BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01910.1
Length=842
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939469 jgi|Araly1|939469|scaffold_600013.1 549 1e-155
> Ahg939469 jgi|Araly1|939469|scaffold_600013.1
Length=610
Score = 549 bits (297), Expect = 1e-155
Identities = 532/633 (84%), Gaps = 66/633 (10%)
Strand=Plus/Plus
Query 135 ACAAAAAGAAATGAAATGTTCAGGTCGAAAAGCACTGCAGCCG-AGAAACATCTACCAGA 193
||||||| ||||||||||||||||||||||||| ||||||||| || ||||||| |||||
Sbjct 11 ACAAAAAAAAATGAAATGTTCAGGTCGAAAAGCTCTGCAGCCGAAG-AACATCTTCCAGA 69
Query 194 CCCCAAAGGAGGATGCTTTCTTCGTGAAGCCCAAAGCTGCAGAGAAGCTCAAGGAGAATC 253
|||||||||||||||||||| | |||||| |||||||||| | |||| || | | |
Sbjct 70 CCCCAAAGGAGGATGCTTTCGTGGTGAAGGCCAAAGCTGC--TG-AGCTGAA-G-G-A-- 121
Query 254 TGAATCTTGAGACATCAATCGATGCTTCTCTTGCGGAGGAGCTTAGTGCCTTCaagaaga 313
||||| | | |||||||||||||||||||||||||||||| |||| |||||||
Sbjct 122 -GAATC-T--G------ATCGATGCTTCTCTTGCGGAGGAGCTTAGTTCCTTTAAGAAGA 171
Query 314 aactcgagaggctgagagaggatcgagagagcactgagaagctgctaaaggagagagaTG 373
|||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 172 AACTCGAGAGGCAGAGAGAGGATAGAGAGAGGACTGAGAAGCTGCTAAAGGAGAGAGATG 231
Query 374 AAGCCATGGATCTGCACATGAGCCATCTTCTCCAGAGAGGAGAGACACAGAAAAGCCTTG 433
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 GAGCCATGGATGTGCAGATGAGCCATCTTCTCCAGAGAGGAGAGACACAGAAAAGCCTTG 291
Query 434 AAATCCAGGTCGATCGCCTCTTTCGATTGAAGGAGCTCCACGCCTATTCCTCTAAGATTT 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 AAATCCAGGTCGATCGCCTCTTTCGATTGAAGGAGCTCCACGCCTATTCCTCTAAGATTT 351
Query 494 CTCCAATCCGATCTCTGAGAGCCAAGGAGCA-GCAGGAGAAGATGAGACGCTTCACCTTC 552
| ||||||||||||||||||||||||||||| | || || |||| ||||||||| ||||
Sbjct 352 CCCCAATCCGATCTCTGAGAGCCAAGGAGCATG-AG-AG--GATGCGACGCTTCAGCTTC 407
Query 553 G---C--AG--GT-GAAGAACAA--CCA-GAT-GA-AGAAAGC-TC-CGTCGAG-ATCGC 596
| | || | |||||| || || | | || || ||| || || ||| || ||
Sbjct 408 GTGACCCAGAAGAAGAAGAAGAAAGCCCCG-TCGAGAGGAAGAATCTCGA-GAGCATTGC 465
Query 597 TAATGGGCCCATTGAA---GAAGAAAGCTCGACCAA-AAGTAATG-TGTTGGAGAGAGAT 651
||||||||||| ||| |||||||||||||| | ||| ||| ||| | ||| |
Sbjct 466 AAATGGGCCCATGGAACAAGAAGAAAGCTCGACGACCAAG-AATAATGTCG-AGA----T 519
Query 652 ATGATCATCGCAAATACCCAACCCATCATATCTTGATATTGTAATGTCTCGTTACAATTG 711
||| || || |||||| ||| | |||||||||||||||||||||||||||||
Sbjct 520 C--ATCCTC--AA-TACCCAT---ATC-T--CTTGATATTGTAATGTCTCGTTACAATTG 568
Query 712 GGCTTTT-CTCTTGATCCATAGGCCCATTCTTT 743
||||||| |||||||||||||||||||||||||
Sbjct 569 GGCTTTTTCTCTTGATCCATAGGCCCATTCTTT 601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31146423189
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5