BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01820.1
Length=1808
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486886 jgi|Araly1|486886|fgenesh2_kg.6__20__AT5G01820.1 2444 0.0
Ahg482859 jgi|Araly1|482859|fgenesh2_kg.4__1919__AT2G38490.1 250 3e-65
> Ahg486886 jgi|Araly1|486886|fgenesh2_kg.6__20__AT5G01820.1
Length=1785
Score = 2444 bits (1323), Expect = 0.0
Identities = 1613/1746 (92%), Gaps = 48/1746 (3%)
Strand=Plus/Plus
Query 1 ATCTCTTATCCGAAT-CC----TCCCAATTTGTCTGTCTCTCTTTTGTTTTCTCTGCTAA 55
||||||||||||||| || | | || ||||| |||||||||||||||||||| |||
Sbjct 1 ATCTCTTATCCGAATCCCAATTTGTCTATCTGTCTCTCTCTCTTTTGTTTTCTCTGTTAA 60
Query 56 CAGATCTCT-CTAAATATCTGTTACTTTTGTTCATATCTTTTTACTT-TTCAAACTACTA 113
|||||||| |||||||||||||||||||||||||| |||||||| ||||||||| ||
Sbjct 61 AAGATCTCTAAAAAATATCTGTTACTTTTGTTCATATC-TTTTACTTGTTCAAACTATTA 119
Query 114 -ATTTTCCTTTCGCTTCTTCTATTAATA-AC-AACACTCTCTCTCTCAGACTTCTTTTCt 170
|||||||||||||||||||||||||| || |||||||||||||||||| |
Sbjct 120 GTTTTTCCTTTCGCTTCTTCTATTAATATACAAACACTCTCTCTCTCAGA--------C- 170
Query 171 tttttttCTACGGCGTTGATTCATTCGC-A-----A---TGACCTCAGTTTCTGTGTACC 221
|||||||||||||||||||||||||| | | ||| |||| |||||| |||||
Sbjct 171 --TTTTTCTACGGCGTTGATTCATTCGCTATGTTTACGCTGAACTCATTTTCTGGGTACC 228
Query 222 ATAATTGACCTAGCAGATTCTGTTTTTAATGGTAGATTCTGACCCGGTGGAATTTCCGCC 281
||||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 229 GTAATTGACCAAGGAGATTCTG-TTTTAATGGTAGATTCTGACACGGTGGAATTTCCGCC 287
Query 282 GGAGAACCGCCGTGGACAGCTCTTCGGCAAATACGAGGTCGGAAAATTGGTGGGATGCGG 341
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 288 GGAGAACCGCCGTGGACAGCTCTTCGGTAAATACGAGGTCGGCAAATTGGTGGGATGCGG 347
Query 342 CGCCTTCGCGAAAGTGTACCACGGGAGGAGCACAGCGACGGGTCAGAGCGTTGCGATCAA 401
||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 348 CGCCTTCGCTAAAGTGTACCACGGGAGGAACACAGCGACGGGTCAGAGCGTCGCGATCAA 407
Query 402 AGTGGTGAGCAAGCAACGGCTGCAGAAAGGAGGACTCAATGGCAACATTCAGAGAGAGAT 461
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 408 AGTGGTGAGCAAGCAACGGCTGCAGAAAGGAGGCCTCAATGGCAACATTCAGAGGGAGAT 467
Query 462 CGCTATCATGCACCGTCTGCGCCACCCTTCTATCGTGCGCCTGTTCGAGGTCCTCGCCAC 521
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 468 CGCTATCATGCACCGTCTCCGCCACCCTTCTATCGTGCGCCTGTTCGAGGTCCTCGCCAC 527
Query 522 CAAATCCAAGATCTTCTTCGTCATGGAATTCGCCAAGGGCGGTGAGCTATTCGCCAAAGT 581
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 528 CAAATCCAAGATCTTCTTCGTCATGGAATTCGCCAAAGGCGGTGAGCTCTTCGCCAAAGT 587
Query 582 CTCCAAGGGCAGGTTCTGCGAGGATCTTAGCCGTCGTTATTTCCAGCAGCTCATCTCCGC 641
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 588 CTCCAAGGGCAGGTTCTGCGAGGATCTCAGCCGTCGCTATTTCCAGCAGCTCATCTCCGC 647
Query 642 CGTCGGATATTGCCACTCCCGCGGCATCTTTCACCGTGATCTCAAACCGGAGAATCTCCT 701
||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 648 CGTCGGATACTGCCACTCCCGCGGCATCTTTCACCGTGACCTCAAACCTGAGAATCTCCT 707
