BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01810.1
Length=2102
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939479 jgi|Araly1|939479|scaffold_600023.1 2025 0.0
> Ahg939479 jgi|Araly1|939479|scaffold_600023.1
Length=1315
Score = 2025 bits (1096), Expect = 0.0
Identities = 1246/1318 (95%), Gaps = 12/1318 (1%)
Strand=Plus/Plus
Query 443 CTCTAAGCTAACCAGTTAGTCAATGGAGAAGAAAGGATCTGTGTTGATGCTCCGTTATGA 502
||||||||||| |||| ||||||||||||||||||| |||||| | ||||||||||||||
Sbjct 1 CTCTAAGCTAATCAGTGAGTCAATGGAGAAGAAAGGGTCTGTGCTCATGCTCCGTTATGA 60
Query 503 GGTTGGGAAGTTTCTCGGTCAAGGTACCTTTGCTAAGGTATACCATGCTAGGCATTTGAA 562
|||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 GGTTGGCAAGTTTCTTGGTCAAGGTACCTTTGCTAAGGTATACCATGCTAGGAATTTGAA 120
Query 563 AACTGGTGATAGTGTAGCGATTAAGGTCATCGACAAAGAAAGAATCCTCAAAGTTGGCAT 622
||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 AACTGGTGATAGTGTTGCTATTAAGGTCATCGACAAAGACAGAATCCTCAAAGTTGGCAT 180
Query 623 GACCGAGCAGATTAAGCGAGAGATCTCTGCCATGAGACTCTTGAGGCATCCCAACATCGT 682
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GACCGAGCAGATTAAGCGAGAGATCTCTGTCATGAGACTCTTGAGGCATCCCAACATCGT 240
Query 683 TGAGCTCCATGAAGTCATGGCCACCAAATCTAAAATCTACTTCGTCATGGAACATGTTAA 742
||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 241 TGAGCTCCATGAAGTCATGGCCACCAAATCTAAAATCTACTTCGTGATGGAGCACGTTAA 300
Query 743 GGGTGGTGAGCTCTTCAACAAAGTGTCAACTGGGAAGCTGAGAGAAGACGTTGCGAGAAA 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGGTGGTGAGCTCTTCAACAAAGTGTCAACTGGGAAGCTGAGAGAAGACGTTGCGAGAAA 360
Query 803 GTACTTTCAGCAGCTTGTACGCGCTGTTGACTTCTGTCACAGCCGTGGAGTATGCCACAG 862
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 GTACTTTCAACAGCTTGTACGCGCTGTTGACTACTGTCACAGCCGTGGAGTATGCCACAG 420
Query 863 GGACCTGAAGCCGGAGAATCTCTTGTTGGATGAGCATGGG-AATCTTAAGATCTCTGATT 921
|||||| ||||| ||||||||||||||||||||||| ||| ||||||||| |||||||||
Sbjct 421 GGACCTCAAGCCTGAGAATCTCTTGTTGGATGAGCA-GGGTAATCTTAAGGTCTCTGATT 479
Query 922 TTGGTCTCAGCGCTCTTTCTGACTCTAGAAGGCAAGACGGGTTGCTGCATACTACATGCG 981
||||||||||||||||| ||||||||| ||||||||| ||||||||||| ||||||||||
Sbjct 480 TTGGTCTCAGCGCTCTTGCTGACTCTACAAGGCAAGATGGGTTGCTGCACACTACATGCG 539
Query 982 GGACCCCTGCATATGTTGCACCGGAGGTGATAAGCAGGAACGGG-TATGATGGGTTTAAA 1040
|||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct 540 GGACCCCTGCATATGTTGCACCGGAGGTCATAAGCAGGAG-GGGCTATGATGGGTTTAAA 598
Query 1041 GCGGATGTGTGGTCCTGTGGAGTGATATTGTTCGTCTTGCTCGCTGGATATCTTCCTTTC 1100
||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 599 GCGGATGTGTGGTCCTGTGGAGTGATATTGTTCGTCTTGCTTGCGGGATATCTCCCTTTC 658
Query 1101 CGTGATTCCAATCTGATGGAGCTGTATAAGAAGATAGGCAAAGCTGAAGTCAAGTTCCCC 1160
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 659 CGTGATTCCAATCTCATGGAGCTGTATAAGAAGATAGGCAAAGCTGAGGTCAAGTTCCCC 718
Query 1161 AACTGGCTTGCTCCGGGGGCAAAGAGATTGCTCAAGAGGATCTTGGATCCTAACCCCAAC 1220
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 719 AACTGGCTTGCTCCGGGGGCAAAGAGATTGCTCAAGAGGATTTTTGATCCTAACCCAAAC 778
Query 1221 ACAAGGGTATCAACTGAGAAAATAATGAAGAGCTCTTGGTTCCGTAAAGGCCTACAA--G 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 779 ACAAGGGTATCAACTGAGAAAATAATGAAGAGCTCTTGGTTCCGTAAAGGCCTACAACTG 838
Query 1279 -A-G--GAGGTGAAAGAATCAGTTGAGGAAGAGACAGAAGTGGACGCAGAGGC-AGAGGG 1333
| | |||| ||||||||||||||| ||||||||||||||||| | |||| | | | |
Sbjct 839 CAAGACGAGGAGAAAGAATCAGTTGACGAAGAGACAGAAGTGGAGGTAGAGACTA-ACGC 897
Query 1334 AAACGCAAGTGCAGAGAAGGAAAAGAAGCGGTGTATCAACCTGAACGCGTTTGAGATCAT 1393
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 898 AAACGCAAGTGCAGAGAAGGAAAAGAAGCGGTGTATCAACCTGAACGCATTTGAAATAAT 957
Query 1394 ATCTCTGTCCACGGGGTTTGATCTCTCGGGACTGTTCGAGAAGGGAGAGGAGAAGGAGGA 1453
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 958 ATCGCTGTCGACGGGGTTTGATCTCTCGGGGCTGTTCGAGAAGGGAGAGGAGAAGGAGGA 1017
Query 1454 GATGAGGTTTACATCAAACAGAGAGGCATCTGAGATAACAGAGAAGCTGGTGGAGATTGG 1513
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1018 GATGAGGTTTACATCGAACAGAGAGGCATCTGAGATAACAGAGAAGCTGGTGGTGATAGG 1077
Query 1514 GAAGGACCTTAAGATGAAAGTGAGGAAGAAGGAACACGAATGGAGGGTGAAAATGTCGGC 1573
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1078 GAAGGAGCTTAAGATGAAAGTGAGGAAGAAGGAACAAGAATGGAGGGTGAAAATGTCGGC 1137
Query 1574 TGAGGCTACAGTGGTGGAAGCGGAAGTGTTTGAGATTGCGCCGAGCTATCACATGGTGGT 1633
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1138 TGAGGCTACAGTGGTGGAAGCGGAGGTGTTTGAGATTGCACCGAGCTATCACATGGTGGT 1197
Query 1634 GCTAAAGAAGAGCGGTGGAGATACTGCTGAGTATAAGAGAGTCATGAAGGAGAGTATAAG 1693
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1198 GCTAAAGAAGAGCGGTGGAGATACGGCGGAGTATAAGAGAGTCATGAAGGAGAGTATAAG 1257
Query 1694 ACCGGCTTTGATCGACTTTGTATTAGCTTGGCACTGAAACATATTCTATCctttttat 1751
|||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||
Sbjct 1258 ACCGGCTTTGATCGACATTGTATTAGCTTGGCACTGAAACATAATCTATTCTCTTTAT 1315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79075348620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5