BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01860.1
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486883 jgi|Araly1|486883|fgenesh2_kg.6__17__AT5G01860.1 671 0.0
> Ahg486883 jgi|Araly1|486883|fgenesh2_kg.6__17__AT5G01860.1
Length=675
Score = 671 bits (363), Expect = 0.0
Identities = 441/477 (92%), Gaps = 12/477 (3%)
Strand=Plus/Plus
Query 175 AGAAACGAGGCTAAAGCGAGGGTGTTTGCTTGCACCTTCTGCAAAAAAGAGTTCTCTACG 234
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 AGAAATGAGGCTAAAGCGAGGGTGTTTGCTTGCACCTTCTGCAAAAAAGAGTTCTCTACG 267
Query 235 TCTCAAGCCTTAGGAGGACATCAGAACGCTCACAAGCAAGAGCGATCATTGGCTAAAAGG 294
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 268 TCTCAAGCCTTAGGAGGACATCAGAACGCTCACAAGCAAGAGCGATCACTGGCTAAAAGG 327
Query 295 CGTAAAGAGATCGAAATCAACTATCCTGAACTCTCCATCTACAGCCAGTACCCGCCAAGT 354
||||||||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||
Sbjct 328 CGTAAAGAGATCGAACTCAACTATCCTGGACTCTCCTTCTACAGCCAGTATCCGCCAAGT 387
Query 355 GGACTTTCCTTCAGCAGCAGCTCCTCGCAGTATGATCTCGGGGTTCGTTACAATCCTAAC 414
||| |||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 388 GGAGTTTCCTACAGCAGCAGTTCCTCCCAGTATGATCTCGGGGTTCGTTACAATCCTAAC 447
Query 415 ATTGCTAAAACTACTAAGCCCTATCCGTTCAACATCTTCGCATGTCGATTTGGATACAGA 474
||||||||||||| | |||||||||||||||||||||| |||||||| | |||||||||
Sbjct 448 ATTGCTAAAACTA--A-GCCCTATCCGTTCAACATCTTCACATGTCGACTCGGATACAGA 504
Query 475 GGGGGACTAAATTTCCCTCC-CATGTCTCACCTCTCGGTTCCAAAGACAGACGATTTGTC 533
|| || ||| |||||| | ||||||||||||||||||||||||| |||||||||||
Sbjct 505 GGC---CTTAATATCCCTCTGC-TGTCTCACCTCTCGGTTCCAAAGACGGACGATTTGTC 560
Query 534 CATAAACTTGATTTCAAATCTAGAGGGCAGCATTCACGACCAAGCCGTa-aaaaaaGATC 592
|| ||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct 561 CAAAAACTTGATTTCAAATCTAGAGGGCAGCATTCAGGACCAAGCCG-AGAAAAAAGATC 619
Query 593 AACCTGA-AGCTGATCCTTGCAAGGATTCTGATATAGACTTGTCCCTTAAGCTATAG 648
|||| || | ||||||||| |||||||||||| |||||||||||||| |||||||||
Sbjct 620 AACCCGACA-CTGATCCTTCCAAGGATTCTGACATAGACTTGTCCCTGAAGCTATAG 675
Score = 231 bits (125), Expect = 4e-60
Identities = 155/169 (92%), Gaps = 3/169 (2%)
Strand=Plus/Plus
Query 1 ATGGAACTAAACCTCTCTACACCCACATCATGTTCCTCCAGCAGCATCTCATCATCTTCG 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGAACTCAACCTCTCTACACCCACATCATGTTCCTCCAGCAGCATCTCATCATCCTCG 60
Query 61 CATGAGGCCATCCCTAGGACCAAGGGTAAAACGAAAGAGGAGGTCACGGCTGAGCCGTCG 120
||||||| |||||| ||||||||||||||| ||||||| |||| ||||||||||| |||
Sbjct 61 CATGAGGTCATCCCCAGGACCAAGGGTAAATTGAAAGAGAAGGTTACGGCTGAGCCATCG 120
Query 121 AAGGAGAATCAGCAGCGGCTAGAGTTCCGCTTCCTGTTCAACGAGAGTA 169
||||||| || | ||||||||||||||| |||||||||||||||||||
Sbjct 121 AAGGAGACTC--C-GCGGCTAGAGTTCCGTTTCCTGTTCAACGAGAGTA 166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23750577291
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5