Query 702 CCTCGACGAGAAGCTCGATTTGAAGATCTCTGATTTCGGACTCAGCGCTCTTACCGATCA 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 CCTCGACGAGAAGCTCGATTTGAAGATCTCTGATTTCGGACTCAGCGCTCTTACCGATCA 767
Query 762 GATCCGACCCGACGGCCTCCTCCACACACTCTGTGGTACGCCGGCGTACGTGGCGCCTGA 821
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 768 GATCCGACCCGACGGCCTCCTCCACACCCTCTGTGGTACGCCGGCATACGTGGCGCCGGA 827
Query 822 GGTTTTGGCGAAGAAAGGGTACGACGGTGCTAAAATCGACATATGGTCATGTGGAATCAT 881
|||| ||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 828 GGTTCTGGCGAAGAAAGGCTACGACGGTGCTAAAATCGACATTTGGTCATGCGGAATCAT 887
Query 882 ACTGTTCGTCCTCAACGCCGGTTATCTCCCTTTCAACGACCATAATCTCATGGTTATGTA 941
| |||| || ||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 888 ATTGTTTGTTCTCAACGCCGGTTATCTGCCTTTCAACGACCATAACCTCATGGTCATGTA 947
Query 942 CCGGAAAATCTACAAGGGAGAATTTCGCATTCCCAAGTGGACCTCACCGGATCTCCGGCG 1001
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 948 CCGGAAAATCTACAAGGGAGAGTTTCGCATTCCCAAGTGGACCTCACCGGATCTCCGGCG 1007
Query 1002 ACTGCTGACTCGGCTTTTAGACACGAATCCGCAGACGAGGATCACTATCGAAGAGATCAT 1061
||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 ACTTCTGACTCGGCTTCTCGACACGAATCCGCAGACGAGGATCACTATCGAAGAGATCAT 1067
Query 1062 CCACGATCCATGGTTCAAACAGGGCTACGACGATCGGATGTCTAAATTCCATCTAGAGGA 1121
|||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 1068 CCACGATCCATGGTTCAAACAGGGCTACGACGATCGGATGTCAAAATTCCACCTCGAGGA 1127
Query 1122 CTCCGATATGAAACTCCCGGCGGACGAGACCGACAGCGAGATGGGAGCAAGGAGGATGAA 1181
||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||
Sbjct 1128 CTCCGATATGAAACTCCCGGCGGACGATATCGACGGCGAGATGGGAGCAAGGAGGATGAA 1187
Query 1182 CGCATTCGACATCATCTCAGGATCTCCAGGGTTCAATCTCTCCGGTCTTTTCGGAGACGC 1241
|||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct 1188 CGCATTCGACATCATCTCAGGATCCCCAGGATTCAATCTCTCCGGTCTGTTCGGCGACGC 1247
Query 1242 CAGAAAGTACGACCGAGTGGAACGGTTCGTGTCGGCGTGGACGGCGGAGAGGGTGGTGGA 1301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 TAGAAAGTACGACCGAGTGGAACGGTTCGTGTCGGCGTGGACGGCGGAGAGGGTGGTGGA 1307
Query 1302 GAGGCTGGAGGAGATCGTGTCGGCGGAGAATCTGACGGTGGCGAAGAAGGAAACATGGGG 1361
|| |||||| ||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 1308 GAAGCTGGAAGAGATCGTGTCGGCGGAGAATCTGACGGTGGCGGCGAAGGAGGCGTGGGG 1367
Query 1362 GATGAAGATCGAGGGGCAAAAAGGTAACTTCGCAATGGTGGTTGAGATAAACCAGCTAAC 1421
||||||||| || |||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 1368 GATGAAGATTGAAGGGCAAAAAGGTAATTTCGCGATGGTGGTCGAGATAAACCAGCTAAC 1427
Query 1422 GGACGAGCTGGTTATGATAGAGGTGAGGAAGAGACAAAGAGCCGCTGCATCTGGACGAGA 1481
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1428 GGACGAGCTGGTTATGATAGAGGTGAGGAAGAGGCAAAGAGCCGCTGCATCTGGACGAGA 1487
Query 1482 TTTATGGACAGATACACTCAGGCCTTTCTTCGTCGAGCTTGTGCACGAATCAGACCAAAC 1541
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1488 TCTATGGACAGATACACTCAGGCCTTTCTTCGTCGAGCTTGTGCACGAACCAGACCAGAC 1547
