BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01830.1
Length=2475
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486885 jgi|Araly1|486885|fgenesh2_kg.6__19__AT5G01830.1 3046 0.0
> Ahg486885 jgi|Araly1|486885|fgenesh2_kg.6__19__AT5G01830.1
Length=2227
Score = 3046 bits (1649), Expect = 0.0
Identities = 1922/2051 (94%), Gaps = 30/2051 (1%)
Strand=Plus/Plus
Query 289 ATGGCTGTTACTCTTGATTCTCCTTCTCCGGCGAGAAAACGTCGCCCTTTGGTCGTCGGG 348
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
Sbjct 152 ATGGCTGTTACTCTTGATTCTGCTTTTCCGGCGAGAAAACGTCGCCCTTTGGTCGTC--G 209
Query 349 TCATTCGAATCTCCGAAGCTTTCTTCAGATACCAAACTGACTCGGTCTCTGTTTCTGGCG 408
|||| || || |||||||| | ||| ||||||| |||||||||||||| |||||
Sbjct 210 --ATTC---TC-CC-AAGCTTTC-T--GATGCCAAACTTACTCGGTCTCTGTTCCTGGCC 259
Query 409 TCTCATGAGATTTCTTCTATGCAGCCTCTCC-CATTCATTCTCCGACGCAATTCTCTCTC 467
||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 260 TCTCATGAGATTTCTTCTATGCAGCCTCTCCGC-TTCATCCTCCGACGCAATTCTCTCTC 318
Query 468 CCTCATTCGCAAAGTGAAGATATTAGCTTCCGTCTTCGATGAGCTTCTTCTCCCTCGTTC 527
||||||||||||||| ||||| |||||||||||||||||||||||||||| | || ||
Sbjct 319 CCTCATTCGCAAAGTCAAGATCCTAGCTTCCGTCTTCGATGAGCTTCTTCT--C-CGCTC 375
Query 528 CCAACTTG-TCGTCTACTCTCAATCCGCTCATCTCTGCTTCGAAGAAATGCAAATCGTTA 586
||| | || |||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 376 CCAGC-TGCTCGTCTACTCTCAATCCGCTCAGCTCTGCTTCGAGGAAATGCAAATCGTTA 434
Query 587 TGCAACGTATCAAGTCTTTGATCGATGACTGTTCTCGTGTTAGCAAACTCTGGCTACTCT 646
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 435 TGCAACGTATCAAGTCTTTGATCGATGACTGCTCTCGTGTTAGCAAACTCTGGTTACTCC 494
Query 647 TGCAGATCGACATCGTTGCCTTCAACTTTCACGAGCTTGTCACCGATTTATCCACCGTTC 706
|||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 495 TGCAGATCGATATCGTTGCCTTCAACTTTCACGAGCTTCTCACCGATTTGTCCACCGTTC 554
Query 707 TTGATATTTTACCGCTCCATGACTTTGACCTCAGCGACGACGCCCAAGATCTCATCTCTC 766
|||||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||||
Sbjct 555 TTGATATTTTACCGGTCCATGAATTTGACTTAAGCGACGACGCCCAAGATCTCATCTCTC 614
Query 767 TCCTTACAAAACAATGCTCCGATTCTGTTCAGTTCGTCGACGCCCGCGACGTTGCTCTCC 826
||||| ||||||||||||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct 615 TCCTTGGAAAACAATGCTCCGACTCTGTTCAGTTCGTCGATGCCCGCGACGATGCTCTCC 674
Query 827 GTCGTAAAGTCACCGATACAATCGCCGGGATCAAGCACCAGATCTCACCGGATCACTCTA 886
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 675 GTCGTAAAGTCACCGATACCATCGCCGGCATCAAGCACCAGATCTCACCGGATCACTCTA 734
Query 887 -CTCTCATCAAGATTTTCAACGACCTTGGTTT-ATCCGATTCTGCTAGTTTGACCGACGA 944
| || ||| |||||||||||||||||||||| | |||||||||||| ||||||||||||
Sbjct 735 GC-CTGATCGAGATTTTCAACGACCTTGGTTTCA-CCGATTCTGCTACTTTGACCGACGA 792
Query 945 AATTCAGAGATTGGAAGACGAGATTCAGGATCAGATCGACGACAGATCCAAATCCGCAGC 1004
