BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01850.1
Length=1784
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324798 jgi|Araly1|324798|fgenesh1_pm.C_scaffold_6000018 1386 0.0
> Ahg324798 jgi|Araly1|324798|fgenesh1_pm.C_scaffold_6000018
Length=1014
Score = 1386 bits (750), Expect = 0.0
Identities = 912/988 (92%), Gaps = 19/988 (2%)
Strand=Plus/Plus
Query 509 CGATTGAGGAGAGTTTGCTTGTGGATCCCAAATTGTTGTTCATCGGCTCCAAGATTGGTG 568
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 44 CGATTGATGAGAGTTTGCTTGTGGATCCCAAATTGTTGTTCATCGGCTCCAAGATTGGTG 103
Query 569 AAGGCGCTCACGGCAAAGTCTACCAAGGAAGGTATGGTCGTCAGATTGTTGCAATCAAAG 628
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 104 AAGGCGCTCACGGCAAAGTCTACCAAGGAAGGTATGGTAGCCAGATTGTTGCAATCAAAG 163
Query 629 TTGTCAACCGGGGCTCCAAACCTGACCAGCAATCTTCTCTCGAGAGCCGTTTCGTCCGTG 688
|| || |||| ||| ||||||||||| || ||||||||||||||||||||||| |||| |
Sbjct 164 TTCTCCACCGCGGCACCAAACCTGACGAGAAATCTTCTCTCGAGAGCCGTTTCATCCGCG 223
Query 689 AGGTCAATATGATGTCCCGCGTTCAACACCATAACCTTGTCAAGTTTATTGGAGCGTGCA 748
| |||||||||||||||||||||||||| ||||||| |||||||||||||| || ||||
Sbjct 224 AAGTCAATATGATGTCCCGCGTTCAACATGATAACCTCGTCAAGTTTATTGGCGCCTGCA 283
Query 749 AAGATCCTTTAATGGTAATAGTAACAGAGCTTCTCCCAGGGATGTCTCTCCGTAAATATC 808
|||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 284 AAGATCCTTTAATGGTTATAGTAACTGAGCTTCTCCCTGGGATGTCCCTCCGTAAATATC 343
Query 809 TCACCAGCATCCGTCCTCAGTTGCTCCATCTCC-CTCTTGCTCTCTCCTTTGCCCTTGAC 867
| |||||||||||||| ||| |||||||||||| | || |||||| |||||||||||||
Sbjct 344 TTACCAGCATCCGTCCCCAGATGCTCCATCTCCGCACT-GCTCTCAGCTTTGCCCTTGAC 402
Query 868 ATCGCCCGTGCCTTGCACTGCTTACACGCCAATGGTATCATTCACAGAGACCTCAAACCT 927
|| ||||||||| || ||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 403 ATTGCCCGTGCCCTGGACTGCTTACACGCCAATGGAATCATACACAGAGACCTCAAACCT 462
Query 928 GACAACTTATTGCTCACGGAGAATCACAAATCCGTCAAGCTTGCTGATTTCGGGCTTGCT 987
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 463 GACAACTTATTACTCACCGAGAATCACAAATCCGTCAAGCTTGCTGATTTTGGGCTTGCT 522
Query 988 AGGGAAGAATCCGTGACTGAGATGATGACTGCTGAGACTGGGACTTACCGTTGGATGGCT 1047
||||||||| |||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 523 AGGGAAGAAACCGTCACTGAGATGATGACTGCAGAGACTGGGACATACCGTTGGATGGCT 582
Query 1048 CCTGAGCTCTACAGTACAGTGACCCTGCGTCAAGGAGAGAAGAAGCATTACAACAACAAA 1107
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 583 CCTGAGCTCTACAGTACAGTCACGCTGCGTCAAGGGGAGAAGAAGCATTACAACAACAAA 642
Query 1108 GTTGATGTCTACAGCTTTGGAATCGTGCTTTGGGAGCTTCTCACTAATCGTATGCCATTC 1167
|||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 643 GTTGATGTCTACAGCTTTGGGATTGTGCTATGGGAGCTTCTCACTAATCGTATGCCATTT 702
Query 1168 GAGGGCATGTCCAATCTGCAAGCCGCCTACGCAGCAGCATTCAAGCAGGAGAGGCCCGTA 1227
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 703 GAGGGCATGTCCAACCTGCAAGCCGCCTACGCAGCTGCATTCAAGCAGGAGAGGCCGGGA 762
Query 1228 ATGCCAGAGGGGATATCTCCGAGTCTGGCGTTCATAGTGCAGTCTTGTTGGGTGGAGGAC 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 ATGCCAGAGGGGATATCTCCGAGTCTGGCGTTCATAGTGCAGTCTTGTTGGGTGGAGGAC 822
Query 1288 CCAAACATGAGGCCAAGCTTCAGTCAAATTATCAGACTGCTCAATGAGTTCCTCCTTACC 1347
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 823 CCAAACATGAGGCCAAGCTTCAGCCAAATTATCAGACTGCTCAATGAGTTCCTCCTTACC 882
Query 1348 CTGACTCCTCCGCCTCCTCAGCCTCTGCCTGAGACTGCCACCAACAGGACCAATGGCCGA 1407
||||||||||||||| || |||| | | |||||||||||||| ||| ||
Sbjct 883 CTGACTCCTCCGCCTG---AG--TCTG----A--C----ACCAACAGGACCAACGGCAGA 927
Query 1408 GCCATCACTGAGTTCTCCATCCGTC-CAAAAGGGAAATTTGCCTTCATTCGCCAGCTTTT 1466
||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| ||
Sbjct 928 GCCATCACTGAGTTCTCCAGCCG-CGCAAAAGGGAAATTTGCCTTCATTCGCCAGCTCTT 986
Query 1467 CGCTGCCAAGAGGAACATAAACTCTTAG 1494
|||||| |||||||||||||||||||||
Sbjct 987 CGCTGCTAAGAGGAACATAAACTCTTAG 1014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66962650710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5