Query 1542 GGACCCA---GAACCAACTCAAGTACATACGACGTCGTAGTTTAGGTATCTGTCAAA-TA 1597
|||||| |||||| ||| |||| ||||||||||||||||||||||||||||||| ||
Sbjct 1548 GGACCCTCCTGAACCATCTCTAGTAAATACGACGTCGTAGTTTAGGTATCTGTCAAAATA 1607
Query 1598 AATTATCCAAATAATAATTaaaaaaa-a-aTATCCCGGGTTATATGTAATTGCttttttt 1655
| |||||| |||||||||||||||| | |||||||||||||| |||||||| |||||||
Sbjct 1608 A-TTATCCCCATAATAATTAAAAAAATATATATCCCGGGTTATCTGTAATTGTTTTTTTT 1666
Query 1656 ttt-----ACCCGGAGAATATCTCTGACATAATTA-TT---CAGGAAATTTCTCGACAAA 1706
||| ||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1667 TTTTTTTTACCCGGAGAATATCTCTGACATAATTAATTATTCAGGAAATTTCTCGACAAA 1726
Query 1707 TCTTAA 1712
||||||
Sbjct 1727 TCTTAA 1732
> Ahg482859 jgi|Araly1|482859|fgenesh2_kg.4__1919__AT2G38490.1
Length=1689
Score = 250 bits (135), Expect = 3e-65
Identities = 398/522 (76%), Gaps = 30/522 (6%)
Strand=Plus/Plus
Query 452 AGAGAGAGATCGCTATCATGCACCGTCTGCGCCACCCTTC-TATCGTGCGCCTGTTCGAG 510
||||||||||| || |||||| |||||| || || || || |||||||| ||| | |||
Sbjct 285 AGAGAGAGATCTCTGTCATGCGCCGTCTTCGTCATCC-TCATATCGTGCTCCTCTCCGAA 343
Query 511 GTCCTCGCCACCAA-ATCCAAGATCT-TCTTCGTCATGGAATTCGCCAAGGGCGGTGAGC 568
|||||||||||||| | | ||||||| | ||||||||||| | ||||| ||||| ||||
Sbjct 344 GTCCTCGCCACCAAGA-CGAAGATCTAT-TTCGTCATGGAGCTAGCCAAAGGCGGCGAGC 401
Query 569 TATTCGCCAAAGTCTCCAAG-GGCAGGTTCTGC-GAGGA-TCTTAGCCGTCGTTATTTCC 625
| ||| ||| |||| | || | | ||| | || || ||| ||||| |||||||
Sbjct 402 TTTTCTCCAGAGTC-ACTAGCAACCGTTTC-ACGGA-GAGTCTCAGCCGGAAATATTTCC 458
Query 626 AGCAGCTCATCTCCGCCGTCG-GATATTGCCACTCCCGCGGCA-TCTTTCACCGTGATCT 683
|||| | ||||||||||| | |||| |||||| | | || | | |||||||||||| |
Sbjct 459 GGCAGTTGATCTCCGCCGT-GAGATACTGCCACGCAAGAGG-AGTTTTTCACCGTGATTT 516
Query 684 CAAACCGGAGAATCTCCTCCTCGACGAGAAGCTCGATTTGAAGATCTCTGATTTCGGACT 743
||||||||||||||||||||||||||||| | ||| ||||| | || || ||||| ||
Sbjct 517 GAAACCGGAGAATCTCCTCCTCGACGAGAATCGAGATCTGAAGGTTTCAGACTTCGGTCT 576
Query 744 CAGCGCTCTTACCGATCAGATCCGACCCGACGGCCTCCTCCACACACTCTGTGGTACGCC 803
||| || | | || ||||| || |||||||| | || ||||| || ||||| || ||
Sbjct 577 CAGTGCGATGAAGGAACAGATTCGTCCCGACGGGATGCTACACACGCTTTGTGGAACTCC 636
Query 804 GGCGTACGTGGCGCCTGAGGTT-TTGGCGAAGAAAGGGTACGACGGTGCTAAAA-TCGAC 861
||| ||||| || || ||| || || ||||||||| ||||||||| ||||| | ||
Sbjct 637 GGCTTACGTTGCACCGGAGCTTCTTTT-GAAGAAAGGCTACGACGGTTCTAAAGCT-GAT 694
Query 862 ATATGGTCATGTGGAATCATACTGTTCGTCCTCAACGCCGGTTATCTC-CC-TTTCAACG 919
|| |||||||| || || | ||||| | |||||||||||||| || || |||| |
Sbjct 695 ATTTGGTCATGCGGCGTCGTTTTGTTCCTTCTCAACGCCGGTTA-CTTGCCGTTTCGT-G 752
Query 920 A-CCATAATC-TCATGGTTA-TGTACCGGAAAATCTACAAGG 958
| ||| || | |||||| | | |||||||||||| ||||||
Sbjct 753 ATCCA-AA-CATCATGGG-ACTATACCGGAAAATCCACAAGG 791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67876816590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5