BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01890.1
Length=3499
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486880 jgi|Araly1|486880|fgenesh2_kg.6__14__AT5G01890.1 4669 0.0
Ahg929328 jgi|Araly1|929328|scaffold_301785.1 555 1e-156
Ahg947918 jgi|Araly1|947918|scaffold_704147.1 303 4e-81
> Ahg486880 jgi|Araly1|486880|fgenesh2_kg.6__14__AT5G01890.1
Length=3423
Score = 4669 bits (2528), Expect = 0.0
Identities = 2925/3115 (94%), Gaps = 33/3115 (1%)
Strand=Plus/Plus
Query 381 AACCTTACTTGAGCTCTGCATCATCATCCATGGCCATGGCCGACTAGCCTTCTTTCTTCG 440
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 327 AACCTTACTTGAGCTCTG---CATCATCCATGGCCATGGCCGAGTAGCCTTCTTTCTTC- 382
Query 441 CTT-TTTACCTCCTTAATATCTTTAAAAGCGAGAGGAAA---TGTTCAACGGCGCCGTTT 496
|| ||| ||| ||| | || | | ||||| ||||||||| ||||||||
Sbjct 383 TTTGTTTGCCTTCTTCCTCTC-GT--CCTCTTCCGGAAATGTTGTTCAACGACGCCGTTT 439
Query 497 CACTACTCTTCCTCTTCCTTGCC--GTCGTTTCAGCGAGGGCAGATCCGACATTCAACGA 554
|||| ||||||||||| ||| || | ||||||||||| |||||| ||||||||||||||
Sbjct 440 CACTCCTCTTCCTCTT-CTT-CCTTGCCGTTTCAGCGACGGCAGACCCGACATTCAACGA 497
Query 555 CGACGTTTTGGGTCTCATCGTTTTCAAGGCCGGACTCGACGACCCTCTCTCTAAGCTCTC 614
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 498 CGACGTTTTGGGTCTCATCGTTTTCAAGGCTGGACTCGACGACCCTCTCTCTAAGCTCTC 557
Query 615 TTCTTGGAACTCGGAAGACTACGATCCCTGCAACTGGGTCGGTTGCACATGCGACCCTGC 674
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 TTCTTGGAACTCCGAAGACTACGATCCCTGCAACTGGGTCGGTTGCACATGCGACCCTGC 617
Query 675 CACCAATCGGGTCTCGGAGCTCCGCCTTGACGCCTTCTCTCTCTCCGGTCACATCGGCCG 734
| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 618 CTCCAATCGGGTCTCGGAGCTCCGACTTGACTCCTTCTCTCTCTCCGGTCACATCGGCCG 677
Query 735 TGGCCTTCTCCGTCTCCAGTTCCTCCACACCTTGGTCCTCTCCAACAACAACCTCACCGG 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 TGGCCTTCTCCGTCTCCAGTTCCTCCACACCTTGGTCCTCTCCAACAACAACCTCACCGG 737
Query 795 AACCCTAAACCCCGAGTTCCCTCACCTCGGCAGCCTCCAAGTCGTCGATTTCAGTGGCAA 854
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 738 AACCCTAAACCCCGAGTTCCCTCACCTCGGCAGCCTCCAAGTCGTCGATTTCAGCGGCAA 797
Query 855 TAATCTCTCGGGTCGGATCCCAGACGGGTTCTTCGAGCAATGCGGGTCCTTGAGGTCCGT 914
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 TAGCCTCTCGGGTCGGATCCCAGACGGGTTCTTCGAGCAATGCGGGTCCTTGAGGTCCGT 857
Query 915 TTCCTTGGCTAACAACAAACTCACAGGTTCTATTCCTGTCTCCCTCAGCTACTGTTCTAC 974
|||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 858 CTCCTTGGCCAACAACAAACTCACAGGTCCTCTTCCTGTCTCCCTCAGCTACTGTTCTAC 917