||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 793 AATCCAGAGATTAGAGGACGAAATTCAGGATCAGATCGACGACAGATCCAAATCCGCAGC 852
Query 1005 CGCCTCTCTTATCGGACTCGTCCGTTACTCTAAGTGCGTCTTATACGGTCCCTCCACGCC 1064
||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 853 CGCTTCTCTCATCGGACTCGTGCGTTACTCTAAGTGCGTCTTATACGGTCCCTCTACGCC 912
Query 1065 GGCTCCAGATTTCCGCCGCCACCAATCCTTATCTGACGCTAACATCCCCGCGGATTTCCG 1124
|||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 913 GGCTCCCGATTTCCGCCGCCACCAATCCTTATCCGACGCAAACATCCCCGCGGATTTCCG 972
Query 1125 GTGTCCGATCACCCTCGAGCTGATGCGGGATCCGGTGGTGGT-TGCCACCGGTCAAACAT 1183
||||||||||||||||||||| ||||||||||||||||| || | |||||||||||||||
Sbjct 973 GTGTCCGATCACCCTCGAGCTTATGCGGGATCCGGTGGTCGTCT-CCACCGGTCAAACAT 1031
Query 1184 ACGATAGAGAGTCCATCGATCTTTGGATCCAATCGGGGCATAACACGTGTCCGAAAACAG 1243
||||| | ||||| |||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1032 ACGATCGTGAGTCGATCGATCTATGGATCCAATCGGGGCACAACACGTGTCCGAAAACAG 1091
Query 1244 GTCAAGTCCTCAAACACACCAGCCTCGTACCTAACCGTGCCTTGAAGAACCTCATCGTTT 1303
|||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||
Sbjct 1092 GTCAAGTCCTCAAACACACCAGCCTCATACCAAACCGTGCCTTGAAGAACCTGATCGTTT 1151
Query 1304 TGTGGTGCCGCGATCAGAAGATACCGTTCGAATTATACGGTGACGGCGGCGGAGAACCTG 1363
|||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1152 TGTGGTGCCGCGATCACAAGATACCCTTCGAGCTATACGGTGACGGCGGCGGAGAACCTG 1211
Query 1364 CGCCGTGCAAGGAGGCGGTGGAGTTTACGAAGATGATGGTTTCGTTTCTCATCGAGAAGC 1423
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 CGCCGTGCAAGGAGGCGGTCGAGTTTACGAAGATGATGGTTTCGTTTCTCATCGAGAAGC 1271
Query 1424 TCTCCGTGGCAGATTCTAACGGTGTCGTGTTCGAGCTCCGGGCGCTCGCAAAGTCAGATA 1483
||||| |||||||||||||||||||||| || |||||||||||||| || ||||||||||
Sbjct 1272 TCTCCTTGGCAGATTCTAACGGTGTCGTTTTTGAGCTCCGGGCGCTAGCCAAGTCAGATA 1331
Query 1484 CTGTGGCCCGAGCCTGCATAGCCGAGGCTGGAGCCATACCCAAGCTGGTTCG-TTATCTA 1542
| ||||||||||| |||||||||||||||||||||||||| |||||||| || || ||||
Sbjct 1332 CGGTGGCCCGAGCATGCATAGCCGAGGCTGGAGCCATACCGAAGCTGGTACGCTT-TCTA 1390
Query 1543 GCCACAGAGTGCCCGAGCCTTCAGATAAACGCCGTTACGACGATCCTAAACCTATCCATC 1602
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1391 GCCACGGAGTGCCCGAGCCTTCAGATAAACGCCGTTACGACGATCCTAAACCTCTCCATC 1450
Query 1603 CTGGAACAGAACAAAACGAGGATCATGGAAACTGACGGAGCTTTAAACGGCGTCATCGAG 1662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 CTGGAACAGAACAAAACGAGGATCATGGAAACTGACGGAGCTTTAAACGGCGTCATCGAG 1510
Query 1663 GTTCTTCGTTCGGGTGCCACGTGGGAGGCTAAGGCTAACGCAGCCGCGACAT-TGTTCAG 1721
|||||||||||||| |||||||||||||||||||||||||| || ||||| | |||||||
Sbjct 1511 GTTCTTCGTTCGGGCGCCACGTGGGAGGCTAAGGCTAACGCCGCTGCGAC-TCTGTTCAG 1569
Query 1722 TTTGGCGGGCGTCTCGGCATACAGAAGAAGACTCGGGAGAAAAGCACGTGTCGTAAGCGG 1781
