BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01900.1
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892017 jgi|Araly1|892017|Al_scaffold_0006_13 1160 0.0
> Ahg892017 jgi|Araly1|892017|Al_scaffold_0006_13
Length=789
Score = 1160 bits (628), Expect = 0.0
Identities = 741/795 (93%), Gaps = 9/795 (1%)
Strand=Plus/Plus
Query 57 ATGAACTCTTGCCAACAAAAGGCTATGGAGAAGTTGCTTCACGGGCATGGGTGCGCCAAC 116
||||||||||||||||||||||| |||||||| | |||| ||||| ||||||| |||
Sbjct 1 ATGAACTCTTGCCAACAAAAGGCAATGGAGAAACTACTTCGCGGGCGCAGGTGCGCTAAC 60
Query 117 CAGCTGCTCATCATGGACCAGACCGAGTCAGACTCGTCCATGGAAAGGGAGGATTTGGCC 176
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 61 CAGCTGCTCATTATGGACCACACCGAGTCAGACTCGTCCATGGAAAGGGAAGATTTGGCC 120
Query 177 AAGTCCGTCCTCCATTGTTTCTCAGATGCGCTCTCCATCTTGATCGATACTAATGACCAC 236
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 121 AAGTCCGTCCTCCATTGTTTCTCAGATTCTCTCTCCATCTTGATCGATACTAATGACCAC 180
Query 237 CAAGACGATCAATCCAATAACTCATCTCCTCAGGACTCTTCTCCTGTGCTTGAGAGCTCC 296
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||
Sbjct 181 CAAGACGATCAATCCAATAACTCATCCCCTCAGGACTCTTCTCCTGTTCTTGAGAGCGCC 240
Query 297 AGGAAACCACTTCACAAGAGGGGAAGAAAGACATCTATGGCAGAGAGCTCAGACTACCAT 356
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 AGGAAACCACTTCACAAGAGGGGAAGAAAGACATCAATGGCAGAGAGCTCAGACTACCAT 300
Query 357 AGACACGAATCTTCAACCCCGATCTACCACGACGGCTTCCTCTGGAGGAAATACGGACAA 416
|||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGACGCGAATCCTCAACCCCTATCTACCACGACGGCTTCCTCTGGAGGAAATACGGACAA 360
Query 417 AAGCAGATCAAAGAATCTGAGTACCAAAGGAGTTACTACAAGTGTGCCTACACCAAGGAC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 AAGCAGATCAAAGAATCTGAGTACCAAAGGAGTTACTACAAGTGTGCCTACACAAAGGAC 420
Query 477 CAGAACTGTGAAGCAAAGAAGCAGGTTCAAAAGATCCAACACAATCCTCCATTGTACTCA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAGAACTGTGAAGCAAAGAAGCAGGTTCAAAAGATCCAACACAATCCTCCATTGTACTCA 480
Query 537 ACCACTTACTTCGGCCAGCACATATGCCAGCTTCATCAAGCTTATGCAACTTTCCCCATT 596
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 481 ACCACTTACTTCGGCCAACACACATGCCAGCTTCATCAAGCTTATGCAACTTTCCCCATT 540
Query 597 GACACATCTGACT-TCGAAGAGCACGAGGGATCCCACATGATCCGATTCGGTCACCCCAA 655
||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 541 GACACCTCTGACACT-GAAGAGCACGACGGATCCCACATGATCCGATTCGGTCACCC-AG 598
Query 656 C-ATCAGCTTCTCCTCCTCCACCTCTAACCTCCGCCAACATCAGAATCATCAGGATCGCA 714
| | |||||||| | |||||||| ||| |||| | |||||||||||||| ||||| |
Sbjct 599 CCACCAGCTTCTTCGCCTCCACCCCTAGCCTCAGTCAACATCAGAATCA---GGATCACG 655
Query 715 TCAAAGATGAATACATGAAACCGGTGATAGCAGAAGATTGG-TCTCCATCCCAGTGGATG 773
|||||||||| |||||||||||||||||||||||||| ||| | ||||||| ||||||||
Sbjct 656 TCAAAGATGATTACATGAAACCGGTGATAGCAGAAGAGTGGGT-TCCATCCGAGTGGATG 714
Query 774 TCGTCCGAGGTTGCCCTCGCCGTGGAGGCTTTCGAGTTTAATCCTTTCTGGACATCTCAC 833
|||||||||||||||| ||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 715 TCGTCCGAGGTTGCCCACGCGGTGGAGGCTTTCGAGTTTAACCCTTTATGGACATCTCAT 774
Query 834 GACTTATCATCATGA 848
|||||||||||||||
Sbjct 775 GACTTATCATCATGA 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36254894067
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5