Query 975 TCTCACCCATCTTAACCTCTCAAGCAATCAACTCTCTGGGAGGTTGCCCCGAGATATCTG 1034
||||| |||||||||||||||||||||||||| || ||||| || || |||||||||||
Sbjct 918 TCTCATTCATCTTAACCTCTCAAGCAATCAACTTTCCGGGAGATTACCACGAGATATCTG 977
Query 1035 GTTCCTCAAGAGCTTAAAGTCCCTTGATTTCTCTCACAATTTCCTCCAAGGAGATATCCC 1094
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 978 GTTCCTCAAGAGCTTAAAGTCCCTTGATTTATCTGTCAATTTCCTCCAAGGAGATATCCC 1037
Query 1095 CGATGGCCTCGGCGGTCTCTACGATCTCCGTCA-TATCAACTTATCCAGGAACTGGTTTT 1153
|||||||||||||||||||||||||||||||| | | ||||||||||| ||||||||||
Sbjct 1038 CGATGGCCTCGGCGGTCTCTACGATCTCCGTCTCTTT-AACTTATCCAGAAACTGGTTTT 1096
Query 1154 CCGGTGACGTTCCTTCCGACATCGGACGATGCTC-TTCCCTTAAATCGCTTGACTTGAGT 1212
|||||||||||||||||||||||||| |||| || |||||| ||||||||||||||||||
Sbjct 1097 CCGGTGACGTTCCTTCCGACATCGGAAGATG-TCCTTCCCTGAAATCGCTTGACTTGAGT 1155
Query 1213 GAGAACTACTTCTCCGGGAATCTTCCGGATTCGATGAAAAGCCTGGGCTCTTGCAGCTCC 1272
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||
Sbjct 1156 GAGAACTACTTCTCCGGGAATCTTCCGGCTTCCATGAAAAGCCTGGGCTCTTGCCGCTCC 1215
Query 1273 ATCCGTCTGCGAGGAAACTCTCTGATCGGAGAAATCCCTGATTGGATCGGCGACATTGCC 1332
||||| ||||||| ||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1216 ATCCGACTGCGAGCAAACTCTCTCATCGGAGAAATCCCTGATTGGATCGGTGACATTGCC 1275
Query 1333 ACTCTCGAGATTCTTGATCTCTCCGCCAACAACTTCACCGGCACTGTCCCATTCTCCCTC 1392
|||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1276 ACTCTCGAGACTCTTGATCTCTCCGCCAACAACTTCTCCGGCACTGTCCCATCCTCCCTC 1335
Query 1393 GGAAATCTCGAGTTTTTGAAGGATCTCAATCTATCCGCAAACATGCTCGCTGGAGAGCTC 1452
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1336 GGAAATCTCGAGTTTTTGAAGGAACTCAATCTATCCGCAAACATGCTCGCTGGGGAGCTC 1395
Query 1453 CCACAGACTC-TCTCCAACTGCTCCAACCTAATCTCCATTGATGTCAGCAAGAATTCATT 1511
|| ||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1396 CCGCAGAC-CATCTCCAACTGCTCCAACCTAATCTCCATTGATGTCAGTAAGAATTCATT 1454
Query 1512 CACCGGAGATGTGCTTAAGTGGATGTTCACCGGAAACTCTGAAAGTTCCTCGCTTTCCAG 1571
||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1455 CACAGGAGATGTGCTTCAGTGGATGTTCACCGGAAACTCTGAAAGTCCCTCGCTTTCCAG 1514
Query 1572 ATTTAGCCTCCACAAAAGATCAGGGAACGACACCATTATGCCCATCGTTGGATTCCTCCA 1631
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||
Sbjct 1515 ATTTAGCCTCCACAAAAGATCAGGGAACGACACCATTCTGCCCATCGTCGGATTCCTTCA 1574
Query 1632 AGGTCTCCGGGTCCTCGATCTGTCTTCAAACGGCTTCACCGGTGAATTACCGTCTAACAT 1691
| ||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||
