BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G01881.1

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg324794 jgi|Araly1|324794|fgenesh1_pm.C_scaffold_6000014           278    3e-74


> Ahg324794 jgi|Araly1|324794|fgenesh1_pm.C_scaffold_6000014
Length=378

 Score =  278 bits (150),  Expect = 3e-74
 Identities = 327/403 (81%), Gaps = 49/403 (12%)
 Strand=Plus/Plus

Query  50   TGGTGTGGAAGCTTAAAGTATGTGTGAGAGCCAAAGGTTTCAGTTTGAAGCTCAATATAC  109
            |||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |||
Sbjct  2    TGGTGTGGAAGCTTGAAGTAAGTGTGAGAGCCAAAGGTTTCAGTTTGAAGCTCCATCTAC  61

Query  110  GGAACAAGCTCTCGCTTCATCGATGGTCAATCCTCTTAAGATTCCGAAAGCATCA---TC  166
            |||||  | |||||| ||| |||| ||||||||||||||||||||||||||||||   ||
Sbjct  62   GGAACCGGATCTCGCATCAACGATTGTCAATCCTCTTAAGATTCCGAAAGCATCAGCATC  121

Query  167  ATCATCTCAAATCCAAAC-CGTCCGATTG-GGTCAGATTCCGACGGAGTCTTTTTGCTCT  224
            |||||||||||||||||| | || ||||| || ||||| || |||||||||| |||||||
Sbjct  122  ATCATCTCAAATCCAAACAC-TCAGATTGCGG-CAGATGCCTACGGAGTCTTCTTGCTCT  179

Query  225  CTTCCGTGGACGAAAACAGAGGGAAGTGGATACGAAGAAGAAACTCATCAAATTGGTTAG  284
            ||||||| ||||||||| | |  |||   | | ||| |     |||||| || ||||| |
Sbjct  180  CTTCCGTAGACGAAAAC-G-G--AAG---A-A-GAA-A-----CTCATCGAACTGGTTTG  224

Query  285  GAATCGAGCGGTGGTAGTGGCAAAGAAAGCAAAAGGCGTTGGTGTTGTGGTTACTCTCAT  344
            ||||||||||||||      |||||||||||| |||||| |||||||||||||| |||||
Sbjct  225  GAATCGAGCGGTGG------CAAAGAAAGCAAGAGGCGTGGGTGTTGTGGTTACCCTCAT  278

Query  345  CATCGT---CGTCATCAATTTTCTA--G---TC-C---CATGGATCAACAAGCTGAG-CA  391
            | ||||   | ||||||||| ||||  |   || |   |||||| ||||| || ||  ||
Sbjct  279  CCTCGTAATCATCATCAATTATCTACTGCCATCACATTCATGGAGCAACA-GC-GAATCA  336

Query  392  G-C-GAATTAGATTGTTATGAATTGTTTGGTA-T-T-AAATAA  429
              | || ||||||||||||||||||||||||| | | ||||||
Sbjct  337  TTCCGA-TTAGATTGTTATGAATTGTTTGGTAGTATTAAATAA  378



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15453013545


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5