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1570 TTTGGCGGGCGTCTCGGCCTACCGAAGAAGACTCGGGAGAAAAGCACGTGTCGTAAGCGG 1629
Query 1782 ATTGGTTGACTTGGCTAAGCAGGGCCCCACCAGCTCTAAGAGAGACGCGCTCGTGGCGAT 1841
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1630 GTTGGTTGACTTGGCTAAGCAGGGCCCCACCAGCTCTAAGAGAGACGCGCTCGTGGCGAT 1689
Query 1842 CCTAAACCTGGTGGCTGAGAGAGAGAACGTGGGGAGGTTCGTTGAGGCTGGGGTAATGGG 1901
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1690 CCTGAACCTGGTGGCTGAGAGAGAGAACGTGGGGAGGTTCGTTGAAGCTGGGGTAATGGA 1749
Query 1902 AGCCGCAGGAGATGCATTCCAGGAGCTACCGGAGGAAGCGGTGGCTGTCGTGGAGGCGGT 1961
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1750 AGCAGCCGGAGATGCATTCCAGGAGCTACCGGAGGAAGCGGTGGCTGTCGTGGAGGCGGT 1809
Query 1962 GGTCAGGAGGGGAGGACTCATGGCGGTTTCTGCCGCTTTCAGTTTGATTCGACTTTTGGG 2021
|||||||||||| ||||||||||||||||| || |||||||||||||| || ||||||||
Sbjct 1810 GGTCAGGAGGGGTGGACTCATGGCGGTTTCAGCTGCTTTCAGTTTGATACGGCTTTTGGG 1869
Query 2022 GGAGGTGATGAGAGAAGGAGCGGATACCACAAGGGAGAGTGCGGCGGCAACGCTGGTCAC 2081
|||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 1870 GGAGGTGATGAGGGAAGGAGCGGACACCACAAGGGAGAGCGCGGCGGCGACGCTGGTCAC 1929
Query 2082 GATGTGTCGGAAAGGAGGGTCGGAGCTAGTGGCGGAGATGGCGGCTATTCCAGGGATAGA 2141
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1930 GATGTGTCGGAAAGGGGGGTCGGAGCTAGTGGCGGAGATGGCGGCGATTCCAGGGATAGA 1989
Query 2142 GAGGGTTATATGGGAGATGATAGGAGCTGGAACGGCCAGGGGAGGGAGGAAAGCGGCGTC 2201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1990 GAGGGTTATATGGGAGATGATAGGAGCTGGAACGGCCAGGGGAGGGAGGAAAGCGGCGTC 2049
Query 2202 ATTGATGAGATATCTAAGACGGTGGGCCGCCGGAGATACCCATAACACGGCGGCGGAAAC 2261
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||
Sbjct 2050 GTTGATGAGATATCTAAGACGGTGGGCCGCCGGAGATACACATGACACGGCGGCGGAGAC 2109
Query 2262 GCAGAGCATTGTAGTGCCAACGCCAAGTAGGAtttttagtccagttttatgatttttcat 2321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2110 GCAGAGCATTGTAGTGCCAACGCCAAGTAGGATTTTTAGTCCAGTTTTATGATTTTTTTT 2169
Query 2322 ttttttgtttt 2332
|||||| ||||
Sbjct 2170 TTTTTT-TTTT 2179
Score = 174 bits (94), Expect = 2e-42
Identities = 122/134 (91%), Gaps = 8/134 (6%)
Strand=Plus/Plus
Query 5 GGAATGTTTGACCTCTCGCCTCTCGTGCTCCTCTG-------TAAGGCGGCTTTGTCCTC 57
|||||||||||||||| |||||| | ||||||||| ||||||||||||||||||
Sbjct 1 GGAATGTTTGACCTCTTGCCTCTGGGGCTCCTCTGTAATCTATAAGGCGGCTTTGTCCTC 60
Query 58 TCTGCGACTGACTGACTTCTTCTGACGGCTCCGTCCACCGTCGTCTCTTCTTCCGTTACG 117
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGTGCGACTGACTGACTTCTTCTGACGGCTCCGTCCACCGTCGTCTCTTCTTCCGTTACG 120
Query 118 ACTTTTTCTT-CCA 130
|||||||||| |||
Sbjct 121 ACTTTTTCTTGCCA 134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93283010005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5