Sbjct 1575 AAGTCTCCGGGTCCTCGATCTGTCTTCGAACGGGTTTACCGGTGAGTTACCGTCTAACAT 1634
Query 1692 TTGGATTCTCACAAGTTTGTTGCAGCTCAATATGTCCACCAACTCTCTCTTCGGTTCCAT 1751
|||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1635 TTGGATCCTCACAAGTTTGTTGCAGCTGAATATGTCCACCAACTCTCTGATCGGTTCCAT 1694
Query 1752 ACCCACCGGCATTGGAGGATTGAAAGTCGCTGAGATTCTTGATCTTAGTAGTAATCTTCT 1811
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1695 ACCCACCGGCATTGGAGGATTGAAAGTCGCTGAGATTCTTGATCTGAGTTGTAATCTTCT 1754
Query 1812 CAACGGAACCCTTCCTTCTGAGATCGGAGGAGCCGTCTCCCTGAAACAACTTCATCTCCA 1871
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1755 CAACGGAACCGTTCCTTCTGAGATCGGAGGAGCCGTCTCCCTAAAACAACTTCATCTCCA 1814
Query 1872 CAGAAACCGCCTCTCCGGCCAGATTCCGGCA-AAGATCTCTAACTGTTCGGCTTTAAACA 1930
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1815 GAGAAACCGCCTCTCCGGCCAGATTCCGGCACAA-ATCTCTAACTGTTCGGCTTTAAACG 1873
Query 1931 CAATAAATCTATCGGAGAATGAACTATCCGGTGCGATTCCGGGGAGCATTGGCAGTCTGA 1990
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1874 CAATAAATCTGTCGGAGAATGAACTATCCGGTGCGATTCCGGGGAGCATTGGCAGTTTGA 1933
Query 1991 GCAACCTTGAGTACATTGATCTGTCGAGAAACAATCTCTCGGGAAGTCTTCCCAAAGAAA 2050
||||||||||||||||||| |||||||||||||||||||||||||| || || |||||||
Sbjct 1934 GCAACCTTGAGTACATTGACCTGTCGAGAAACAATCTCTCGGGAAGCCTACCAAAAGAAA 1993
Query 2051 TAGAGAAACTTTCGCATCTCTTGACCTTTAACATCTCCCACAACAACATCACAGGGGAGC 2110
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1994 TAGAGAAACTTTCGCATCTCTTGACCTTCAACATCTCCCACAACAGCATCACAGGGGAGC 2053
Query 2111 TGCCAGCTGGAGGTTTCTTCAACACCATCCCTCTCTCTGCTGTCACCGGAAACCCATCCC 2170
|||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 2054 TGCCAGCTGGAGGTTTTTTCAACACCATCCCTCTCTCTGCCGTCGCCGGAAACCCATCCC 2113
Query 2171 TTTGTGGCTCCGTCGTTAACCGCTCATGTCTCTCTGTCCACCCCAAACCAATCGTCCTCA 2230
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2114 TCTGTGGCTCCGTTGTGAACCGCTCATGTCTCTCTGTCCACCCCAAACCAATCGTCCTCA 2173
Query 2231 ACCCCAACTCCTCCAATCCAACAAATGGTCCTGCTCTCACAGGGCAGATCAGGAAGAGCG 2290
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 2174 ACCCCAACTCCTCCAATCCAACCAATGGTCCTGCTCTCACCGGGCAGATCAGGAAGAGCG 2233
Query 2291 TTCTGAGCATATCTGCGCTCATTGCCATTGGCGCAGCTGCCGTCATTGCCATCGGGGTGG 2350
||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||
Sbjct 2234 TTCTGAGCATATCTGCGCTCATTGCGATTGGCGCAGCCGCCTTCATTGCCATCGGGGTGG 2293
Query 2351 TGGCTGTAACTCTGCTCAACGTGCACGCCCGATCTAGTGTTTCACGTCACGATGCAGCTG 2410
|||| |||||||| |||||| ||||||||||||||||| |||| |||||| |||||||||
