGTGATGCTAATTTAATTTGGTAACCCGGTGGTCATGTAAA--T 908
| ||||| ||| ||||| |||||||||||||||||||||| | |||||||||||| |
Sbjct 763 TGCCATGGCATATCATCGTCATGCTAATTTAATTTGGTAACCAG-TGGTCATGTAAAAAT 821
Query 909 ACTGATTGATATATTAAAAACAT-AACTACACGATTGAT-GATTCTTGTGTGATTTGAAA 966
|||||||||||||| |||||||| || ||| ||| ||| |||||| |||||||||||||
Sbjct 822 ACTGATTGATATAT-AAAAACATGAA-TACGTGAT-GATTGATTCTCGTGTGATTTGAAA 878
Query 967 AGAACGCTGTCTAAAGGCCCATTGTCCATCGATGGGCCTTTTTG-CTAATTTCTACATTG 1025
|||||| |||||||||||||||||||||| |||||| |||||| || ||||||||||||
Sbjct 879 AGAACGTTGTCTAAAGGCCCATTGTCCATTTATGGGCTTTTTTGGCTCATTTCTACATTG 938
Query 1026 CCCATGTTGTGTAGTCT-G-ATTTTCGCTAAAACGTTACG 1063
||| ||||| ||||||| | |||||| |||||||||||||
Sbjct 939 CCCTTGTTGAGTAGTCTCGGATTTTCTCTAAAACGTTACG 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40143431601
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5