BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01880.1
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939472 jgi|Araly1|939472|scaffold_600016.1 780 0.0
Ahg324794 jgi|Araly1|324794|fgenesh1_pm.C_scaffold_6000014 268 6e-71
> Ahg939472 jgi|Araly1|939472|scaffold_600016.1
Length=518
Score = 780 bits (422), Expect = 0.0
Identities = 490/522 (94%), Gaps = 8/522 (2%)
Strand=Plus/Plus
Query 100 GACGCCGGAGACTCATCGGATGCATCGACTGCTACTGGAATCCCACGGCGGCGGGAACGA 159
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 GACACCGGAGACTCCTCGGATGCATCGACTGCTACTGGAATCCCACGGCGGCGGGAACGA 62
Query 160 GACGAGCGGAAGCGGCGGGGGAGATGGGTACAC-GAGGGACATGAACTTCGACGCAAACA 218
||||||| | ||||||| |||||||||||| | ||| ||||||||||||||||||||||
Sbjct 63 GACGAGC-G--GCGGCGGCGGAGATGGGTAC-CTGAGAGACATGAACTTCGACGCAAACA 118
Query 219 TGGTGATCATACTTGCGGCTCTTCTCTGCGCGCTGATACTAGCGCTTGGGCTGAATTCGA 278
|||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||
Sbjct 119 TGGTGATCATACTTGCAGCTCTTCTGTGCGCGTTGATACTAGCGCTTGGGCTGAATTCGA 178
Query 279 TTCTCCGGTGCGCGATGCGATGCGGTTTCGGGTTATCATCCTCTGCGGCGGCGGGGACGG 338
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 179 TTCTCCGATGCGCGATGCGATGCGGTTTCGGGTTATCATCCTCTGCGGCGGCAGGGACGG 238
Query 339 TGGCCGACAG-AGCTGGATTAAAGAAGAGAGAACTGAAGAAGTTTCCAGTAGCTGAGTAC 397
|||||||||| || |||||| ||||||||||| |||||||||||||| ||||||| ||||
Sbjct 239 TGGCCGACAGAAG-TGGATTGAAGAAGAGAGAGCTGAAGAAGTTTCCTGTAGCTGCGTAC 297
Query 398 GGGTCGGGGGAAGTGAAGATAGCGGCGACGGAGTGCGCAATCTGTCTGGGGGAATTCGCG 457
|||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||
Sbjct 298 GGGTCGGGGGAAGTGAAGATAGCGGCGACGGAATGCGCAATCTGTTTGGGAGAATTCGCG 357
Query 458 GACGGCGAGAGAGTGCGAGTACTGCCGCCGTGTAATCACAGTTTCCACATGTCATGCATC 517
||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 358 GACGGCGAGAGAGTGAGAGTTCTGCCGCCGTGTAATCACAGCTTCCACATGTCATGCATC 417
Query 518 GACACGTGGCTTGTCTCTCACTCTTCATGTCCCAATTGTCGGCATTCACTCATCGAGGTC 577
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 418 GACACGTGGCTTGTCTCTCACTCTTCATGTCCCAATTGTCGGTATTCACTCATCGAGGTC 477
Query 578 CACGTGGCGGGGTCTGAGTGATTTAATTATCGTCGCGAGGGT 619
||||||| ||| || |||||||||||||||||||| | ||||
Sbjct 478 CACGTGGTGGGATCAGAGTGATTTAATTATCGTCGTG-GGGT 518
> Ahg324794 jgi|Araly1|324794|fgenesh1_pm.C_scaffold_6000014
Length=378
Score = 268 bits (145), Expect = 6e-71
Identities = 275/332 (83%), Gaps = 31/332 (9%)
Strand=Plus/Plus
Query 989 TGGTGTGGAAGCTTAAAGTATGTGTGAGAGCCAAAGGTTTCAGTTTGAAGCTCAATATAC 1048
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 2 TGGTGTGGAAGCTTGAAGTAAGTGTGAGAGCCAAAGGTTTCAGTTTGAAGCTCCATCTAC 61
Query 1049 GGAACAAGCTCTCGCTTCATCGATGGTCAATCCTCTTAAGATTCCGAAAGCATCA---TC 1105
||||| | |||||| ||| |||| |||||||||||||||||||||||||||||| ||
Sbjct 62 GGAACCGGATCTCGCATCAACGATTGTCAATCCTCTTAAGATTCCGAAAGCATCAGCATC 121
Query 1106 ATCATCTCAAATCCAAAC-CGTCCGATTG-GGTCAGATTCCGACGGAGTCTTTTTGCTCT 1163
|||||||||||||||||| | || ||||| || ||||| || |||||||||| |||||||
Sbjct 122 ATCATCTCAAATCCAAACAC-TCAGATTGCGG-CAGATGCCTACGGAGTCTTCTTGCTCT 179
Query 1164 CTTCCGTGGACGAAAACAGAGGGAAGTGGATACGAAGAAGAAACTCATCAAATTGGTTAG 1223
||||||| ||||||||| | | ||| | | ||| | |||||| || ||||| |
Sbjct 180 CTTCCGTAGACGAAAAC-G-G--AAG---A-A-GAA-A-----CTCATCGAACTGGTTTG 224
Query 1224 GAATCGAGCGGTGGTAGTGGCAAAGAAAGCAAAAGGCGTTGGTGTTGTGGTTACTCTCAT 1283
|||||||||||||| |||||||||||| |||||| |||||||||||||| |||||
Sbjct 225 GAATCGAGCGGTGG------CAAAGAAAGCAAGAGGCGTGGGTGTTGTGGTTACCCTCAT 278
Query 1284 CATCGT---CGTCATCAATTTTCTAGTCCCAT 1312
| |||| | ||||||||| |||| | ||||
Sbjct 279 CCTCGTAATCATCATCAATTATCTACTGCCAT 310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50703479610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5