Sbjct 2294 TGGCCGTAACTCTTCTCAACCTGCACGCCCGATCTAGTCTTTCCCGTCACAATGCAGCTG 2353
Query 2411 CTGCTCTCGCTCTGTCGGTTGGAGAGACGTTCAGCTGTTCGCCAAGTAAAGATCAAGAGT 2470
||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 2354 CTGCTCTAGCTCTGTCGGTTGGAGAAACGTTCAGCTGTTCCCCAAGTAAAGATCAAGAAT 2413
Query 2471 TTGGAAAGCTGGTCATGTTCTCAGGGGAAGTGGACGTGTTTGACACCACTGGCGCTGATG 2530
| ||||||||||| |||||||| || |||| |||||||||||||||||| ||||||||||
Sbjct 2414 TCGGAAAGCTGGTGATGTTCTCTGGCGAAGCGGACGTGTTTGACACCACAGGCGCTGATG 2473
Query 2531 CGTTGCTCAACAAGGACAGCGAGCTGGGACGAGGCGGGTTCGGTGTGGTGTACAAAACGA 2590
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2474 CGTTGCTCAACAAGGACTGCGAGCTGGGACGAGGCGGGTTCGGAGTGGTGTACAAAACGA 2533
Query 2591 GTCTTCAGGATGGGCGTCCTGTGGCAGTTAAGAAACTGACAGTGTCGGGTCTAATAAAGT 2650
|| ||||||||||||||||| || || ||||||||||| |||||||||||||||||||
Sbjct 2534 ACCTCCAGGATGGGCGTCCTGTTGCTGTCAAGAAACTGACTGTGTCGGGTCTAATAAAGT 2593
Query 2651 CGCAGGAGGAGTTCGAGAGAGAGATGAGAAAACTCGGGAAGCTGAGGCACAAGAATGTGG 2710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2594 CGCAGGAGGAGTTCGAGAGAGAGATGAGAAAACTCGGGAAGCTGAGGCACAAGAATGTGG 2653
Query 2711 TGGAGATAAAAGGGTACTACTGGACGCAATCGCTGCAGCTCTTGATCCACGAGTTTGTTT 2770
||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 2654 TGGAGATTAAAGGGTACTATTGGACGCAATCGCTGCAGCTCCTGATCCACGAGTTTGTTT 2713
Query 2771 CAGGCGGAAGCTTGTACAGACATCTCCACGGAGATGAGAGCGTTTGCCTAACTTGGCGTC 2830
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 2714 CAGGCGGAAGCTTGTACAGACATCTCCACGGAGATGAGAGCCTTTGCCTAACGTGGCGTC 2773
Query 2831 AACGTTTCAGTATCATTCTAGGGATAGCAAGAGGTCTGGCTTTTCTGCATAGCAGTAACA 2890
|||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 2774 AACGTTTCAGCATCATTCTAGGGATAGCAAGAGGTCTTGCTTATCTGCATAGCAGTAACA 2833
Query 2891 TCACTCACTACAA-CATGAAAGCAACGAATGTGCTCATTGACGCCGCAGGGGAGGCTAAA 2949
||||||||||||| | |||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 2834 TCACTCACTACAATC-TGAAAGCAACGAATGTGCTCATAGACGCCACAGGGGAGGCTAAA 2892
Query 2950 GTCTCTGACTTTGGGCTGGCCAGACTGTTGGCTTCGGCGCTGGACAGGTGCGTCTTGAGT 3009
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 2893 GTCTCTGACTTTGGGCTGGCCAGATTGTTGGCTTCGGCGCTGGACAGGTGTGTCTTGAGT 2952
Query 3010 GGCAAGGTACAGAGCGCGTTGGGGTACACAGCCCCGGAGTTTGCATGCCGGACAGTCAAG 3069
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2953 GGAAAGGTACAGAGCGCGTTGGGGTACACAGCCCCGGAATTTGCATGCCGGACAGTCAAG 3012
Query 3070 ATAACCGACAGGTGCGATGTTTACGGGTTTGGGATCCTGGTGCTGGAGGTGGTGACAGGG 3129
|||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 3013 ATAACCGACAAGTGCGATGTTTACGGGTTTGGGATCCTGGTGCTTGAGATGGTGACAGGG 3072
Query 3130 AAGAGACCCGTGGAGTACGCTGAGGACGACGTCGTGGT-CTTGTGTGAGACGGTGAGAGA 3188
||||| || ||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 3073 AAGAGGCCTGTGGAGTACGCTGAGGACGACGTGGTGGTGCT-GTGTGAGACGGTGAGAGA 3131
Query 3189 AGGGTTAGAAGAAGGGAGGGTGGAGGAGTGCGTTGACCCTCGGTTGAGAGGGAATTTTCC 3248
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 3132 AGGGTTAGAAGAAGGGAGGGTGGAGGAGTGCGTCGACCCTCGGTTGAGAGGGAATTTTCC 3191
Query 3249 AGCGGAGGAGGCAATACCGGTGATTAAACTAGGGTTGGTGTGTGGGTCCCAAGTGCCGTC 3308
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 3192 GGCGGAGGAGGCAATACCGGTGATTAAACTAGGGCTGGTATGTGGGTCCCAAGTGCCGTC 3251
Query 3309 GAATAGGCCGGAGATGGAGGAAGTGGTGAAGATATTAGAGCTCATACAATGTCCCTCTCA 3368
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 3252 AAATAGGCCGGAGATGGAGGAAGTAGTGAAGATATTAGAGCTCATACAGTGTCCCTCTCA 3311
Query 3369 TGACTTAGAGTGATT-AGTCAACTACAGATGAATCAATCCTCCTTGTTTGTATTTCTTCA 3427
||||||||||||||| | || ||||| ||||||||||||||||||| |||||||||||||
Sbjct 3312 TGACTTAGAGTGATTCA-TCCACTACGGATGAATCAATCCTCCTTGCTTGTATTTCTTCA 3370
Query 3428 TTCCTTGTTCAATTTTCATAT-T-ATCATAATATAGTGTTCGTCTTTTCTATAAA 3480
|||||| | |||||||||||| | ||||||||||||||||||||||||||| |||
Sbjct 3371 TTCCTT-T-CAATTTTCATATATTATCATAATATAGTGTTCGTCTTTTCTAAAAA 3423
Score = 285 bits (154), Expect = 1e-75
Identities = 288/346 (83%), Gaps = 36/346 (10%)
Strand=Plus/Plus
Query 16 TAGTAATAAAAAGCGGGGAGAGGAGAAGATTGTCTCCTAGAGCGACTTGAATCCTTGAGC 75
||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct 1 TAGTAATAAAAAGCGGGGAGAAGAGAAGATTGTCTCCT--A--GACTTGAATCCTTGAGC 56
Query 76 TTTCAAACTCATCTCCCGGAGCTTCCCTTTTCTCTTTActctctctctctctctctctct 135
|| ||| ||| ||||| | ||||||||||||||||||||||| ||||||||| | |
Sbjct 57 -CTC---CTCCTCT-CCGGAACCTCCCTTTTCTCTTTACTCTCTCTATCTCTCTCT-T-T 109
Query 136 ctctcACTTT--TCT-CT--Gttt-tttttCTTGGTGTCTGTCTTAATTCCACCATTAAT 189
| || |||| || | |||| | ||| | || ||||||||||||||||||||||||
Sbjct 110 -T-TC-CTTTGGCCTAGTAAGTTTATCTTT-TGGGGGTCTGTCTTAATTCCACCATTAAT 165
Query 190 GCTCTCTACCTTCC-ct--tttactcttcccctgcttttgtgttttctctttctcttttc 246
|||||||||||||| | |||||||| || ||||||||| ||||||||||||||||||
Sbjct 166 GCTCTCTACCTTCCTCCCGTTTACTCT-CC--TGCTTTTGTATTTTCTCTTTCTCTTTTC 222
Query 247 -taaaccctttcaaactcttcttcctcttctttctttttctccaataaca------gttt 299
|||||||||||||||||| | || ||||||||||||||||| ||||||| ||||
Sbjct 223 CTAAACCCTTTCAAACTCTGCCTCTTCTTCTTTCTTTTTCTCAAATAACAACAACAGTTT 282
Query 300 cttGTGCTCATGTTAAAACTGCAGC--TCTTTTCCGGTAAAAAGAA 343
||| |||||||||||| ||||||| | |||||||||| ||||||
Sbjct 283 CTTATGCTCATGTTAATTCTGCAGCAGTTTTTTCCGGTACAAAGAA 328
> Ahg929328 jgi|Araly1|929328|scaffold_301785.1
Length=451
Score = 555 bits (300), Expect = 1e-156
Identities = 329/343 (96%), Gaps = 2/343 (1%)
Strand=Plus/Plus
Query 628 GAAGACTACGATCCCTGCAACTGGGTCGGTTGCACATGCGACCCTGCCACCAATC-GGGT 686
|||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct 78 GAAGACTACGATCCCTGCAACTGGGTCGGTTGCACATGCGACCCTGCCTCCAA-CTGGGT 136
Query 687 CTCGGAGCTCCGCCTTGACGCCTTCTCTCTCTCCGGTCACATCGGCCGTGGCCTTCTCCG 746
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 CTCGAAGCTCCGACTTGACGCCTTCTCTCTCTCCGGTCACATCGGCCGTGGCCTTCTCCG 196
Query 747 TCTCCAGTTCCTCCACACCTTGGTCCTCTCCAACAACAACCTCACCGGAACCCTAAACCC 806
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 197 TCTCCAGTTCCTCCACACCTTGGTCCTCTCCAACAACAACCTCACCAGAACCCTAAACCC 256
Query 807 CGAGTTCCCTCACCTCGGCAGCCTCCAAGTCGTCGATTTCAGTGGCAATAATCTCTCGGG 866
|||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||
Sbjct 257 CGAGTTCCCTCACCTCGGCAGCCTCCAAGTCGGCGATTTCAGCGGCAATAGTCTCTCGGG 316
Query 867 TCGGATCCCAGACGGGTTCTTCGAGCAATGCGGGTCCTTGAGGTCCGTTTCCTTGGCTAA 926
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 317 TCGGATCCCAGACGGGTTCTTCGAGCAATGCGGGTCCTTGAGGTCCGTCTCCTTGGCCAA 376
Query 927 CAACAAACTCACAGGTTCTATTCCTGTCTCCCTCAGCTACTGT 969
|||||||||||| ||| || |||||||||||||||||||||||
Sbjct 377 CAACAAACTCACGGGTCCTCTTCCTGTCTCCCTCAGCTACTGT 419
> Ahg947918 jgi|Araly1|947918|scaffold_704147.1
Length=445
Score = 303 bits (164), Expect = 4e-81
Identities = 182/191 (95%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 779 ACAACAACCTCACCGGAACCCTAAACCCCGAGTTCCCTCACCTCGGCAGCCTCCAAGTCG 838
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ACAACAACCTCACCAGAACCCTAAACCCCGAGTTCCCTCACCTCGGCAGCCTCCAAGTCA 386
Query 839 TCGATTTCAGTGGCAATAATCTCTCGGGTCGGATCCCAGACGGGTTCTTCGAGCAATGCG 898
|||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 385 TCGATTTCAGCGGCAATAGTCTCTCGGGTCAGATCCCAGACGGGTTCTTCGAGCAATGCG 326
Query 899 GGTCCTTGAGGTCCGTTTCCTTGGCTAACAACAAACTCACAGGTTCTATTCCTGTCTCCC 958
|||||||||||||||| |||||||| |||||||||||||||||| || ||||||||||||
Sbjct 325 GGTCCTTGAGGTCCGTCTCCTTGGCCAACAACAAACTCACAGGTCCTCTTCCTGTCTCCC 266
Query 959 TCAGCTACTGT 969
|||||||||||
Sbjct 265 TCAGCTACTGT 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132135893456
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5